Array 1 3999628-3995461 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN810019.1 Shewanella algae strain MARS 14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3999627 28 100.0 32 ............................ ATCTTGTGATGATTGGCTCAACTCGATAGCGT 3999567 28 100.0 32 ............................ TTCCAGGTCATAAGTTACACCCGCGGCTGTTA 3999507 28 100.0 32 ............................ TTTATTTGGCCACTCTTGATGGCATCGAACAC 3999447 28 100.0 32 ............................ TCTGGATCCTTCTCGCGCCAATGCAGGCCGTA 3999387 28 100.0 32 ............................ ATAAAGCAGTGGCACAGGGTGCCCGGCTGACG 3999327 28 100.0 32 ............................ AATCCAACATATCAGCCTCCGAATATTATGGC 3999267 28 100.0 32 ............................ GTCGAGTCCTGTTCCTGCAGGACAGCCAGCCA 3999207 28 100.0 31 ............................ GCATGTCTACCAAGGTCGGGTTGGGTGTGGG 3999148 28 100.0 32 ............................ TGCGGCAAGTCAATTCTGTGGCTGCGCTCGTA 3999088 28 100.0 32 ............................ TGTCTGTTGCGCCCGAAGCATTTTTGCGGATT 3999028 28 100.0 32 ............................ AACACTGTCAGACGGGCCCAGGTTAAGCAGTG 3998968 28 100.0 32 ............................ TGTCTGAGCCCTCACGGTCCGACTTGTCTCGG 3998908 28 100.0 32 ............................ CCCGCTCGCTTCTTGGCCTCTTCGATCTTCTC 3998848 28 100.0 32 ............................ TCGCACCATATGCCGAACGACTTGGCCTCAGT 3998788 28 100.0 32 ............................ AATGACGGCTTTTGGCCGGACTTGTCGGTGAG 3998728 28 100.0 32 ............................ GATAGGCACCGCAGGCCCTAACGAATTTAACG 3998668 28 100.0 32 ............................ TCAAACCGTTTGAGAAACCACTGCTCAGCGGC 3998608 28 100.0 32 ............................ TCAAGCGTAACGAGTGCCCGCCGTATGTTGTT 3998548 28 100.0 32 ............................ TACCTGCTCGATGGCGAAGTGTCGGCGCTCAC 3998488 28 100.0 32 ............................ AAACCAAATCCACATAGGCCGCTTACGGCCAA 3998428 28 96.4 32 ..................T......... GGTGATCTGTATCTCTACGCTGATAACCTGGA 3998368 28 100.0 32 ............................ GCGACCGCTACGGCTTGAACACGGTTCGCGAA 3998308 28 100.0 32 ............................ GCCCATTTAAATAAGGGGAGAAATTAAGTTGC 3998248 28 100.0 32 ............................ ATACCCCTTTCAATGGGAGGTTGCGCAAAACT 3998188 28 100.0 32 ............................ GAACTTGCGGAAAATATCGACTTGCCCACCGC 3998128 28 100.0 32 ............................ TAGATGATCGCAATCAAGCGCATAGCTACTCG 3998068 28 100.0 32 ............................ TTCTGTGCTTCCAATAATAGGGTAACGTCACC 3998008 28 100.0 32 ............................ GAATTGAATGTAAGTAATGGTGTTGCAACAGC 3997948 28 100.0 32 ............................ TTCTCGATAACACAATCACTTGGCAGCGGCGC 3997888 28 100.0 32 ............................ AGTTTGGTGCCCAACATACTCAACTGCGCTTA 3997828 28 100.0 32 ............................ AATAACCCGGCGTCTCTGCGTATGATGTTCCT 3997768 28 100.0 32 ............................ TTCTAGGAATTCCAAATCCATGAAATAGGCAT 3997708 28 100.0 32 ............................ ATAAAAGGAACATCAAAATGGAATATCCGAAT 3997648 28 100.0 32 ............................ AGTTTGGTGCCCAACATACTCAACTGCGCTTA 3997588 28 100.0 32 ............................ AATAACCCGGCGTCTCTGCGTATGATGTTCCT 3997528 28 100.0 32 ............................ TCAGGGGTGGTCAATGACCTCTTCGGGGATGT 3997468 28 100.0 32 ............................ ACCATCTGATGAATCCTGTACTATTCAGCAAA 3997408 28 100.0 32 ............................ TATTGCATCATCATGACAGGCATGACCGTGAT 3997348 28 100.0 32 ............................ TGATAGTCCGAGCCATAACGCATCGCAATACG 3997288 28 100.0 32 ............................ TCCTGACCATTGGTGACAATAATCTCAGCCTT 3997228 28 100.0 32 ............................ TGAGGCACCTGGAACTGATTAGGGAGATTAAA 3997168 28 100.0 32 ............................ TGATAACCTCTTGCGGGGTCAACGGGGCTGGC 3997108 28 100.0 32 ............................ TGATAACCTCTTGCGGGGTCAACGGGGCTGGC 3997048 28 100.0 32 ............................ AACTGCAGGAGTTTATGGGGTATTCAATGGTG 3996988 28 100.0 32 ............................ AACTGCAGGAGTTTATGGGGTATTCAATGGTG 3996928 28 100.0 32 ............................ GCCGCTAAGGTGATGGGCTACTCGGTAAAAGA 3996868 28 100.0 32 ............................ GTTGAACTCATAAAATATCTTCTCGCAGCACA 3996808 28 100.0 32 ............................ AGCAGATGACATACCTATGCCAGCAGATAGCA 3996748 28 100.0 32 ............................ GCTGGGGAAGAATGCGAATACAAATTGTGGAG 3996688 28 100.0 32 ............................ TTATTACCCTCGCCTGGATGGCTTTTGCCATT 3996628 28 100.0 32 ............................ AGTCAGGCGTTGTCACATCAGCTCAGCTTGAC 3996568 28 100.0 32 ............................ ACTTCCGGCGCCTAAAGGTGTCAGGCGACGAG 3996508 28 100.0 32 ............................ ATCACAGATTGAGTATGTCTCGAATGCTTTCA 3996448 28 100.0 32 ............................ TGCAGAGAATGAGCGCTCAACCGCCTCATAAG 3996388 28 100.0 32 ............................ TTCACGAAGAACTGCCGGAGGAGCTTAAATGC 3996328 28 100.0 32 ............................ TTTTGGACGACCGGCACCCTTTCTTGCTCCAC 3996268 28 100.0 32 ............................ AGACTGGCAAGCGAAGAAGGTTTGAGTGAAAA 3996208 28 100.0 32 ............................ TCGGGGGTGCAGCATGACAGAGCAACAGTTTA 3996148 28 100.0 32 ............................ AAGTTGAATGAACGACTGCATGGCTTTTGAGT 3996088 28 100.0 32 ............................ AGTTTACGGGATACCGATTTGCTTAAGTGGGC 3996028 28 100.0 32 ............................ AGTTAGCACCGCCATCATCTGAATAAACCATT 3995968 28 100.0 32 ............................ TAGACTCAGGTGAGCTTCATCGACAACGAACA 3995908 28 100.0 32 ............................ AGTGAAATCCTGTTGTTCGTTTACCGCAAAAA 3995848 28 100.0 32 ............................ TATGTGAACCGTGACGAGCTCAGCTAACGTTT 3995788 28 100.0 32 ............................ GTTTAGTTAAACCAACGCCCAAGATCCGATTT 3995728 28 100.0 32 ............................ AGCTGAGTGATTTCAGTGTTGGACACCGGCAT 3995668 28 96.4 32 ..................T......... TTTATCCAAGCGTTCAGAGCGGATGGCTGAAT 3995608 28 100.0 32 ............................ GGCATGGAAATGAACGGCGGCAAAACGGTCGC 3995548 28 100.0 32 ............................ AGGATGACAAATTGATAGCAGGAGTTAATTAT 3995488 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 70 28 99.9 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTGAGCTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCTGCAAAGTCGGGCAAGCCGCTGGCCGAGTGCTTAACCGATCTTGAAAAAGGCAAACCGACTGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATCGAAAGATATCCGCAAAGTACACCTGTGGATGGGCAGTTCGATTGCTACGGGCTAAGTCGTAAAGTTAATGGTATTGCATCGCTTGGAACAGTACCGCACTTTTAAGCATCAAAGGGTGAGTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTATATACAATCAGTTACAACAGGTGGTATTCAACAGGGTAAAAATAGCTTTTTTATCCTAACCACCTGTTGTGACTTTCTTTTATTGATTTATTCTATT # Right flank : GTTCTTCTGGTGATGACCTTTCCCCCGAATTTATCACTCGGCCCCAGCAAAATCCGAACGTCTTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGTGATCTAAATAGCGGCCCGGCTCAAGGCAGCATGTCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCTGCTCTGGGCGGGCGCCATTCCAGGGTTTGGCCCGGCAGGCTCTGCCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCGATGTGTTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCTTTCAAGGGGGAGCGGATAAGCGGGGCCGAGTAGCTGACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGACGGCCAGAAGGCAAACACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //