Array 1 2727-3115 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QECX01000004.1 Vibrio cholerae strain BD59 BD59_S59_L001_R1_001contig_4_consensus, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	============================	=================================	==================
      2727	    28	 100.0	    33	............................	CAACAAAAAAGCCCTCAATCGAGGGCTTAGCGT	
      2788	    28	 100.0	    32	............................	AAACGAAGGTAAGCGCGGACCACAAGCTCGAA 	
      2848	    28	 100.0	    32	............................	GTATCAATATGGCGCGAGAGATTTGAGTCACC 	
      2908	    28	 100.0	    32	............................	TATATTAACAACCAGCTAATTTTCTCGGATAT 	
      2968	    28	 100.0	    32	............................	CTCAGTTTTTGCGCCAAGCAGGTAAGGAACAA 	
      3028	    28	 100.0	    32	............................	AAACTTGGCAACACGAAAAGAATTAAAAAAAC 	
      3088	    28	  96.4	     0	........................A...	|                                	
==========	======	======	======	============================	=================================	==================
         7	    28	  99.5	    32	GTTCACTGCCGCACAGGCAGCTTAGAAA	                                 	       

# Left flank :   ATGCTTTTACTAATGTTACAAAGCATCAAAAGGTTATAGGATTAACGTCTTCAGTAAAACTAGTTGATTGGGATAACGGTATTTTAAACGTGACCTTAAAGGGCTTTAACCGTAACTCAAGTATTTCTTTTTTACCCACAAGGTTAAATATGTTCCTAGAAAATGACTATCAAGCCTTGGGCGTACTGTATCTAAAAATAGGTCAAGCAATTAATCGTGAGACAGAGAGCTAACAAACGCCTCAAGAGGGACTGTCAACGCGCGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTGAAGGTTGTTGTGTTTGAGTTTAGTGGTAATGCGTTGTCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAGTTTTAAGTTATTGATTTATATTGATAATAAATCTAGTAAAAAATAAAAAGTTATTTTGGGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA
# Right flank :  ATATTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGCCAACGCGTGGCGTTTCCAGTCCCAATGAGCCGTGGTGGTTTCGGTTGTTGTGTTTGAGTTTTGTGGTAGTGCGTGGCCAGCCCCTTAGGCGGGCGTTATATTTTCAAAATATTACAGGGTGAAGAATGTCGGGAAAAGTAAAAGTTAACAATTTATATGTGCCTTTAGCAATTTGTCCAATGCCAAATTATGAATTTGGGAATGGGTACCGAATGTATGATTGTATTTTAAGTAATAAAAATAAACTAGTTTGGCGTCCACGGAAAGTAGAATATAAGCAGGCTCATTTTCGTGCTGAAATTTACGAGGATCTTAAAACTGCTATTGAAAATGCTAATGAATATAATAAAAAAACAGAAAGTATAGTAAATGATCTTGGGTTGTCAGATGTTGAGGCTAACTCATTATTTTTAAGAGTAGATAAGTTCATTACCTGTATGAT

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTCACTGCCGCACAGGCAGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [8,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-8.00,-7.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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