Array 1 161657-160852 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDNL01000018.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SE389 389_contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 161656 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 161595 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 161534 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161473 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161412 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161350 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161247 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161186 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161125 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161064 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161003 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160942 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160881 29 96.6 0 A............................ | A [160854] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 179770-177789 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDNL01000018.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SE389 389_contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 179769 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 179708 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 179647 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 179586 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 179525 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 179464 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 179403 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 179342 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 179281 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 179220 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 179159 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 179098 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 179037 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 178976 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 178915 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 178854 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 178793 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 178732 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 178671 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 178610 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 178549 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 178488 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 178427 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 178366 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 178304 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 178243 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 178182 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 178121 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 178060 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 177999 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 177938 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 177877 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 177816 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //