Array 1 7795-6481 **** Predicted by CRISPRDetect 2.4 *** >NZ_SACP01000034.1 Methylobacterium sp. TER-1 NODE_34_length_63044_cov_53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================ ================== 7794 29 96.6 32 ...C......................... TCGGCGAGCGCGGCGACCACGGCCTTGTCGTT 7733 29 96.6 32 ...C......................... CTCCGGTACTTCCCGACGGCGAAGGATCGGGC 7672 29 96.6 32 ...C......................... TAGGCACCCATGGCGCGCGCTCCCTTCGGCTT 7611 29 96.6 32 ...C......................... CGACCGGGCTGTCCGAGCGCGCCGCCGAGCAG 7550 29 93.1 32 ...C.....A................... GGGAGCTGCTTTCCGACCCAGGTGCAGCTGGC 7489 29 96.6 32 ...C......................... GCGCTACAGGTCTGCGATCCGCGGGGCGGTCG 7428 29 96.6 32 ...C......................... GAAATCCGGGGCGGCGCCGAAAGGTGCGAGAG 7367 29 100.0 32 ............................. AACTCGACCCCGCTGTCCGGCGTGACGCCCAT 7306 29 100.0 32 ............................. GCGTCGGTCGTCCCATCGGAGCGAGGCGGGTC 7245 29 100.0 32 ............................. GCGCAGGACTGGCCGATGGCGGATAAGATCGC 7184 29 100.0 32 ............................. CCTTACTGCGACCGCCTCCTCGCGGCGCTCTC 7123 29 100.0 32 ............................. GCTGACGGCGTCCTCGGACCGGCCTCGATGCG 7062 29 100.0 32 ............................. TTCAAGGCAGCCCTCCGCATAGACGATCCCTA 7001 29 100.0 32 ............................. GGGATGTTGCAGGCGATGCAGCGGTCGACGTC 6940 29 100.0 33 ............................. CGGTCTCGGCCTCCGGCGAGTCCCCCCTCGCGC 6878 29 96.6 32 ....C........................ CCCCTGACCACGATCCTCGCCGAGATTGAGCA 6817 29 96.6 32 ....C........................ GGTCAGAACTACATCAGCATGGTGCGCTCGGA 6756 29 96.6 32 ........T.................... CTGGAGAACGCGCGGGAAGCTGCTGCGCTGGA 6695 29 93.1 32 ........T...A................ CTGATCGACCAGACCAGTTCCGCCCATTCCTC 6634 29 96.6 96 ............................T CAAACCGGATCCGCTGCGGGTCTTGCACCGAGGCAATCCATGCTCGCAGTTCTCTGGGGCGACCGGCCCAGTGCCACTTTTTCACGGGGAGACGAT 6509 28 72.4 0 .....TT.....T..-.A..A.....A.T | T [6499] ========== ====== ====== ====== ============================= ================================================================================================ ================== 21 29 96.4 35 GTGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : GGCCGCGGCTGGCCGGAGGAGGGTTCGGCCCCGACCCGTCTCGCCGAGGCGCGTCGCACCCTCCGTCTCGCGCGGGCGGACGGCGACCGGCTCGTGCCCTGGCACGCCGATCCCGATCCACGCCTCGCCTGGGCGCTCTCGGAGGTCTCGGTTCCCGAACGGCGGCTGCGCGGCCGCGACAATCCGGAGCCACGCTGGCGGGAGGCAGCCGACGCGGCCCGCGCCGGCTGGGGCCGGTTCGAGGACGCCGTCATCCTGCTGCCCCTGGAGCCGCAGCAGGACGGTTCATGGCAGGGCACCCTGCTCGACGCGGACGGCGACCGGCTGACGCTGCGCTACGACGGGCGGACCGGCCTGCGGTTCTGAGGGGTAACCCCCTGGCCTGCGTCCCCAATCCGGATCATGATCGAGCCTCCGGCGCCTGTCGCGAACGAACGCGGAACGTTGGTGGGTTTTTTGACATCGTGAAAGGTGAGCTGCATCAACAGCTTCCCGGAAGA # Right flank : GCACGGTGGCTACCGCAGGGGCCTTGTGATCCAGCGGATCGTCTGCAACCCTTGCTACAAGGTCGCTTGAGTCGACGCCCTGGGGGCTCTGTGATTCTACCGTTCTCCCTCCTGGCCGAAGCCTGGATCCCCGTCCTGCGCGCCGATGGAGCGCAGGACCTGATCCGGCCGGCGGCCATCACGGCGGATCTCACGACGAATCCCGTCGTGGCGCCCGCCTGGGGCCGGGCCGATTTCGATGCCGCCACCTGCGAATTCCTCATCGGGTTGCTGGCGACCACCTGCGGCCACCGCGCGGACGAGGACGAATGGGAGGCGTGGTTCCGCTCGCCCCCACCGCCCGAGAGGCTGGACGAGGCGTTCGCCTCCGTCGCGCCGGCCTTCGTGCTCGATGGCGACGGCCCGCGCTTCGGACAGGATCTCGACCCGCTGGACGAAGGCGAGGCGAGGGCGGTCATGCAACTCCTGATCGAGGCGCCGGGCGCGAACACCGTCAAGCG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : GTGCTCCCCGCAGGCGCGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10803-11162 **** Predicted by CRISPRDetect 2.4 *** >NZ_SACP01000038.1 Methylobacterium sp. TER-1 NODE_38_length_56975_cov_48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 10803 31 100.0 36 ............................... ACCTTCGAGGGCCAGTCCAAGAAGGAGGTCGCCGCG 10870 31 100.0 35 ............................... AGCGTGAGCAGACGTGGATCATCAGGTTCGCGAGG 10936 31 100.0 35 ............................... TTGTAGAGCAGGTCGCCGTCGTTGAAGAGCGGGTG 11002 31 100.0 33 ............................... GGGGCGATCATGCGGCAGCCTACGGTCCCGTAG 11066 31 100.0 34 ............................... CACGACGGGATCCGCCGTCCCATGGGCGTCACGC 11131 31 93.5 0 .............................GG | G [11143] ========== ====== ====== ====== =============================== ==================================== ================== 6 31 98.9 35 GTCGCCCCCTCACGGGGGCGCGGATCGAAAC # Left flank : CTGGAAGTGAGGCGGTGCCCTGCTGATGCTCGTGGCCTACGACGTGAACACCCAATCCGCTGCCGGACGGCGGCGCTTGCGTTGCGTCGCTTCGCGCGAGCCTGCCTCGATTACGGCCAGCGGGTGCAGAACTCGGTCTTCGAGTGCGAGGTCGAGCCCGCGCAATGGACGGAGCTGCGCGCCCGCCTCGTCGGCGAGATCGATCCGCAGCGCGACTCGCTCCGCTTCTACCGTTTGGGCGCCAATGCGCGCGGACGGATCGAGCATGTCGGCGCCAAGCCGATCCTCGATCTCGACGGGCCGCTGCTCTTCTAGCCGCTTGCGCGAACCCGAAGCGGACGGCCTTCGCCCGGAGCGTTCGCGCATCGCCGAACCCCTTGCGGAACGGCACTTTTCGACACCGTGTCGGTTCCCGCTCCGGCCCGGACCGCCCCGGCAGGAGGCGTTCGCGCAAGTGGGTCGTATTTCGTTTTCCGAGCAGGCGGTTAGAGTGCCGGCCG # Right flank : GGCGTCGGGCCGCCGATCCGCGAGCGGCCTCACGCGATGATGTTGTCCTCCGGCGCGCGGTAGGCATCGTCCTACAGCCTCAGACCGGTCCGCGGATCGTAGAAATCCATGTCGTCGTCGAGGCGCAGCAGAGCCCCTTCGAGCAGGGGGTGGACGGGCCGCAGGCGGCCGAGCGCTAGCCAGCGCGCCCGCAGCGTCGGCGGAACGGGCACGACGTAGGCCTGCAGACGGCGCAGGTCGTCGCCGAGGGGACGGTCCATGGCGGCGATCCGGGACAGGAGGGTCTGCGCCCGGTCGTCGTCCGGGCTGGCCGGCCACGGCACGATGACCGGCTCCATTGTGTCGTCGATGAGGCGGAAGGCCCGGGCGATGCTGTCGAAAGGGAAGGCCTGCGTCCTCGCCCGTTCGGCGATGGCCGGCAGGATCGGCCAGGTGTCGCCGTCCAGCCGGGGACTGTCGAACAGGTGCGGGCCCTTGCGCCAGTAGACTCCCCGGAAATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTCACGGGGGCGCGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCCTCGCGGGGGCGCGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.50,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 9721-8533 **** Predicted by CRISPRDetect 2.4 *** >NZ_SACP01000062.1 Methylobacterium sp. TER-1 NODE_62_length_9927_cov_57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9720 29 100.0 32 ............................. TAGGAGCCGACAACTCCGAGCTGCCCCTCTGC 9659 29 96.6 32 ...C......................... CCCAGGGTCGAGATACCGCCGCTGACATGGCG 9598 29 100.0 32 ............................. ACGTCGAGGTCGGCAACCAGCCGGGCTCCGAC 9537 29 100.0 32 ............................. TTGGGCGCCGGGGTCAGGCCCTTGCGCCAGGA 9476 29 100.0 32 ............................. GGCGAGTGCTTCCCGACCCAGGAGCAGCTGGC 9415 29 100.0 32 ............................. CCTTACGGCAGGCTCTGGCGGCGGCTGCGGAC 9354 29 96.6 32 .................C........... CAATGGGGCCTGATCGCGCCTCTCGCGGGCGC 9293 29 100.0 32 ............................. CCGTCCTCGACGGGATCGATCCGGACGATTTC 9232 29 100.0 32 ............................. GATCCCGGCTTCGCGCCAGTGCGGTCGGGCAC 9171 29 100.0 32 ............................. ACCGGCACGTAGAGGCTGCCGGCGGCGCGCAC 9110 29 96.6 32 ....C........................ CTGAGAGCCTTCTCGGTCATGTTGAACACCAT 9049 29 96.6 32 .........................G... ACGTTCTTCCAGCCGCTGCCGGCGGCACCGGC 8988 29 100.0 32 ............................. GAATGGCACCTCGTCGCGATCCGTACCGAGAT 8927 29 100.0 32 ............................. GCCATTGCCGCGGCCGAGAGTGGGACGCAATG 8866 29 100.0 32 ............................. CCGCACCACCGCCGCACCTTGCGCCAGCTTCA 8805 29 96.6 32 .................A........... ATCCCGTTCAATATCGCGGACGGCGATAACGA 8744 29 89.7 32 ..T.........TC............... CCCGGCGCTTCTCTCGTCGTGATGCGGATGAC 8683 29 96.6 32 ..............T.............. GCCGGTGTGGTCGGGAGCGCCGCGTGATGTCC 8622 29 100.0 32 ............................. CGACGCGACACGCAATGGCGCGGCCGAAGGCG 8561 29 93.1 0 A.......................G.... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.1 32 GTGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : CTCTCTGGAGGGAGCAGGCTTTGGCGACGTTCCGGCGCAAGCGACACAGAACGAAACCTCGCTTCACTCTGCCGCCACCCTGGGCCTACGCCCTCTGCACCGCTGCCTGAATGGCCAAAGTCGAGCTGAGGCCTGGAACAAAAATCGAACATCGGGGCGCTCTTTGAGATCGTGAAACGTCAGTAATCGCAGAGACTTCCAGGAAG # Right flank : CTCTGGATCATGATCCGGTTGGACGCGGAAGCCCTCGTCGAGGCCATCCGCGCTTGGCATGCCGTGTCCCGACACACGTTCGTGGTCTTCTCGGCGAGCCCCTCCCACAGCCCCAACGAGCAGGCGCCGACTCTCGCAGCGGCACGGAATGCCGCCGAACGGGCGGCAAACTGCATCACCGATCTCATCGGATTGAACGCCGTGCTGGCGCGCATACCCGCACGGCCACATCGCCAAAATCGGCCACATCCACGCCCAGCTAACGCATTGAAAGTCGGCACGTCTCGCCAGGTGGATTCTGCTCACATGCCGCCTCCGGTGCCCCCGACGTGCTCCAGCTCGACCCCACCCTGAAACCGCCCCTTCGCACAGCAAGCACGTCCACGGACGCTGCTGGTGACCACTTCACGGATCGGGCTTCGCCGAAATCTATAGGCCGGAAGCTCCACAGCGGCTCAGAACATCCAAGAGAGCTCGATCCCGTACAAGCTTGCCTGAGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //