Array 1 42326-39429 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLZR01000024.1 Escherichia coli strain MOD1-EC6327 MOD1-EC6327_24_length_70300_cov_36.3233, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 42325 29 100.0 32 ............................. GAGAGAGTCCAGTATCAATCCCGCAATCCGCA 42264 29 100.0 32 ............................. CGTACAGTATAACCTCATCCGGGAGCGTCTCA 42203 29 100.0 32 ............................. CCACCCTCAGATCGCCCTTGTACATCATGTAC 42142 29 100.0 32 ............................. CGCACCGGCTGAGCCAGCAACAACAGAAACCG 42081 29 100.0 32 ............................. ATCCGTACCGGCTGCGCCGGGCTTCGGCGGCT 42020 29 100.0 32 ............................. GGCGTGAATGAGGAATTGAACTTTGCATTCAA 41959 29 100.0 32 ............................. AAAGAGTTGGGACTGATCAGTTGCCAGCAGCC 41898 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 41837 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 41776 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 41715 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 41654 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 41593 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 41532 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 41471 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 41410 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 41349 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 41288 29 100.0 32 ............................. GGTTATTTATAATCCATTGTTTCCATTACCAG 41227 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 41166 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 41105 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 41044 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 40983 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 40921 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 40860 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 40799 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 40738 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 40677 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 40616 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 40555 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 40494 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 40433 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 40372 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 40311 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 40250 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 40189 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 40128 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 40067 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 40006 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 39945 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 39884 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 39823 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 39762 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 39701 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 39640 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 39579 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 39518 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 39457 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69825-68027 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLZR01000024.1 Escherichia coli strain MOD1-EC6327 MOD1-EC6327_24_length_70300_cov_36.3233, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69824 29 100.0 32 ............................. CCAGCGACCGCGACATCTCTCTATATCTCCAG 69763 29 100.0 32 ............................. CTCCCGTTTTTGGGTACATTCGTTTTTGATAT 69702 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 69641 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 69580 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 69519 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 69458 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 69397 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 69336 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 69275 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 69214 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 69153 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 69092 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 69031 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 68970 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 68909 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 68848 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 68787 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 68726 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 68665 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 68604 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 68543 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 68482 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 68421 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 68360 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 68299 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 68238 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 68177 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 68116 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 68055 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGATTTTTACCAAAATCATTAGGGGATTCATCAGTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTATCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAG # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //