Array 1 79742-82001 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBEW01000031.1 Ligilactobacillus salivarius strain AH43324 AH43324_contig_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 79742 36 100.0 33 .................................... TTTAATCTCAGTTAATTTGTTTAATAATTTTCC 79811 36 100.0 38 .................................... TAATTGTTCAGCTGCTTGTTGTAACAAATCAGCTAAGC 79885 36 100.0 37 .................................... CAAAACTAGCACTTGTAACAAATCCACTTTGAATATC 79958 36 100.0 33 .................................... TTCAACAAGGCATCAAAAAGCTTGTTTAAAAAA 80027 36 100.0 43 .................................... TTAAAATATATGGATAAAGTGTTTCATTACGTCCATCTCCTGA 80106 36 100.0 40 .................................... TGATTTTGTTGGGATGAAAAATGGTAGTTTGCCACCTTCA 80182 36 100.0 42 .................................... TTAGCGACTTTATCATTTATGATCTTTTTAAATATTTCTTTT 80260 36 100.0 34 .................................... ATATTCTAAGAATAGATCATTCATTTTATCTTCA 80330 36 100.0 39 .................................... TCAGCAAGGCGAAGCCTCGCATTGTTTAGAGTATCCACC 80405 36 100.0 38 .................................... CATCACTTGTATTGATAAACATCTTGGCAGCTCGATTT 80479 36 100.0 37 .................................... TCACCATTGTTAACGCTCTTAAAATTTCTATTGAAGA 80552 36 100.0 40 .................................... CTTTCACCTTTGTTGGTTACCGTGATAATTAACAACTCTC 80628 36 100.0 39 .................................... GGCAACCTAGGCCCCACCCTTTAAGGTATTAAGTTTTCA 80703 36 100.0 37 .................................... AGCCCACAAGCTGCCCTCACGTGGTAACTATGATTAA 80776 36 100.0 38 .................................... ACATACTGCTGCTGATAAAACTATACTTTTTTTCATTT 80850 36 97.2 34 ..............................A..... TTCAACTTGAATTGAAGCATATTTTAATAATTTA 80920 36 100.0 35 .................................... TCACGATAGCCTAGTACCAGAGCTACTCCTTTCAT 80991 36 100.0 34 .................................... AGGTTTCAACTTCAAAGGTTGCAAAATCATCATC 81061 36 100.0 40 .................................... CAATAACCCGCTGTTGTTAATGTAATCATTTTTCATCACC 81137 36 100.0 39 .................................... TTTTTCTTTTATTGTGAAATATAGGTCATCATATTTTTC 81212 36 100.0 37 .................................... ATTGATACTATGGTTCACTTGTCAACAGTTTACCAGG 81285 36 100.0 35 .................................... ACTAAATAACCTTTATTACTCGTATATTTTTATTT 81356 36 100.0 40 .................................... CTGAGTTAATTTTTGAACTAATTTTTTCTAAAACATCTCT 81432 36 100.0 42 .................................... TATATACATTTGACGGATCCATTTCTTCAGTTGAATTATTTG 81510 36 100.0 40 .................................... TCTTCGATAGTTATAACATAACCGTAGCCTTTTTCATTGA 81586 36 100.0 37 .................................... CAATCCCCACCTCCGAGGATTAGTTGCATAGAATTTA 81659 36 100.0 41 .................................... CTAAACCTCGCTTGCTTTCTCAGCTAACGAAAAAGGTATAG 81736 36 100.0 40 .................................... AAAAATATTAGGCTTAAATGTTCCAGTTTATTTCTACCTT 81812 36 100.0 41 .................................... TTACCACCAGAAAAAGCAACTAAGATATTATCAAATTCATT 81889 36 97.2 40 .....................G.............. CCTGCTGTTGTTAGTTCGATCATTTTTCTTCATCCTTTCG 81965 35 88.9 0 ............................-....TCT | TT [81995] ========== ====== ====== ====== ==================================== =========================================== ================== 31 36 99.5 38 AGTAAGAACATATCTCCGAATATAGGAGACGAAAAC # Left flank : ACAGGATTGAAATTACCGACTTTCATTGAGGAAGGAAGATAAGTATGATGCTATTAGTATGTTTTGATTTACCAAGAGACACGAAAGAGAATAGAAAAGAAGCAACTAAATATCATAAGAAATTAGTAGAATTAGGTTTCACAATGAAGCAATTTAGTGTGTATGAAAGAGAAGTAAGACAAAATTCTACTAGAGATAGAGTAATTAAAGTGTTAAAAGATAGATTACCTAAATCAGGTGCAATTACTTTATATTTACTTCCTAACGAAGTAAATGATTCACAAATAACGATTTTAGGAAGTGAGTCTATAAAGAAAACTGTTAGGAAACCTCAATTTATTGTGTTATAATACACTTACACTGCTGTAAGAAACAGTAGTACAAATAAAACTTGTCTGAATTTTGACCAAATAATACTTATTAATTTAACCTATTGCCCGTTTAGGGTACCATTAAAAATGTCAATAATTGTTGATATATCAACTAATTGATCAAAGAGT # Right flank : TAATTAAAGTGATAAGAAGGAGAGTAAAAGTTAGAAAAAATAATATATAATATAGGTAATTAATTAGAAAGTGGTGTAATTATGACAACATTAATATCATGTATTGGTGATACAGATCCTATAAGAAATAGGCATGATGGAGCTTTATTGCATTTAGCAAGAGTATTTCGCCCTGAAAAAATATTATTAATATACTCTGAGCGTGCTTTACTAAAAGAGAATAATATCTTATTAGCGTTAAATTCTATAGAAGGATATAATCCTGTAATAAAAAAAGATGAGAGATTTATTTCCAATAGTGAAGTATTTATTTTCGATAAAATGTATGAAATATTAAATAATATAGTTTTAAAGTATTCTAGGGATGGTGAGGATTTAATTTTGAATTTATCTAGTGGAACTCCACAAATGAAGTCAGCTTTATTTACTATTAATAGATTGAATGATATTAATGTCAGAGCCTATCAAGTAATAACACCTAGTCATTCTTCAAATGAAGG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTAAGAACATATCTCCGAATATAGGAGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 64105-63878 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBEW01000069.1 Ligilactobacillus salivarius strain AH43324 AH43324_contig_69, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 64104 29 100.0 37 ............................. ATGTACGAGGGATAGGAGTAGCAGTCATAGGTTTTGT 64038 29 100.0 37 ............................. TTTAACTTTTCAGGATTTATCCTCTTCTCCGTCTTAC 63972 29 96.6 37 ........T.................... TTCTTACCATTAGCATAAGCAGCTAGGTTGGTCTTAC 63906 29 89.7 0 ................C....C.T..... | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 96.6 37 ACCTATGTCATTTAACTTAGGTTCAGAAC # Left flank : ATATATTAAAACAAGGAGTTATGTTAGTTAGGATAATTATTACTATCCTAAAGAGAAAAAGTTTTGAGTTTGTAGCTTAATGCTACAATTGGCACTAACAGAATCGAACTGTTATAAGACAACCATGTGTGCCAGCCTATAAGTAACTTTAAAAAAGGAGTAATATAACCATCTTAGGGTTTATCCAAGCCCTATTGGTGTTAGTGGGATCGAACCACTATAAAGCAACCATGCACACCAACCAAATATTTTAAGGAGTTTATATAATAAGGCATTTGATCCTACAATAAGAGGAAATAGTTTTAGGGTCTATGACAACCCTATTGGTAGCCAAGGAATCGAACCTTGATACAACCACTCTACCAACCTTAAGTGATTCTTTCAGTGCAAGTATAATGCCACTGTGAAGCTTGCCAGTGGCAATAAGCATAGCTAGAGTCGAACTAGCTTTTATTCCAAAATGCTTATAATGTATTAACCATTCTAGCTTTACGTTTTGT # Right flank : CCATATTTAATTTGACACAAGTTTCTTGGGAACTCTTCTTACTTGCAATGTTGATAACTAAGTAATTTAAGTTACAACACTGCAGAGGCTGAAGATATTAACCAAGCTGAAAAGAACAAGCGTCCTCCAATCAGCATTAGCGGAATCGAACCACTATGAAAGTAACCGTACATGCCAACCAATAATTACTATAGAAAGGTTTTAACTATGGCACTAACAACTAGCATTACCATCTTTTAGGGCTTATCCAACCCTATTAGCACTGGCAGAATCGAACTACCACAAAAGCAACCATGCGTGCTAACTGATTGAGAGAAAATCTTTTATAAAAAGGATATTGATAAATACTTTGTTAATAGGGGGAAAGTATTTATAGGGTCTATGACAACCCTATTGGCACTAGTGGAGCCGAACCACTATCAAAGTAACCGTACGTGCCAACTGTAAGTCGAATCGAATATATAAAGGAGTAAGAGATGCAAATACTCGCAATCTATAAG # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTATGTCATTTAACTTAGGTTCAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 2118-6179 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBEW01000007.1 Ligilactobacillus salivarius strain AH43324 AH43324_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2118 36 100.0 30 .................................... GTACGCTAACTCAGTTGTATTACGATAAAA 2184 36 100.0 30 .................................... TATAACTGCCTAAGATGTAGTAGAAGTCTT 2250 36 100.0 30 .................................... TATAACTGCCTAAGATGTAGTAGAAGTCTT 2316 36 100.0 30 .................................... TATACAAATACGTTAAAGCTAACGTGATAC 2382 36 100.0 30 .................................... TGTACTAGCAACAGCACATCAGATTGATAA 2448 36 100.0 30 .................................... TAACCAAGATATATTAAGCAATTCAACAAG 2514 36 100.0 30 .................................... GAAGTCGTTTGACGCCAAGTTAAAGCTTGA 2580 36 100.0 30 .................................... TTGCCACTTCGATAAGCGGCACTAGCAATC 2646 36 100.0 30 .................................... CAACGGGCGGTCAACGAACAGCACCCAACG 2712 36 100.0 30 .................................... GAAATTCAAGGCTACAATGAAGACTAAGAA 2778 36 100.0 30 .................................... CAATTCTTCCAGCTTTCCATTAGTTTCAAC 2844 36 100.0 30 .................................... GAAGTTGCTATATCAATCAATTAAAGAAGA 2910 36 100.0 30 .................................... TACCGTGGGACAAGCAAAAGAAAGATATTT 2976 36 100.0 30 .................................... GAAAGCATCATACTTGACTACTGAGCCTTT 3042 36 100.0 30 .................................... TCAAAAAAATTGAGTCCAAAGATAATTAAT 3108 36 100.0 30 .................................... TATTATATAAGGCTTTTCAAGGTGTTATGT 3174 36 100.0 30 .................................... TAAAAATATTGAATATGTAGGGTTTACTTA 3240 36 100.0 30 .................................... TGATACTTGGAATAATGCAATTATATATCC 3306 36 100.0 30 .................................... CTCAAACATTGCTTATTATGTATCTGATGC 3372 36 100.0 30 .................................... AGTGTAGATGTTAATACAATGTTATGCTTA 3438 36 100.0 30 .................................... TGGTTTATATGGTTCTATGTTGTTTACCAT 3504 36 100.0 30 .................................... AAATTCAGCTAAGATCGGCGCTTTGCCTAA 3570 36 100.0 30 .................................... TAACTTCTTGGCAATCTTGTCAGCATCCAC 3636 36 100.0 30 .................................... AAACAGTGCCACCAACTTGTCCAACTTGTG 3702 36 100.0 30 .................................... TCTAGTTGTTTTATCTTTAAATGGTTCTAG 3768 36 97.2 30 .................G.................. CGTTGTTTCTAGCGAAGATGAAACAGGCAA 3834 36 100.0 30 .................................... GGATTGTTATATACGATTGATCCCTATAGG 3900 36 100.0 30 .................................... CGAAAAAATCCTTGAGCAAGTAACTACTCA 3966 36 100.0 30 .................................... AAAATGCAAATATTAAAGATGGTTATAGCT 4032 36 100.0 30 .................................... GCAAGCATGCAGATATTGCACATTATCATG 4098 36 100.0 30 .................................... AATCTCGTTAACAATGTACGTCACTGGCGA 4164 36 100.0 30 .................................... TGCAGATGACATCATATTATACGTGAATGA 4230 36 100.0 30 .................................... TAGATGAATGGTTAGCATTGCATAAAGAAA 4296 36 100.0 30 .................................... ATGGCTACTTGCCAACTGGCGTAAGCGTAA 4362 36 100.0 30 .................................... TGGCACTTCAATCACAAAAACAGTAAACAA 4428 36 100.0 30 .................................... ATGATAATTTAACGATTGATAGCCCTACTA 4494 36 100.0 30 .................................... GTATATTGGAAAGCATGTAAAAACACGTCA 4560 36 100.0 30 .................................... AGTTAACGGCGAAAGCTCAACAACGACCGG 4626 36 100.0 30 .................................... TGCTTATATTGTGTTTCCTGATTACAAGGA 4692 36 100.0 30 .................................... ATAACGATTTTAATTACATCTGGTTGCTTT 4758 36 100.0 30 .................................... TCCATCAATTCCATTGTTTTCTTCCTCCTC 4824 36 100.0 30 .................................... AGGAGGAAACAGAATGGAGACAATAAAAAA 4890 36 100.0 30 .................................... TCATAGCTAGGAACATAATGCTTAATTGCT 4956 36 100.0 30 .................................... CGTATGTGATAGTAGATCCGTAGCCTTGCG 5022 36 100.0 30 .................................... CAAGCAAACCTTTATAAGACTAGTGTTTGA 5088 36 100.0 30 .................................... AACATTTCATTGTTGGGTCAATGTTTGGCT 5154 36 100.0 30 .................................... ATTTTCGTTGCTGTTTCCAACACTACCTCC 5220 36 100.0 30 .................................... GGATTGTTATACATGATTGACCCTTACAGG 5286 36 100.0 30 .................................... ATCAACAGTTACTTTGTCAGTGTCAATGAA 5352 36 100.0 30 .................................... AGAATTGAGTTTTAGCATAAGGCGTTGTAT 5418 36 100.0 30 .................................... ATACGTATATCGGATACTTTATGGGAACAC 5484 36 100.0 30 .................................... ATTCAATTAATGCGACTGATATGTTTAAAG 5550 36 97.2 30 ......T............................. TGGCAAGTAACCATATTGTCCGTTACCTCT 5616 36 100.0 30 .................................... CATCACTTTCTTTTCCACTTAGAACTTCAA 5682 36 100.0 30 .................................... CGTCTGTCCATTGCTTGCCTCCTGTTTACG 5748 36 100.0 30 .................................... AGACAAACTTTTAGAATTAATAACGAGTGT 5814 36 100.0 30 .................................... TAACTAGTTGATTTAAAAACAACTCTACTT 5880 36 100.0 30 .................................... TTCAGAAATATCATCAGTGTTGTTACGTAA 5946 36 100.0 30 .................................... AACAATCCGTATAAATTGTGTGATTTCTTG 6012 36 100.0 30 .................................... AGGATAAAAAATAAATTAAGAATTAAAGGG 6078 36 97.2 30 ...................................C TCTTCGTTCAACCGCTTAATTGATTGGTTT 6144 36 75.0 0 ......T...A.........T...AG...CG..G.C | ========== ====== ====== ====== ==================================== ============================== ================== 62 36 99.5 30 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACT # Left flank : AACAGACCGAATTAGTAAAAAGTATATGAATGTATTGATCAAGAAGATTATTGAAGACATCACAGATGATGAAAGACAAGCAATACTAAAATCAGTAAATAGTTTGTATGATCGTATTCGTGAGATTTTGTATAAAATTGATATACCCTTACAAGTAGATTATGACAATGATTTAACGAGATTATTCAAGTATTGTCAAGTACATACAGAGACGTTGCTATGGAAAAATGCATATGATAGAATATCCTCAGATGTTAAATTACATGTGGAACTAAATAGAAAACGAATTATAGGTCTAACCAATGTCGTACATTATCTTACCAAAGAAGAGTTTCAGGAACTTGTAAGTCTTGTTAAAGCGACTAACTTATTAGTATTTATAATTGAATTCACAGAAAAGGATGGTCAGAGATTCTTTGAAAACTGTGATAATTACTATATTGATGAGGATTATGTTGATTGGCACTAATGAATCGTTAAATTTTGATTATAAAATAACT # Right flank : CTGAAAAACAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTAAGATATATTATGGTTGATAACATAATATTATATGATATATAATATAGTTGAAGATAAGATATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTAGCGCTTTTAGATAAGCAAGATTATTATGGATACTCATTGACACAGGATATGCAAAGAGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGAAGGTTAAAGAATAATGGTTTATTAGAAACATACGATCAATCATATCAAGGGAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGTGACTATAAAGTTAGTTTGGATTCAATTTTCGAAAAAACTAGAGAGGGGGAATAATAATGAACTCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //