Array 1 179072-174956 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDZH01000005.1 Pluralibacter gergoviae strain JB83E35 contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 179071 29 100.0 32 ............................. ATGATATTTGGCGATGGGATTCCATGCTTTAT 179010 29 100.0 32 ............................. CGCCAGTTTGAGATGATCCTCTCGGCCTTTCT 178949 29 100.0 32 ............................. CTGTTAATGCCGTCACAAAAAACGTCGGTGTC 178888 29 100.0 32 ............................. TTCCAAATATGCTTGTTCCTGATGATGTAACG 178827 29 100.0 32 ............................. CGCCCAATATACGGCGGGGATATGTCTGGCGT 178766 29 100.0 32 ............................. CCTGGATAGCTTTAGCCTGCCGGTGGTGGCTA 178705 29 96.6 32 ............................T TTCTCAGTAACGATGAGCGCCAGTTTCGGTGA 178644 29 100.0 32 ............................. CTACCGCGCTATATGCCCCGCCCTTTAGTTCG 178583 29 100.0 32 ............................. TGTGGAAGTCGATAATTTTTGTGATGGCATTA 178522 29 100.0 32 ............................. GCATATGATGGTTTGTTGTCCGGGTCCTGCCG 178461 29 100.0 32 ............................. TTCACCAGCAATCAGGTCATCAATCTTTGACG 178400 29 100.0 32 ............................. TTCACCAGCAATCAGGTCATCAATCTTTGACG 178339 29 100.0 32 ............................. CAATACGGCCGGCGACTGAATCAGCCTTACCG 178278 29 100.0 32 ............................. TCGATGCCGGCATAAAAATGCTGGAGTCCGCC 178217 29 100.0 32 ............................. GCTGTTTGCCGCGAGGCACGTCGCCGTCAATG 178156 29 100.0 32 ............................. TGCTCCGTGGGACAGCTGGCCCTCGTAAAAAT 178095 29 100.0 32 ............................. ATTTCCACCTATTTATATAACCCTAATGCTAC 178034 29 100.0 32 ............................. ACCTGGCCAAAATGGAGACGGCGGCGAAGAAG 177973 29 100.0 32 ............................. CAGTTATCAAATAGCTCTTAGCATTATTGTTT 177912 29 100.0 32 ............................. TGCCGGATCTGTTTCAACTGTCGGAACCTGGA 177851 29 100.0 32 ............................. TTCAGGATCCGTAAAGTCGGGACACCTACCTG 177790 29 100.0 32 ............................. TGCAGCAGCTGAGTTTGCGGCCCCTGCGTGTC 177729 29 100.0 32 ............................. CGCCAGCGACTCTACCAGGAATTCGGCTACCC 177668 29 100.0 32 ............................. TACGGTATAAATTTCAATGGTCGGGACTACGG 177607 29 100.0 32 ............................. CATTGAAGAACCCCTTAATCAGTTGGCAAAAC 177546 29 100.0 32 ............................. TATACATATGAGTCACAGGCATTATCCATGAT 177485 29 100.0 32 ............................. TGATGTGATTATACAGGTTGACGGATGGTATA 177424 29 100.0 32 ............................. GAATAGCGTCTGGTCTCGCGGCGCGGACTCCA 177363 29 100.0 32 ............................. CGATGATCGAAAAGTTGGCGGTGAACAAACGG 177302 29 100.0 32 ............................. TCGGTCCCGCAGCTGGCACATAGGTGAGGTAT 177241 29 100.0 32 ............................. GCAGATAGCTGCACATATAACGAGAGAGCGAC 177180 29 100.0 32 ............................. GGAGTTAGCTTTAGCAAGCGCCTAATGAAGTG 177119 29 100.0 32 ............................. TACGAAGCCGAGTATGGAAAGACTCCGCCGTC 177058 29 100.0 32 ............................. GCAGATAGCTGCACATATAACGAGAGAGCGAC 176997 29 100.0 32 ............................. GCGGAGTTTTTTACGTGATGGCATCCGTGGGC 176936 29 100.0 32 ............................. GGCGCGACGGCGATATTTTCCGCACGTCGGAG 176875 29 100.0 32 ............................. CTCGTTAAAGGTATGATAGCCATCTGACACTT 176814 29 100.0 32 ............................. CTAAGATGAGATTCCTTTAGGTGTAGCTGGAT 176753 29 100.0 32 ............................. TGAGCTGGCAGACCATGAAGGCCGGATATCTC 176692 29 100.0 32 ............................. GCTGAGCGTGAGGTTTTCCTGGCATGAGTAGG 176631 29 100.0 32 ............................. CCACCTGTAAAATCCACAGTTCTCTAATCTGC 176570 29 100.0 32 ............................. TGATCAGGGCATTCGAACGGTTGGCATTTGAT 176509 29 100.0 32 ............................. CAGAGTTTGTTTTATGTGCGCCCACGGGAGAG 176448 29 100.0 32 ............................. CCCGGTCGGACTCAGTCCGGCGAACTTCACCG 176387 29 100.0 32 ............................. ATGCCGGTGATTGGCGCGGCCACGGAGCGCCG 176326 29 100.0 32 ............................. TCCCACTTTAGCGACCAGGATTTAGGGTCTAT 176265 29 100.0 32 ............................. GCAACAGAAGAAAAGCTGGCAGCGCTCAACCT 176204 29 100.0 32 ............................. TGATTCTGTAGCCGGTCGAATTGCATCTTCGA 176143 29 100.0 32 ............................. GCCCTGCACATTTGCGCGTAATAAGGCTGTTA 176082 29 100.0 32 ............................. GCCGGAGCCAGGTGACGGGGGTCGTCCCGCCC 176021 29 100.0 32 ............................. CCCTTGCGGAACCAGTAGGCTACCGGGGCGCC 175960 29 100.0 32 ............................. GTCAGAGCGCAGCAGGCCCGCCACCGCGCCAG 175899 29 100.0 32 ............................. ACTGGAGGTGATGCCCAAGGATTCTGCCGTCA 175838 29 100.0 32 ............................. GCGAAAAACCATCTGGCCCCACTGAATAACGG 175777 29 100.0 32 ............................. GTACGCAGCGGGCAGCGCTATCTCATCGCGGT 175716 29 100.0 32 ............................. CCACCTGCTAGCCCTGGTTGTAAAAATCTGCC 175655 29 100.0 32 ............................. AACGCGCGCCGTTTCGTTGAACTGATGGCCCA 175594 29 100.0 32 ............................. GCGAGCTGACGCTGGATAAATTCGTTGATGGC 175533 29 100.0 32 ............................. GTGTCAGATGCTGCGCAATTTGCCGATTGCAA 175472 29 100.0 32 ............................. AGTTGTCACCTCGTTACCGTGCCCGCAAGCGA 175411 29 100.0 32 ............................. ATTAGGCAAAGCAGCGCGCTGTACACGATCGC 175350 29 100.0 32 ............................. CGCAATCATCAGTAAGTCGTTTGATGGCCTCC 175289 29 100.0 32 ............................. ATTTCTCCCCGGCCAGCCAGGACGCGGTTGCA 175228 29 100.0 32 ............................. TTTCTCGGCATGTCGCCGAAAATGGGCAGCGT 175167 29 96.6 32 ....................A........ AAAAAACGTCATCAACGAATGACTATGCGCTC 175106 29 100.0 32 ............................. AATGGCAGACGCAACATGCCGATATAATTGGC 175045 29 96.6 32 ........T.................... CTGCCACGGTAGAAGCGGTGCCAGCTATACCT 174984 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 68 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGGCGGCCGGAGAGATCTCTCCACCCGAGCCGCCCGCCGACGCGCAGCCGATTGCGATCCCCCCTCCGGTCTCGTTCGGCGATGCTGGTCACAGGAGTTCGTAAGCATGGCGATGCTGATGGTTGTTACCGAAAACGTGCCGCCCCGCCTGCGCGGCAGACTGGCTATCTGGCTGCTTGAGGTACGGGCGGGCGTCTACGTCGGCGATACCTCCGCGCGAATACGCGAGATGATCTGGCAGCAAATCACCGCCTTCGCTGAAGAGGGCAATGTCGTTATGGCGTGGGCCACCAACTCGGAGTCGGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGAAGAGTGCCGGTAGATTTAGATGGACTGAGGCTGGTTTCGTTTCTTCCTGATAATAATCAGTAGGTTATTAGCTCTTTAATAATGGGGAATTGTTTGTTTTATGTTGGTAGAATTTTGTGCATTGAAAAAGCTGATTTAAAACAGTTGGTTGTATTTAGA # Right flank : ACAAATGGACGTGGGAAGAGCAAGAAGATTACGTGTTCCCCCGTACTTACGGAAACAAAACCAACCTAACCATGCCGCAATAGCTGACAATGCTCTCTCCTCCGCAGCATCAGCAATAAACAATTCCCTGTTCCCTTATTTCCCCACCTTCTTATTCCCATTGGCGCCTTTCGCCGTTCCTGCCAGCTCCCGCACCAGCGGCAGCATCACGTTGACCACTTCGCGTCCGCGCAGGTCGATGCGCCCCGGCAGCGCTTTGTCGAGGTACTGCTGATTATCAAGGCGCGGGTCGTGCCAGCTGGTGCCCTCGGGGAAGGTGCGGGACTTGGTCCGCTGCTGGTAGCCGTCTTTCTTGCCCAGCGACCAGTTGGTGGCCTCGACGGACAGCACCGGGATGCCGGCGCTGTCGAAAACGTCGGCGTCGCTGCAGCAGGCGGTGCCTTTGGGATAGGCGGCGTTAAGGCCGGGGTTGGAGGCGGCCGGTACGCCCCAGCGGTGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 191664-189804 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDZH01000005.1 Pluralibacter gergoviae strain JB83E35 contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 191663 29 100.0 32 ............................. ACCTTATCTCATCCGCCGTGTTCAATGATGGC 191602 29 100.0 32 ............................. GCGGATTTCGGTATTTATGTCAACTATAGCAA 191541 29 100.0 32 ............................. TAACTGCCGCAACGAGCACAGTATCTTCTGGG 191480 29 100.0 32 ............................. GTCTGACTGGAACTTCCATGAGCCATCTGAAG 191419 29 100.0 32 ............................. TGCTGATACACAGCATATCAGCACCATTGCCA 191358 29 100.0 32 ............................. AAATGCTTCACACACTGGCCCAGGCCATGCTG 191297 29 100.0 32 ............................. TTTGCATCACTAAAGGAGTCTGGCGACGACAC 191236 29 100.0 32 ............................. GCATGAACACCGGGGCGAGCGATATCATTATT 191175 29 100.0 32 ............................. CTCTTCGTCTGGAACTCGCCGTTTTCGTCACG 191114 29 100.0 33 ............................. TGATGGAAGAAACCCCGGTGGAATGGTGCCGAC 191052 29 100.0 32 ............................. GCGACGACTGGAACGTCATGTCATTCAGCTTC 190991 29 100.0 32 ............................. AACCTTGGCAACCAACTGGTCGCGATCGCTGA 190930 29 100.0 32 ............................. AACCTTGGCAACCAACTGGTCGCGATCGCTGA 190869 29 100.0 32 ............................. GGGTCCGACACCTACGAGGAATTGACCAACGG 190808 29 100.0 32 ............................. CAGCCTGTTAGCACGGACGTCGTCCAGCGCCA 190747 29 100.0 32 ............................. CGCCTGGACGACGTTTTCAGCCAGCTTCCCGC 190686 29 100.0 32 ............................. CGTGGCCGTATTACTGGCCGGTCCAGATACAG 190625 29 100.0 32 ............................. TCTCATTTAGGCGGGGATGCCGCGTATCATCG 190564 29 100.0 32 ............................. CAGTCACCTCGCGGCTTCATCCTGCGGTCCTG 190503 29 100.0 32 ............................. AATCCTCAGAGCATTCGACAGTCGTGTCATAC 190442 29 100.0 32 ............................. GTTGTGGGCAGCCACAGACGCCTGCAGAGAAA 190381 29 100.0 32 ............................. AGGTTGCTGACCTCGGCGTTGATGCATCTGCT 190320 29 100.0 32 ............................. TAAGCCGCTGCGACGTGTGCGTTGAGGGCACC 190259 29 100.0 32 ............................. GCAGTGGACCTGAATATAACGGGTATTACCAA 190198 29 100.0 32 ............................. ATCCGTACCAATCAGCTAGCTACCGTCAGGGA 190137 29 100.0 32 ............................. CTCTCTGCGGGATTTGGCATCAGCACCGAATT 190076 29 100.0 32 ............................. CCAGTTGGCAGCGGCTCTTCCTCGCCACATGA 190015 29 100.0 32 ............................. CAGACAACGCTTCGCCGGAAGAAACGCAGGAA 189954 29 100.0 32 ............................. GTGCTGGCCAGACTGACGGTAATGAGCTTGCA 189893 29 100.0 32 ............................. CGCGTAGCCCACTATCGCAACGGCCGCCCTGG 189832 29 93.1 0 .............T....A.......... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGTACCTGCAAAAGCACGGCCTTAAGTACCACCCGCTGTGGGACGAAGGCTACCTCTCCGTCGGCGATACCCACACTACCCGCAAGTGGGAGCCGGGCATGGCGGAAGAGGAGACGCGCTTCTTCGGACTCAAGCGCGAGTGCGGGTTGCACGAAGGGTAAGGGCAGAGGCTGGCTCAACCTGGCGCAAACTATCTCAATATTTTTAATCATTGAGATAGTTTGTTACGGCATCCGATCCTGGCGGTGCTATTACCGAACGTCAAATCTTCAGAACAAAGTTGTGCTAATACCTTACGCCGGGGTCTTACCTTCCTGAGCGCTCCCTCAGCGTTATCCCGGGATATTTATGGGCTACTTTCCGTAGAATGCGATCCAGGTAAAAGACTTCCTATAACGCTCTAATAAAATCAATTAGTTACTGCTCTTTACTAATCTGGAAAAGTTGGTAGATATTTTCTTTCAAAAAAAACTATTATTATTCATGCGGTTGCTTTTAGA # Right flank : ATAGCATTGGCTGTTCCATGTTTGTGCGCTATGATTATGCACATAAACTATGCGCAGGAGGTTATGATGAGAACGAATGTTGCCGAAAAAAAACGGAGTACAAACCTGTACTTAAATGCTGGACTGCTTGAAGAGGCCAAACAACTCGATCTGAACATTTCCGCGATAACTAACCATGCGCTGGAAATGGCCGTCATAGCACGTAGGCGCGAACGCTGGATCGAGGAAAACCGCGCGGGTATTGAGGCGTTAAACGGCTTTGTAGAAGAAACGGGTATTTTTTCCGATGATGAAAATTTCGGGGTAATTTAGTGAAACAGTTTGCAGTTTATAAAAATAAATTCCGAAATAAACAGGCATACCCGTATTTCATTGATGTGCAGACAGATATGCTAGCGCATCTCAATACTCGCCTGGTTATGCCGCTAACTAAGAAAGATAATTCTAATTCGCAGGTAAAAGCATTAACACCGGTGATTAAAATCGACCAGATTGAGTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //