Array 1 517184-513608 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBZD010000001.1 Allostreptomyces psammosilenae strain DSM 42178 Ga0310440_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 517183 29 100.0 32 ............................. ACCACGGATACCTCCGCGCCGAGGAATCCTCG 517122 29 100.0 32 ............................. ATGCCGCAACCGATGATCCGCCGGCCCATCCA 517061 29 100.0 32 ............................. GAGGGCCGGACCGCGACCGCGACTGAGCACGG 517000 29 100.0 32 ............................. CTCTTCGACCGGCTGAGACCGAAGGAAGCTCC 516939 29 96.6 32 ............................T CCTTACGCGGCGTCGTGGCCGGTTGGGCCCGC 516878 29 96.6 32 ............................C CCGTTGAGCCCCTACTACGGGCTGCTCGGGCG 516817 29 100.0 32 ............................. CGCGCGGACGTGTCCCCGGATGTTGCGCAGAC 516756 29 96.6 32 ............................C GTATCCTCGCGCTGGAATCCTCCAGGCAGAGG 516695 29 100.0 32 ............................. CACACCCCCTAACGTTTGACACGCACCACTTC 516634 29 100.0 32 ............................. TTCGCTCGGCGCACGAGCGCGTCGCCGAGGCC 516573 29 96.6 31 ............................C CGGATCAGCCGTCGCTAACCCCCCATGAAGC 516513 29 100.0 32 ............................. GGGGTGTCCGCGTGACGACCCCGCAGCTCCCG 516452 29 100.0 32 ............................. CGCTCGGGGAGTGCCGGGCCGCCGTTCAGGTA 516391 29 96.6 32 ............................C CTGATTTTCGAGCTGCGGGATTCCGCCGGCTC 516330 29 100.0 32 ............................. TCCCTGTACGGCAGTACACGCCGAGCGAGCCG 516269 29 96.6 32 ............................T CGGGTCGCGCGCCCGGCCCCCGGGCTGGGTGG 516208 29 100.0 32 ............................. GAGGTGCCGGTGAACGCGCCGCGAGACCGGCC 516147 29 96.6 32 ............................T GGGCCCGCGCCGTAGTAGCGACCCTGGGCGTC 516086 29 100.0 32 ............................. CGATGCGCGGATACGGGTATCTGGCGGGTCAT 516025 29 100.0 32 ............................. GCTGGTCAGGAGCCGGGGAGCGGTCCCGCTCG 515964 29 100.0 32 ............................. GCCCGTCACATCAGGCACCGGACCTACCCCGG 515903 29 100.0 32 ............................. CCCAGTCGCGCTTCCCTTGAAAGATGTCATAC 515842 29 100.0 32 ............................. GGGGTGCGAAAAGGACCAGCACGCCGACTCCG 515781 29 100.0 32 ............................. TTCCTCCGCGTCCGCCTGGCCGTCGACGTTGC 515720 29 100.0 32 ............................. ATGCCCACTGCATCCGGTGGGAGTTGTCGAGC 515659 29 100.0 32 ............................. ACGTTCGCGGAAGCGGATGCGTGGCGCTCCAA 515598 29 96.6 32 ............................C TCGTAGGCCATGAAGCCGTCGTCCAGCGCGGT 515537 29 100.0 32 ............................. CTGCCGTCGGCCGCCATCGCCGCGGTGGTGGA 515476 29 96.6 32 ............................C CCTAGTTGACGTGCCGAGTATGGGTCGGCATA 515415 29 96.6 32 ............................C CCGGCAGTCTCCGCCGTGTTGCGGGCCAGACC 515354 29 96.6 32 ............................C GCCGAGGCCGCCGCCCACCTGGGCGTCTCCCC 515293 29 100.0 43 ............................. CCCCGCGCCCCGGGTGCGACACCGGCAATGCCCTCGTCACGGC 515221 29 96.6 32 ............................C ACGGAGGAGGGCACGGACATCACGTACCCCGC 515160 29 100.0 32 ............................. ACCCCTGTTCGGGGGACGTCGGCGGGCAGCTC 515099 29 96.6 32 ............................C GGGGCATGGACGGCCGGCGCGGTGCCGGCCGG 515038 29 96.6 32 ............................C CTCGTCCGGCCTGCGACCTTCGGCGGCCGTCA 514977 29 100.0 32 ............................. CCGCTGTCCAGGCGCTCCTGTCGCCACCGACG 514916 29 96.6 32 ............................C GGCCGGTTCCTCCTGAGGCTGCCCGTCGAAAT 514855 29 96.6 32 ............................T CCGACTCCGCCGAGGCCGACGATTCCTCGGCC 514794 29 93.1 32 .................A..........A CCTTGAGGAGAGCTAGCGCATCTGTCCGTGAC 514733 29 100.0 32 ............................. CATCCATGCTGCGGCCAGCCAGGCCGGGACGA 514672 29 100.0 32 ............................. AGTCATCGGAGCAAGGGGCGCTCGACATCTGC 514611 29 96.6 32 ............................C CATGCCGGACTCCTTCAGTCACGGCGCGGTCG 514550 29 100.0 32 ............................. CCGTGCAGGATCTGCTCGACGCTGCTCGGGCC 514489 29 100.0 32 ............................. GCTGGCGGCGCTGGCGAGGCCGATGATCGGCC 514428 29 100.0 32 ............................. ACCTCCTCGACACCTTCAACGAGTACAGCACG 514367 29 93.1 33 ..........................T.C CGCGGAACGCATCGCCAACAAGCAGCTCGACAG 514305 29 100.0 32 ............................. GGGACATGGATATGAGCGATACCACCATCGCG 514244 29 96.6 32 ............................T CTGCCTGGGCAGAGCCGTGACGGCGCCGGATC 514183 29 96.6 31 ............................T CCTCCTGGGGATCACCTATCGGCCGGCAGCG 514123 29 96.6 32 ............................C GGTTCTTCGGCAACCGGTGCGTCGCCGGGTCG 514062 29 96.6 32 ............................C TCGCCGACATCCCCCGCTCGACCCTCTACGAC 514001 29 96.6 32 ............................C TTACCTACGAACTTTGGTATGTGGGTGGCTTC 513940 29 93.1 153 .................A..........C GCCTACATCCCCGGCATGGGGTCGATCGCGGAGTCGGCCTGCGTGCGGGGATGGTTCGTCGTCGGGGCGCCGCGCCCGGCCCTTGCCGCGGTCGGCGCCACACACACACGCGGGGGTGGTTGGGGGTCACCTGCCAACTTTCGCAGGTGACCA 513758 29 86.2 32 ........A............GC.....T TCCAGATGGCCTGACGAGAGGATTACCATGGC 513697 29 93.1 32 ...A........................C TGGGCCGAGGACGAGCCGCTGGCCGCGCGCAG 513636 29 89.7 0 ..........................TTT | ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 57 29 97.8 34 GTCGGCCCCGCGCGTGCGGGGATGGTCCG # Left flank : GCGGCACGGACAACGGCAGCGCCCTCCGGCCACGTCCGCTGGAAAGCGGGACTGGCCTTCCCGCAATCGTGAATGCCACACAACCACGCGAAGAAGCGGCGCCCCCGCCCTGGCCCTCCCGCCACCTCGTCCAACAACCGCCGAGTCGACGGCGCCAGGAAGTGATCCCACATACACTCCGCCACAGCCGCCGTATCCAGCAGATGCGACACCAGCAGGTTCGTCCTACCGCCCGCCTTCTCCTTCGACTTCCCCCACAGCACCCCTAACAGGGCCACCAACTCCCGGTCCACCCCAACCACCCACCCCTCCGTGGCCAACTCGGCACTCCCCGTGCACGCTTACAGCGGCACAATAGACCCCGCCACCGACAACACGCCTACCACCCGAGCGAACCCATGCCCCCACCCTCACCAACCCCAGGTCGAGACCGCAGAACCGCCGCCACCCAACTAAAGAAAAACAGCCACCCCGCTCGATAAACCAGCAGGTCAGCAAGT # Right flank : GCCACCACAGAGCCAAGTCGCTCCACCAGCCACACCCTGCTGGTCCAGCTGCGCCTCGACCGGACAATGGTGGAGCTGCGACAGGGCTTCACCAGGAATGTCCAGGGGCTGGGTCACCGGGGACTGGGGGACCTGGAGGTCCGGATCCGCGACCACGCCGACCTGGAACGGGCCGGCGACCTGATCCGCCGGGCCCTGGAGACGAGCTGACGGCAGCCGCTCATGGGCGGGGCGGCCGGGAGCCACTGTGGTGGCTCGCGACCGCCCCGCTGTGTTCTGTCGGTGGGGTCGGTGGTGGTCATGCGGTGTCTCCGGGGCCGGCGAGGATGAAGTCGTCCTGGGTCAGTCCGTTCTCCTCGGCGTTCAGGCGGGCCTCGGCGATGGTGGCGTAGTGGTCGGAGAGTTCCACGCCGATGAACTGGCGGCCTTCGCGCAGGGCGGCGACGCCGGTGGTGCCGGAGCCGGTGAAGGGGTCCAGGACGGTTCCGCCGGGCGGGGCG # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.18, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCGTGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCGTGCGGGGTTGGTCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 527075-528688 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBZD010000001.1 Allostreptomyces psammosilenae strain DSM 42178 Ga0310440_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 527075 29 100.0 32 ............................. CTGGCCCTGTCGCGTCCCTTCCTCTGCGGTAA 527136 29 96.6 32 ............................G CTCCGGATGCCCGTGGTGAGCATCAGCAGGAG 527197 29 100.0 32 ............................. TTGCTCCGCCCGGGTGGCGGGGAGAGGAGACC 527258 29 96.6 32 ............................G GCGCGCGAGCTGAGCTCCCGGCCCGGGGTGGC 527319 29 100.0 32 ............................. TTTCTCCCACGCGCCTCCCGCTGCAGCGGTGC 527380 29 96.6 32 ............................G TTCGGCGGTCCGCGCGACCGCCCACGTCGGGG 527441 29 96.6 32 ............................G GGTGAGTCCTTCTCGTCGGCAGGCTGGCCGCG 527502 29 100.0 32 ............................. GTGTGCGGCGCGTCCACGGGGTTGTTGAGGCG 527563 29 100.0 32 ............................. GGGGACGCGCTGGACGTCTCCGCCCTGGATGA 527624 29 100.0 32 ............................. CGCTCGCGGTGACCAGCACGACGACGTCGCAG 527685 29 100.0 32 ............................. TTGGACCCGGTCTACGACGACATGGTCCGTGC 527746 29 96.6 32 ............................G GCGCCGGCAACCTCGCCAGCTTGCGCTGGCCT 527807 29 96.6 32 ............................G CCGGTGCCGATCACGCTGGCGATCGGGTCGTG 527868 29 96.6 32 ............................T GCCCGCCACGCCCCCGCACATCACACCGCTGC 527929 29 100.0 32 ............................. GCCCATCCGCGCGCCGGCCGGTTCCTCGACGC 527990 29 96.6 32 ............................T CCGCAGGGAACTGGGGTGGTCGCGCCGGATGA 528051 29 100.0 32 ............................. GGCATCCACCCCCTGCGCCTCGCCAACACCGC 528112 29 96.6 32 ............................G AAAACGCGCCGCACGACCACGAACGGCTACGA 528173 29 100.0 32 ............................. TGATCGGGTCGCGCGGAGTGCCCGCCATGGTC 528234 29 100.0 32 ............................. CCTGACGGCACCTTCGGGCCGGCGGACCGCCG 528295 29 100.0 32 ............................. TCCGCGCTGCGCTTGGCTCCGTAGCCGGGGTG 528356 28 89.7 32 .........-.G.A............... ACCTCGATGGTGGGCCGCCGGCGGGCCAGGGC 528416 29 100.0 32 ............................. GGCGAACCCGCCGGACTGTGGGTCATCCCCGT 528477 29 93.1 32 ................T...........G AGGGGCCGCGGGGCCTCGTCGGCCTGGCGGCG 528538 29 100.0 32 ............................. TCCACAGCCGTCAACGTGACCCTCATCCTGGA 528599 29 100.0 32 ............................. GGCGCGAGGCCGCCCCCGAGGTAGCGCATCGG 528660 29 93.1 0 .....................G.....G. | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.0 32 GTCGGCCCCGCACGCGCGGGGATGGTCCC # Left flank : CCCGACGGCGTCGACTTCGACACCCCCGAGACCAACGAACTGTGGGACGAACGCACCGGAACCGTCCCCGGCGGCGTCAACTGGTCTTCCACCCCCATGGACCTCGACCTCGCACCCACCATCGTCCCGGCCGACATGGGCCAGCAGCACATCACGATCATCGGCCCCGACCTCGACGGAGTCCCGACCGACGAGGAACCTCGATGACCGTCATCGTCCTCATCGCCGCACCCGACGGACTCCGCGGCCACCTCACCCGCTGGATGGTCGAAGTCAACGCCGGTGTCTTCGTCGGCAACCCCAGCCGCCGCATCCGCGACCGCCTCTGGGACCTTCTCGCCACACGCATCGGCGACGGCCAAGCCGTCCTCGTCGAACCCGCAGACAACGAACAAGGCTGGGCCGTCCGTACCGCAGGCCGCGACCGCTGGCGCCCCACCGACTACGACGGACTAATCCTCTCCGCCCGAAACCGCCGATAAAACCCCAGGTCAGCAAGT # Right flank : CTTTCCGACCTGCTGGACCGGTTGCTGCTCCTGGGGGACCTGCGCCTGGCAGTGCCTCGCCAGGCGCAGAATGGAGGGACGTAGAGGCCTGCTGCTCTCACATGCCTCTCACAGGGCTCTCACGGACGGGGTGCCACGAGGTGTCCCGTCGTGTCACTGGCCGTGGACGGAACAGGCCCTGACCTGCGCTTCGGGAGGGGAGCGGACTGGGCGGCGTCCCCTGTCCCACACTGGGGGTCAAGGGGTCGTGGGTTCAAATCCCGCCGTCCCGACTCGGAGCCAACTCCAAAGTCGCAGGTCAGGGCCCTGTCTCACTGTGGTGAGACAGGGCCCTCGATCGTTTCCGGGGGCTGCCTCTCACGACTTCCCACGTTCGGTGTCGATCATGGTGTGGAGAGGAGTTCGCCCAGCTTCTCGCAGCCGGCCTTGAGGCTCTGGGGGAGGTGGGGTTCTTTTCTTGATCAGCACCTGCGCGCCCGCGGTGCCGACCCGGAAGACGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.90, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3092421-3093180 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBZD010000001.1 Allostreptomyces psammosilenae strain DSM 42178 Ga0310440_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3092421 29 100.0 32 ............................. GGATAGTCCGGGTCGGGCCCTGCCGGTAGACA 3092482 29 100.0 32 ............................. GGGCGGGGGGTGGGGTCAGCGTCGGTGGAGTA 3092543 29 96.6 32 ............................G TTCGAGGCGCAGCACGGCAGCGACCCGTCCCG 3092604 29 96.6 32 ............................G GCCGGGCTGCGTCGCCCGGCCTGGGTTGCCGG 3092665 29 100.0 32 ............................. GCCGCCGCGAGGTCCTCGGCCTGGGTGCCGAA 3092726 29 100.0 32 ............................. TCGGCCGGCCCGCCCCGGCGGGCGAGATGTAC 3092787 29 96.6 32 ............................G GGATAGCGTCCAGTCGCGAACCGCGACGTTGG 3092848 29 100.0 32 ............................. CGGAGAGGCCGGGGGGAGCAACCACCACAAAA 3092909 29 100.0 32 ............................. TGACCGGCGAGCAGATGCTGGCCACCGTGCGG 3092970 29 96.6 32 ............................G GAGGTGCTCCGGGCCGGTGGTTCGTCAGCCGT 3093031 29 100.0 32 ............................. ATCTCCGGCCCCGGACTCACGCGCGAGATCGT 3093092 29 93.1 31 ..........T.................G GACCGCAGGTCACGGATGCCCCGGGCGTGCG 3093152 29 72.4 0 A..C.........TT......G.CC...A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 96.3 32 GTGGTCCCCGCGCACGCGGGGATGGTCCC # Left flank : AGGACACCGAGACAGCAGGACAGGGAAGACACCCCCCAATGTTTCAGCCCTCACGGCCCGCTGCGTCGGTACGGTCCAGCACCGGCCTTCCGCATGCGGGGCATGCGGGGATCGTTCCTAGGAACGTACCCCGATGGTGGTGTTGCACTGCTCCCTGGTGCACTCGGGGCGGGCTTCAAGCGGATGGACGCGGCCGAAGCGGGAGTGGGCGATCAGACGCCGGAGGAAGGCTGGAACACGGGGGCGGGACAGCCGGGACAGCCCTAGATGGCGCTGTCTCGCCTGTTTGTGCAGGTCACGAGGACACCGAGACAGCAGGACAGGGAAGACACCCCCTGACGATCACAAGCCCCGCTCTTGGCTTCGGCTGGACAGGCTGCTTCACCCGAGGTGGTGAGAGTATCCCTTGACGCTTTCTGTCCGATTCGGGGTGTATGCCGGAATCGGTGATAGTGATGCAGAACGGCCTCCGGTCCGGATAAAGTCCCAGGTCGGAAAGT # Right flank : AGATTGACGCTCGCCAGGCGGTTATACGCCAGCCACCAACCGGGCGACGTCGGTCGGCTGCCACACGCCTTCAGCGCCCGGTCGCCCAGCGAGGTAGTCGGCAGCCTGCTGCGGGCTCCACCCATGGGCGCTGATGAGGCCCGCCGCGAGGTGCCGGAGGTAGGCCGCTGAGGGCGCGTTCCAGGCGACGTCGGAACTTCCCCATGGCGCGGTGAAGGTCAGCACGGGATGGTCGTCAAGGGTGCCGGGACAAACCAGCGTCTCGTATCGCCCCGGTCCCATCTGCGCCCGGCCGTGGGCTAGAACCTCGCTGAGGTCCAGTTCTTCCCCGGGCTCCCGGTACATCTCCTGAGCCGCGATGTCCGCGAACTGCCGGGGGGTGAGCAGGTACGCGCGGGCCGGCATCTCGCCACTGGCATCGGGATCGTAGAAGGCGCGGCCGCCGGTCCACACGGGGGACTCGGTGGCGAAGTACAGGGTGCCCGGCAGCATGACGGGTA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //