Array 1 10922-10282 **** Predicted by CRISPRDetect 2.4 *** >NZ_LING01000032.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N46831 N46831_contig_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10921 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 10860 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 10799 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 10738 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 10677 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 10616 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 10555 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 10494 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 10433 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 10372 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 10311 29 96.6 0 ............T................ | A [10284] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGATGTGTATAAGAGACAG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17705-16274 **** Predicted by CRISPRDetect 2.4 *** >NZ_LING01000021.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N46831 N46831_contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17704 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 17643 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 17582 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 17521 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 17460 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 17399 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 17338 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 17277 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 17216 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 17155 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 17094 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 17033 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 16972 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 16911 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 16850 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 16789 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 16728 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 16667 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 16606 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 16545 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 16484 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 16423 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 16362 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 16301 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTAG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //