Array 1 2611973-2614198 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATWO01000001.1 Desulfotignum balticum DSM 7044 K365DRAFT_scaffold00001.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2611973 37 97.3 36 ......................A.............. TTCCCCAGGGATGAAAACGCCGCATACCTTAAAATC 2612046 37 100.0 35 ..................................... ATCGGCAAGCCCTGGGATCACAATTTTCATTGCCA 2612118 37 100.0 37 ..................................... CAAACTGACACTTCGACTTGATATTGAACCAAGATTG 2612192 37 97.3 35 ...............................A..... CACATTTTCAGACGATGAGCTGGAATTTACCGAAG 2612264 37 100.0 36 ..................................... GTAATTATTTTGCCATAGCTGTTAGAATACACATCA 2612337 37 100.0 37 ..................................... CCGCAGCTGATCACTGCCAGGGACGCATTGACGGACC 2612411 37 100.0 36 ..................................... GGCGGCCAGAGGCCAGGAAACTGGACGTTTGCCGGT 2612484 37 100.0 35 ..................................... CCTTTTCAGGGGTAGGGGCCTTGCGCCGGTCCGGC 2612556 37 100.0 35 ..................................... ATGCCAGCGCATTCATGACAGCCCCTAATCCTCGT 2612628 37 100.0 37 ..................................... GTTTCTGCTTCTGAGGTGTTTGGAGATTGACGTATGC 2612702 37 100.0 35 ..................................... CTTTTGTTTCCGCTGGTATCAACAGTGTATACCCA 2612774 37 100.0 36 ..................................... TGGATGTGTAAGCAGAGAAACGGCTGCACAGTACGG 2612847 37 100.0 35 ..................................... TTGTTAATGAAGCCAGATGTTTCTGTGTCAAAGAA 2612919 37 100.0 35 ..................................... CACCAGTTGCAAAACCTTCCCCACGAGTTGTATTA 2612991 37 100.0 37 ..................................... AGGATTATTTTCAAAGGGGATAATTGGAAATATATTT 2613065 37 97.3 36 ............T........................ ATCACCTAAACACTTAGCTTCTTCAGAGAATAACCA 2613138 37 100.0 36 ..................................... CCACTCCGGCGGATCTGGTGCCACCTGGGAAGAACC 2613211 37 100.0 37 ..................................... TTAAGGATATGAACAAGGCACTACAAACGATGGATAA 2613285 37 100.0 36 ..................................... GCCCCGGTTGTATAAAAACCGACACCAACCAATGAA 2613358 37 100.0 36 ..................................... CGGCCGAGCAGGGACAGACCTTTTTTGATACCCCAA 2613431 37 100.0 36 ..................................... ATATTCAGGGCTTGTCTTTGGAACATCTGGACCTTG 2613504 37 100.0 37 ..................................... GTCAAATTGTTTGCCGTGCCTGGGATGTAAAAAATAC 2613578 37 100.0 35 ..................................... CCCGGCGCAAATTCATGGATGCCCGACGACGTTTG 2613650 37 100.0 36 ..................................... CGATGAATGTCAACAGTTCATCCCCCCCAGGTATAA 2613723 37 100.0 36 ..................................... ATGACGATATTTTCCTTGAAGCCGGATTTGTACGTA 2613796 37 100.0 36 ..................................... GTGGAAGTAGGTTAGCAGTAACTTACGGGATGGAAA 2613869 37 100.0 37 ..................................... AGGTTAAGCAATGGAGCGCGCCGAAGTATCAGACACC 2613943 37 100.0 36 ..................................... CTACAGTAACTGAAGTGACGGCAACTAATCTTGGTA 2614016 37 100.0 36 ..................................... ACTTTCAACGGATTCGGGTATGGTCTTTTTCTCAGC 2614089 37 100.0 36 ..................................... CCTCCTGGAAGCCTGGCGGGTGTTTGGTATGTATCA 2614162 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 31 37 99.7 36 GCTTCAATGGGGCCGGAGCTGATATGCTCCGGAAAAC # Left flank : AGTATAGTGCCAAAATAGGGCACGGCATGGACACGCTCAAGGGCAAGGTGCTCGCCCTGGGGTCGGCGTTTGAAAAATTCAAGCGGTACGGCCTGGTGGTGTTTACTGTCGGGGCCGGGCTGCTCAGTCTGCTGACCGGCACTGTTTCGGCCACGGTGCCGCCGCAAAAAGCCCTGGAGGAACTGTCGTCTGTCGGGGGTTCGGGACCTTGCCGCTCTGGATGAGGCCGGGGCCGGGTGTTCCAACCGCTGGGCCGGCACCACCCGAGATCAGTTCATCAGTGCGGCGTATGACATCAAATCCGGGATATCGTCGCTATCCGATGAAGGGGCTGCCGAATTCACCAAGCTGGCGGCCTTGACCGGCAAGGCCACAAAATCCACCACCGCCGAGATGACCAGTTTGTTTGCCACCGGGTACGGAATCTAAAAGGGTATGTACGGGGATTTGTCCAACTTGGCCTTTGGAGAGGTGTTTTCCGCGGGTATTGCCGCCAGCGT # Right flank : CAGCCCGCTCGCAACCCTTTTAAAACAAAAGGATAATTGCGGTATTTGCGAGAGGTCGGACATGGCGATTCCCAACGGAACCTTTTTTGCAATTCCGGACATAAAATTCATCCTTTTTTATTGAATTGTCAAAGAACACAGGCGCTTCGAGTGCTCCCGGAGCCGATTGCATCAATGGACCGCTCGAAAGCTCCCGGCAAAAAAAATCATATAACCACAGCGCTGTGCTTTATGGGCTGGAAAGGTCTTCCATAGCTTGCCACTTTGAAAGAAACAGTTTCAGCCACACCGATATCGATAATGATCAGATTGTCTTCATCACAATGCATGATTTCCGTCAGGGTATCGGTCATTTTCAGCAGATCCTCCTTGTTCAGCCGGCATTGAAAAACCGACAGCTGCAGCCATGCCCCATATCCTTTCATGGTCTTGTAGATTTTCCGCCACCGCTTCTGGTCGGAAATATCATAACACACCAGATAAACATGTTCCATATCACT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGGGGCCGGAGCTGATATGCTCCGGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.70,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 2 3501436-3498968 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATWO01000001.1 Desulfotignum balticum DSM 7044 K365DRAFT_scaffold00001.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3501435 28 100.0 33 ............................ TTTTATCCGAGGGAGGCATAAATGGAAAACGCA 3501374 28 100.0 33 ............................ TCATGCAGTTACCCACGTTGCTCCTGAACTGCT 3501313 28 100.0 33 ............................ CTATTTGAACCTGATTTTTGTGGCCGCGTCGGA 3501252 28 100.0 33 ............................ TTAATACATTGCTGCCAATCACCGATCGGATAG 3501191 28 100.0 33 ............................ TCGATATGTGTTTTGATCCTTACTATTCAGTTA 3501130 28 100.0 33 ............................ CTCGTACTAAACCGCCTTTGCCTTTCGAGCATG 3501069 28 100.0 33 ............................ TTAATAGTTATGTGCTCCGGAGAACATTCCCCG 3501008 28 100.0 33 ............................ TCTATCATCAAGTCTTGTATTTAGTTCAGTGTT 3500947 28 100.0 33 ............................ TATTGCCATTTTGTTGTTTTTTGCACGATCCTT 3500886 28 100.0 33 ............................ CGCAGATGTTTGCTCCCTGACTAAATCCATTGC 3500825 28 100.0 33 ............................ TGTTTGGATGCTTCATACTGCCTCCTTTTTTGG 3500764 28 100.0 33 ............................ TACCATCTATGCAAGGGCTGGATGAAAATTTAG 3500703 28 100.0 33 ............................ TGTATATCGTCGAAGTCAAAACCACCCCGAAGG 3500642 28 100.0 33 ............................ TTAAAGAAGTTTTAAAAGACATACAGGAACAAA 3500581 28 100.0 33 ............................ CACCGCACCGGCGAGCATAACGAGATACACAAG 3500520 28 100.0 33 ............................ TCCCATGGGGTTGTCAGTGTTTGCCATTTGTCA 3500459 28 100.0 33 ............................ CACCCCACGTCCTGGCTCCAGATCCGCCTGCCT 3500398 28 100.0 33 ............................ TGGAGTACACGTGTTCAAATTGCGGGAGAACTT 3500337 28 100.0 33 ............................ TCGCTCCATCCAGTCCAAAATACCTTTCGGGTA 3500276 28 100.0 33 ............................ TTTATACGCTGCCCGTGCAACGTCAGAATATCT 3500215 28 100.0 33 ............................ TCTTCCCAGCCGCGTCTAATAGGAAAACTCCTA 3500154 28 100.0 33 ............................ TTGGTTTGAAGATGGCATGACAGACGATGAAAG 3500093 28 100.0 33 ............................ CATTGTACTTCTGTGCAATTTTTGTATGTGACA 3500032 28 100.0 33 ............................ CCTTTGCAGACGCACCTAACTGTTTCAGGTTGG 3499971 28 100.0 33 ............................ TCAGGTGAAGTTGGTATCCGCCCACTGAACGCG 3499910 28 100.0 33 ............................ TGCTTTGGGATTACTCAATCACCGGGTGGACAG 3499849 28 100.0 33 ............................ GGAAAGCCGCCCCTCGTACTCTTCTGCCAGCTT 3499788 28 100.0 33 ............................ CAAAGCCTTCCTGATGAAAAATCACATTGGGTT 3499727 28 100.0 33 ............................ TACCCCATTTCTTCAGTATCAGCCGGAAACAAG 3499666 28 100.0 33 ............................ TAACCATCTATCCTTGTCAGCATCGGGCCGATT 3499605 28 100.0 33 ............................ TGTGTATTCTTTTTCGGTGCTGGTCAAAGGGTC 3499544 28 100.0 33 ............................ CGCTGAAAAGTCGGGGGTCCAGTTCCTGACCGC 3499483 28 100.0 33 ............................ CATATAATAATCCCCTGCAGGGGGACTATATGG 3499422 28 100.0 33 ............................ CTAAAAGCGCAAATGATATAAAAGGTTGTATCA 3499361 28 100.0 33 ............................ CCCCTGAAGGAAACGTGACGATATCATCGATGG 3499300 28 100.0 33 ............................ TATGCTGGGCGCTGTTCGAGGTTGGGATTTTGA 3499239 28 100.0 33 ............................ TCTGACAGCCTCGACATCAACATCGACAACAAG 3499178 28 100.0 33 ............................ CTATCAGGGGATACCGGTGGTGATGGCGGTAAA 3499117 28 100.0 33 ............................ TCTCAGAAATTTGTTTTTTTTATTTGCTGGACA 3499056 28 100.0 33 ............................ TTGGACGAAAGCTTGTCTATACTCCGGCATTGA 3498995 28 92.9 0 ...........A..C............. | ========== ====== ====== ====== ============================ ================================= ================== 41 28 99.8 33 ATCTTCCCCACGCCTGTGGGGGTGTTCC # Left flank : TATATAAAGAATATTTGTGTATAGATCTGTCTTTCGCTTTGACCAGAGAAATGGCTGGTGTTTATAATAAACATTTGGTATCAAAGGCGTTTCGTGAGCGTGTCATCGGGATGGACCTTCTGGTAAAGGCAGCAAAGGATATCTCCGACTTGATGGGAGGGAAAAGTGCTTGTCGTGGTGGCCAATAAATTGCCCCCTGCCGTCCGGGGAAGGATGAAACTATGGTTTGTAGAACCCAGGGCAAATATTTTCGTTTCCGGTATTAAAGATTCAGTTGCTGCAACCGTGATCGAATATTTGTACAAACATTGTCCAGAAGAATCTGGTATAGTGATGTTTCAGTCTATTTCAAAGCCTCCGGGATATACCATACGTTCTATCGGTGCTACAGATAAACAAATGACAGAAATTTCAGGTTTGCAATTGGTTGTCGAAAAGTTAGTTGGAGCAGAGAAACAAGATATTGTGTTTTCTTGATTGTTCTTTGACAATATGTTGCT # Right flank : CTCAGCAAGAGACTTTAGCAGCATTGGCAGAAGGTCTTCCCCACGCCTCGAAATCATCAATAGGGCGCCTTCCATATTTTTACTTTCATGCTTTCTTTGATATGATATGGTTGGAAAATGGGAAGCGTTAGACCTCTGGGAGAATAGAAAAAAGAATTATTCTGCGATTGGATGAAAGATTTTATGCAATACTTGTTTGGCAACATTGATAATGATTTGGCCAGGGCGTTAATGACCCAGCTGCGGGATTTCTGGACCTACAATTCCACAGCCATAGAAGGCAACAGCCTGGCCCTGGGTGAAACCGCGTTTGTGTTGCAGGAAGGCCTGGCTGTCGGGGGAAAACCCTTGAAGGATCATCTGGCCGTGGTGGGACATGCAAAGGCGATTGATCTGATATATGACCTGGCGCAAAACAATACCCTTTTCACGGAAAAAGAACTGTTCAGGCTTTGCAGGATGGTTCAGGCAGAGCAGGTCTCTGATGTTCATGGACCGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTTCCCCACGCCTGTGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //