Array 1 5322-6752 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUXW01000016.1 Salmonella enterica strain AR-17 NODE_16_length_81951_cov_21.2326, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5322 29 100.0 32 ............................. CCTGCGTATATCTGGACGGAAACGAACTGGTT 5383 29 100.0 32 ............................. ACACCCCGACTGTAGATGAAATTCCCGTCGTT 5444 29 100.0 32 ............................. CTTACCGCAGAACCGTACATGCGGCTCATTTC 5505 29 100.0 32 ............................. GTAATTCCTCGCCGTAAACGTAACGGAAATAC 5566 29 100.0 32 ............................. GCCGCGAAATCGCAGCGCCGCATGACGACTCT 5627 29 100.0 32 ............................. TAATATTCTTATCCAATATTTTATTGCTTGAG 5688 29 100.0 32 ............................. TAGATAGTGAACTTTATGAAGAAGTAATGAAG 5749 29 100.0 32 ............................. GGGATGTCACAATGATAAGGCGTTTTCCGTTA 5810 29 100.0 32 ............................. GCGGATAATTCAACAGCGTTGGGCTATAGCAC 5871 29 100.0 32 ............................. GTTGAAATCTTGGCCGCAGCGGAGGAAATGGG 5932 29 100.0 32 ............................. CGCAATTACACTGACAATTCGTCAGCGCAAAC 5993 29 100.0 32 ............................. AAATTTGGCTTGATGCCGCAAACAAAGAACTT 6054 29 100.0 32 ............................. AACTGCTTAAATCAAAAGGACTTCACTAATGA 6115 29 100.0 32 ............................. CCCGTGTGCCCTTTACCCTTGCCGTAGTCCAA 6176 29 100.0 32 ............................. ACATTGATTGATACGTGTATCAATCGCTGGTC 6237 29 100.0 32 ............................. TCGCGGATTTTCTTAAACGCAGCAATAATATT 6298 29 100.0 32 ............................. AGTTCAGTCCAGTTAACGCTGAACGGCGAACC 6359 29 100.0 32 ............................. ATCGTTGTCGTTCGTGTTGCTGAGGGTGCGAA 6420 29 100.0 32 ............................. GGGCCCCCACGATTTAGCCTTTGACAATTATA 6481 29 100.0 32 ............................. GAAAGCTACGACTTACCAGACTGAAGCCATAA 6542 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 6603 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 6664 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 6725 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTAGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23009-24504 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUXW01000016.1 Salmonella enterica strain AR-17 NODE_16_length_81951_cov_21.2326, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 23009 29 100.0 32 ............................. TTACTTGATGTTGCCATAGAAGAATCTGACCC 23070 29 100.0 32 ............................. ACGGGTATTCCAGATTAATTCCGGTCGGTGTT 23131 29 100.0 32 ............................. TCATCCGTGTTGACAATAATACTGGTTATACC 23192 29 100.0 32 ............................. TACCCGCCTTTTATTTCGCTATATCAAAGGGG 23253 29 100.0 32 ............................. GCCGCGATTTGCTGCGCCTCCGGTACGGCAAC 23314 29 100.0 32 ............................. AAAATCACCAGATCCGGGCGCAAGGGCGCCGC 23375 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 23436 29 100.0 32 ............................. TTCTTTACAAAGAAGAGGGCTACCCGGTTGCG 23497 29 100.0 32 ............................. TTGTGACTTTGATAGTGATTGAAAGCACCTGT 23558 29 100.0 32 ............................. TGAGTTGCGCTTCATACGCTCTTTTTGCTCTG 23619 29 100.0 32 ............................. ATGCGTAGTCCAGCAGCTGCGCGGCGGCGTTT 23680 29 100.0 32 ............................. CCCATCCCCAGAATTTACCGATATGCTCCACA 23741 29 100.0 33 ............................. GGCCTAGGTGATCCGTTGGCGTGGAACGTTAGC 23803 29 100.0 32 ............................. CAACTGCGACACATACCTCTCACACCATCACT 23864 29 100.0 32 ............................. AAAAAAGGGAAAAAGGGGGGGCTGTTTCTCCT 23925 29 100.0 32 ............................. CCATCCGAAAAAGCCGCGTTTACGCCGATGTT 23986 29 100.0 32 ............................. GTTTATAAAAAACACTCGCAAACAAGATGATT 24047 29 100.0 32 ............................. CTCTCAAATGCCTGCCACATCACGCGCGACGC 24108 29 100.0 32 ............................. CTGGGAACCCACTTCATCGGAGCGGCTTCACC 24169 29 100.0 33 ............................. CCGTATTGAGGCGCTATTCCGTGCTGTGCCGCC 24231 29 100.0 32 ............................. GCTACTTACAGAGAACTACTGGCAAAAGAAAC 24292 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 24353 29 100.0 32 ............................. TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 24414 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 24475 29 100.0 0 ............................. | A [24502] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //