Array 1 17171-18998 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKKW01000041.1 Vibrio paracholerae strain 2017V-1176 2017V_1176_contig41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 17171 28 100.0 32 ............................ ATACTGCTTTACCGCCTTGGTACTTGACCACA 17231 28 100.0 32 ............................ CGATTGGTCGCCTTGGTGTTGCCTTACTGATC 17291 28 100.0 32 ............................ TCAATTGGCTGTGCAATTCTTGATGTTAAAAC 17351 28 100.0 32 ............................ GTGAACGATGAAGTTGGTGTGGTTAAGTATTT 17411 28 100.0 32 ............................ ATACATCGATCACGCAGGATTAAGCAACCGAT 17471 28 100.0 32 ............................ TGCTTTACTATGCCGAGGATGATTACCTTGAT 17531 28 100.0 32 ............................ ATACTTGGAACCGTCCGTTACTCAGTGCCGTA 17591 28 100.0 32 ............................ AAAAACTATAGGTGGTGGAACTAATCCTGAGT 17651 28 100.0 32 ............................ AGCAAGTTCGTGGCCTGCTGATCACGGTCTGC 17711 28 100.0 32 ............................ GCCATTCTCGAATGCACGCTGAATCGCTTCAA 17771 28 100.0 32 ............................ AGAGCAGCAACTCACTATCAGTCACATTGCGG 17831 28 100.0 32 ............................ AGTTTCAAGAAGCTGACCGTTTGTAAGGCAGA 17891 28 100.0 32 ............................ GCAAAATGAGCGCTTGTTCGATGCCGTTCTCT 17951 28 100.0 32 ............................ CAGCACATTACCACCCATGATCAGCGTCAAAC 18011 28 100.0 32 ............................ CCATTGATATAGCTTCTTCATGCCGCTTTTTG 18071 28 100.0 32 ............................ TATAAGCAGAGAACAGAGCAGCAAGCGCTAAG 18131 28 100.0 32 ............................ GTGCGCGCCATCATTTCAGGCGACAGCACGCC 18191 28 100.0 32 ............................ TGTCTATGAAGTGACAAAGCGAATGATTGTGC 18251 28 100.0 32 ............................ TCGACCAGCTTCTCTCCAATCCTCTCCGCAAT 18311 28 100.0 32 ............................ CGTAATCGTTGGAACCAGCCGCACACCCTTAC 18371 28 100.0 32 ............................ TTCTTATTCAAAATTCCCCAAGCCATCGGCAT 18431 28 100.0 32 ............................ TATCCAGTGGGGCGTAGACTTAAAATCGACTT 18491 28 100.0 32 ............................ AGTAAGCGCTGTTTGAGTATTCTCCTACAAAC 18551 28 100.0 32 ............................ TGTATGAAAAGCTCCCTCAAGTCATCGTAGAA 18611 28 100.0 32 ............................ ATCTTGCCCAAGCACGTCAAACTCGGATAGGT 18671 28 96.4 32 ...........C................ TCAAGCGAACCAAGCCCGGTGCGCTTCGGTGT 18731 28 96.4 32 ...........C................ GCTCAGCGCCGCTCCGTCCGGCGCGAGAGTCC 18791 28 96.4 32 ...........C................ AAAATTCGGCGTTGAGCAAGCGCTTAACGTGG 18851 28 96.4 32 ...........C................ ACTACAGGAGGAATGGCGCGGATTACGTGATC 18911 28 96.4 32 ...........C................ TAGAAGGACGGAGCTTTTCGCGCATCTTTGGT 18971 28 96.4 0 ...........C................ | ========== ====== ====== ====== ============================ ================================ ================== 31 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGGGTAACTTACGTCAGCTTTGTACGCAAGCAGGTGAAATCACCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCATTGTGCGCTTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCGCAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGCGCTTTTAAAACAAACAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGTTTTTTACCCTAACAGCTTGTTGCAGCTTATTCCTATCGGTTTATTCTATT # Right flank : ATCTGCTTTCCCCATTACATGGGTTGTCTATGTGATGGGGATTCGCTCGCTAGCGGCCTGCCTGTAAATTCAAGTGGTATGTGTCTGGTACGCAAGGTTTTTCTGTACCCCAAGCCGTACCCAGAGCGTTTTTTGCTACAATGGAAATGCCTTCAAATCCTTATTTAATGCGCTCTAACATCACGCCCGCTTCCATGTGGTGGGTGTAAGGAAATTGGTCGAAGAGAGCAAAACGCACCACTTGATGGGTTTCCCCCAAGACTTGTAAGTTCTCTTGCAGCGTTTCTGGGTTACAAGAGATGTAGATAATGCGCTCATAACCTTGCACCATCTTACAAGTGTCGATATCCATGCCAGAGCGTGGTGGGTCGACAAAAATAGTGTTGCAGCGGTAGCTTTGCAGATCGACTCCCGCATCCTTCAAGCGATTGAATTCGCGTTTACCTTCCATCGCCTGAGTAAACTCTTCAGCCGACATGCGAATGATCTGCACATTGTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //