Array 1 104916-106939 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN046803.1 Neisseria lactamica ATCC 23970 scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 104916 32 100.0 35 ................................ CAGAAAAAAGAGAAATAATCAATAACATTTTCAAG 104983 32 100.0 35 ................................ AGTAGTAGAGCTGCCAAATGCGTTGCCTTGGGAGC 105050 32 100.0 34 ................................ TTAGGGACGAAATATATAAGATACTACTTTAATT 105116 32 100.0 35 ................................ AATTTTAGCCGCCCCGCAAACCTAGAGGAGCAAGC 105183 32 100.0 34 ................................ TATAGATTGGTTGTCATTCACGATGCACGAAGAT 105249 32 100.0 35 ................................ CGCCAGCAGTTCGGTGGCGCGTTGCTCAATACGGG 105316 32 100.0 34 ................................ CCGCCACAAATACCACCACCGCCTCGCTGCCCAC 105382 32 100.0 34 ................................ AACGAAATCAACAATTATCTCGGCGGCTTTGGTA 105448 32 100.0 34 ................................ TTTGCCAGTCAAACAATGTTGGCAGTGGTGGGCG 105514 32 100.0 34 ................................ CGGCGCGGGAATGGGTGCCGGGCGGAAATATTTG 105580 32 100.0 35 ................................ GTATTGAAGAAACCGGTTACAGATACGCAGCAAAC 105647 32 100.0 34 ................................ CATGAAAAAACCTTTTTCGATAAATACGGCGTTC 105713 32 100.0 35 ................................ TAGCACTAGAAGTTGATTTAAGCGTCTTTAAAGGC 105780 32 100.0 35 ................................ GATACGGGGGCGGTAGTCGTCCTCTGTTAAATAGG 105847 32 100.0 34 ................................ AGCGCAGCCGTAGTCAACGCAGCGGCAGCCAAGG 105913 32 100.0 34 ................................ ATCAAGCCCTATATCCAAGAAACAATAAACCACT 105979 32 100.0 34 ................................ ACACATGCAAAGCAGCTTGTAGCCTATCTAGGAC 106045 32 100.0 35 ................................ AAAAAACCATACCGACCCCCACGGCGCAGCAGGAA 106112 32 100.0 34 ................................ AGTTGACGGCGTATGCCCCGAACCTAAAAGCGTA 106178 32 100.0 35 ................................ CTTGTCTTAATAGTAACAACTGCATTGAGACCGTA 106245 32 100.0 35 ................................ TTTTTGAACAACGTTTTAAAAACAACAGAGCAGGA 106312 32 100.0 34 ................................ CGTCTTCGCCGCGCTGAAAAACGCTTATTTCGCC 106378 32 100.0 35 ................................ CATAATCGGCGGTTTTGTTCGATGCTCCGCTTGGA 106445 32 100.0 34 ................................ GTTCCGTGGTCGGCAATCTGTCCCTGATTGTAGA 106511 32 100.0 34 ................................ GTCCCATTTATAGTCGGAATTTGTCCTATCATAG 106577 32 100.0 34 ................................ AATAGATACAATCGAGCATCGGGGCGACGCATAA 106643 32 100.0 34 ................................ AACAAAACCAACCAACGAGTGTGCGGCATATCGG 106709 32 100.0 35 ................................ AAAATAACCTTTGAAAGGCAGAAACATGAACAAGC 106776 32 100.0 34 ................................ AGACGCACGCCCGAAGCATCAACGGCTTGGAGGC 106842 32 100.0 34 ................................ CGACAGACGGGGAAGCACCGCCCCCCAGTGTCCC 106908 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 31 32 100.0 34 TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Left flank : CATGGAGGGACAAGAAAATGCTGATGTTGATAACTTATGATATTTCGTTGGAAAATGCCGAAGGGCAGGCAAGGCTGCGGCGCGTAGCGAAACTGTGCCAAGACTACGGCGTGCGCGTGCAGTATTCCGTGTTCGAATGCGACATCGCACCCGACCAATGGGTAGTTTTAAAAGACAAACTTTTAAAAACCTACAACCCCGAAACAGACAGCCTGCGCTTTTACCACCTGGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGCGCAAAACCGGCGGTCGATATATTTAAGGACACGCTGATTGTGTGAATCGCCAACCTGTTGTTCCCATAAAAATGCGGCAGGGTTGGCGAATCTGGGTTGTTCTTTAACAATCAGGATATTGCAAATGTGGATATGGCGGATAAGGCTGTGCTATACTCATGTTTGTGCTTTTTTCGGGAGTTTGGCGAAGTCGGGGCTGCGAAGCCTGATGTAGTAAGGCTTTCGGAAGAGGCT # Right flank : CGGCGAGGACGACATCCGCTTCCTGCGGGAACTGGGTTTGTAAACCTTTAAAGGACAATCTGATTCCCCTACGGCTTCAAACCCTGTCGGGGCCGACGCAAAAATGCCGTCTGAACTTGGTTTTAGACGGCATTTTGTTTTAATCGGGAATATCTTTGTTAAAAAACGGCTTGATGTTATCTGCACATATTAATATAATGATAATTATTATTAATCAAATATGGAAAATAGTAGGGATGTGTAAACCGAATTATGGCGGCATCGCCTTATTGCCCTTACTTTTGGCATCTTGTATCGGCGGCAATTTCGGCGTGCAGCCTGTTGCCGAACCAACGCCGACCGAGCAAACCCCGGCAGGTTTCAAACCGTCCAATCCTGCGGATAAGCCCGCTCCGGCTCCTGCCAAACCTTCTAAAGAAACCACGCCGGTCAACCAGCCCGCCGTTGGTGCGGCAATGCGGCTGCCAAGGCGGAATATCGCTTCCTATAAAAAAGACGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2014027-2012802 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN046803.1 Neisseria lactamica ATCC 23970 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2014026 36 100.0 30 .................................... TCGTTGTCGGTGCTGATTAAAGTGATTTTG 2013960 36 100.0 30 .................................... AAAGACGGAGAAAGCCTGTCGGAACGCTTC 2013894 36 100.0 30 .................................... TCGGGATTGACATTATAGAAAATAAACATG 2013828 36 100.0 30 .................................... CGAACTTCATTGATGTTGCGTGCGATAACA 2013762 36 100.0 30 .................................... CAGGGAAAACGCGCGCTCTTGATATGGCGG 2013696 36 100.0 30 .................................... GTAGGGAGTAACGAGCCTGATGAAGTAGGT 2013630 36 100.0 30 .................................... CCCTGACGCTCAATTTTCCCTGCCATACAG 2013564 36 100.0 30 .................................... AAAGACGGAGAAAGCCTGTCGGAACGCTTC 2013498 36 100.0 30 .................................... AGTGTCAGCAGCAGCTTGTTCCCCTGTACA 2013432 36 100.0 30 .................................... GTAGGGAGTAACGAGCCTGATGAAGTAGGT 2013366 36 100.0 30 .................................... CCCTGACGCTCAATTTTCCCTGCCATACAG 2013300 36 100.0 30 .................................... AAAGACGGAGAAAGCCTGTCGGAACGCTTC 2013234 36 100.0 30 .................................... AGTGTCAGCAGCAGCTTGTTCCCCTGTACA 2013168 36 100.0 30 .................................... CCGGGCAAGGAAAAAGCCCTGTTTCGTCAG 2013102 36 100.0 30 .................................... CGAACTTCATTGATGTTGCGTGCGATAACA 2013036 36 100.0 30 .................................... TCTTTTTGGATACCCCTTGCCGCCCTGCAA 2012970 36 100.0 30 .................................... CGACGACGTTGCCGATGGATTTCGACATTT 2012904 36 100.0 30 .................................... TAGGGAGTAACGAGCCTGATGAAGTAGGTG 2012838 36 86.1 0 .........................G....AA..AT | T [2012808] ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.3 30 ATTGTAGCACTGCGAAATGAGAAAGAATAAGGATTC # Left flank : CACCTTGGCTGCCATCGACAAAATGGTTTCGTCATTTCAAGCCGGTGTAACCGATAAAAACGCCAAACAACTGAAACTGCCTGAAATCCTACCATTGAAAGAATACCGATATGAGTGAGGCCAAATTTATGAGGATTATCGTCTTCTTCGACCTACCGGTTATCACGGCGGCAAAGCGCAAAGCCGCCAATCAATTCCGCCAGTTTTTATTAAAAGACGGATACCAAATGCTCCAGCTTTCCGTATACAGCCGTATCGTCAAAGGCCGAGATTCGTTGCAAAAACACCACAACAGGCTGTGTGCAAACCTGCCGCAAGAAGGCTCAATCCGCTGTTTGGAGATAACAGAAAAGCAATATGCCGCCATGAAACTGCTGTTGGGCGAACTGAAAACCCAAGAAAAAAAGGTCAATTCAGACCAACTATTATTATTTTAAGCCCATTTTTTCAGAACAAATAAAACGGGAAACCCTTATAGAATAAGGATTCCCCGTCGAAGT # Right flank : GCGCCCCTTATGGAGCGCAATATATAAGGCTTTATCTTCAAAGGCTTTCACGGTTGCATCCCTTATCCATCAGTTCTTTAACAAACAATATGCCGTATTCATACTCTTCGTTTTCGGTCTTTTGTTTCAAAGTCGGATTGCAGATATAAAAAGAAACTGTTGTGATGCATTGGGATTCGTAGACTTTATCCTTGAACACTTTCATGATGTATGCTTTGTGGAAATATACGTGTTCGGGATTGACATTATAGAAAATAAACATGATTAAGCCCCTTCACTGGCTAGAGTTAAGGGGCTTTACAAGGATTAAAAATATGCGCCCCTTATGGAGTGCAATATATAAGGATTAAAAATATGCGCCCCTTATGGAGTGCAATATATAAGGATTAAAAATATGCGCCCCTTATGGAGTGCAATATATAAGGGAGCTACAACTAATATATAAGGATTAAAAATATGCGCCCCTTATGGAGCGCAATATATAAGGCTTTATCTTCAAA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTAGCACTGCGAAATGAGAAAGAATAAGGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //