Array 1 927750-927589 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWJD01000002.1 Clostridium neonatale strain NEC25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 927749 31 100.0 35 ............................... TATATAGAAGCGACTCTACTTAGTTTTAGTAGGGT 927683 31 100.0 33 ............................... ATGCGCATTGTATTTAATGCTGATAACTCTTCC 927619 31 96.8 0 ..............................N | ========== ====== ====== ====== =============================== =================================== ================== 3 31 98.9 34 GATTAAGATTAACATGAGATGTATTTAAATA # Left flank : GAATTTGTTCCCTTCAGTTTAAAGGAGGGGATGTAGTGGGAAAAGTAATGAACTATAATTATGCATTTGTATTTTATGATGTTAATGAAAAAAGAGTTCAAAGAGTGTTTAAGGTTTGTAAGAAATACTTATCACATTTTCAAAAATCAGTCTTTAGGGGAGAAATGTCGCCGTCAAAATTAATTAGATTCAAAACAGAATTAAATAAAGTAATAGATAAAAATGAAGATTTTATTTGTATTATAAAGCTTATGAATGATAATGTATTTGGTGAAGAAGTACTTGGATGTTCAGCCAATAATACAGGAGAAGATTTAATAATATAAATTTACCAGGTAGAAATTTCAGCTATCTTTGTTAAAGCTAGAAATGATGGGATATTTGATAGTTTTAACATATTTTTATCAGAAAAACTTCATTCATTGGTAAATTTTTTGTGATGTGGTATTATTACTAGTATAGAGGAATTTTTGAAGTTTAAGAATGCCTAAATCGCGTTG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTAAGATTAACATGAGATGTATTTAAATAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATAATCCATTAGATTTCATATCTTTATCATCACAAACAATTAAAATTGACATTAGATGAAATTATAAAGTATGAAAAATGGTAATAAATAAGCAGAGATAAAGAGCATAATATTCTTGATAAAATCAAATTTTAAACCTATTAACAGAAAGGAAAAACTGGCCATGCTAAATAAAATTGCGTTGATTGTTATAGATATGCAGAAGGATTATATTGGAGAAGAAAGCAGACATAATTACTATCCTAATACACTTATAGATAAGGTTAATGAAAGAATTGCCATAGCAAATAATAATGGACAAATGATTATATATGT # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAAGATTAACATGAGATGTATTTAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 955207-955565 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWJD01000002.1 Clostridium neonatale strain NEC25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 955207 30 100.0 36 .............................. TTGGAGAACAGCGTTAAATTTAACGCAAGATGAAGT 955273 30 100.0 34 .............................. CCATCCAATTTGATATAGCTCCTGCTAATATTTG 955337 30 100.0 36 .............................. GAGTTTTATTAGTTTAGCCTTAGAAAATGGATATTC 955403 30 100.0 37 .............................. ATACGAGAAGTAGAAAAAAATGAAGTGGTTCTTGACT 955470 30 100.0 36 .............................. AATTAAAAAAAGACGTGAAGAATTAAACTTGTCTAA 955536 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 100.0 36 ATTTAAATACATCTCATGTTAATCTTAATC # Left flank : TACGCTTTGAATAATATTCAGGTATCTTATACGAATTGTGACACTCAATAACATTTTTAATTAACTCATCTTCACTTGTATCTTCAATGAATTCTCTTATTTTACCCTCTTCAAATAAAATCTCTACCCCAAGCCTAGCATGATCAATTGACTTAGAATCATTAAATGTTCCATATCTTCTTACCTGTTCAAATCTTCCTATATCATGTAACAGTCCAGTAAACCATGCAATATCAATTTCTTCATTTGTCATCTCTAAGCTTGGTGCTATTTTTTCACATAGTTCACTTACACGATATGTATGATCTATTTTTAATTTTATTTTTTCATTGCTGGTATCATACTTCTCAACATAATCATTAAATACTTTTTTAGATTTAATTTTGTCTATATACATCTTGCAGACTCCTTTATTTTTATAAAAAATCCTTTTGTATTATAAAACCATTAGTTTTATATTTTTAATATTTTACATAATAATTAGAAAGCTATTTAATCAT # Right flank : CCTTAGAAAAATAGCCATTCTAAAAATAAAAGAATTCTTCTATCCAAGAAATAACGCTATTCTTCAAAAAATTTACCAAGTGTTTTCTATTTTTTCATTTTTATTATAATGAACTCAGATAAAGTCACTATTGTTGCAGTGTTTTACCTAATTATAAATTAAAATCGCTTGGTAAATACAATGTATACTTTAATAAAACATCAATGATTATTTCACAAGCTTTTATTTTTATGGGCAATGTTTTGCTTCACATGCTTTATATCCTGCTGCTTGTGCTTTTGATCTGCTCATAGCTGTTGAATTTTTCATTCCATGAGCATTTGCTGTATTATGATATATTCCTTTGCTAGATACATAAACTGTATCTGATGCATTCTTTACAACTACACTTGAAACATCATTATTATCAATAGTTGAGGGTGTATTTACACTAGTATTTTGTATTTGAGCTGGAACACTTGTTGTCCATGCACCATTACTATTTAAATAATATCCTTCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTAATCTTAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 1559721-1559428 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWJD01000001.1 Clostridium neonatale strain NEC25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1559720 30 100.0 35 .............................. TTCTTTGGAATCTATTTTCTCCCTTTTCCATTGTT 1559655 30 100.0 36 .............................. ATATGATAATACATTTTCCTTTTAATTTTAGGTACT 1559589 30 100.0 36 .............................. AAATGCTGAAGAAGTCTCTTTATTAAAAGAATATGC 1559523 30 100.0 36 .............................. TGTGTATATCCCTTATCTATTGGATTATTAGTAGTA 1559457 30 70.0 0 ......T.....T..A..TA.A..AA...C | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 94.0 36 GATTAAGATTAACATGAGATGTATTTAAAT # Left flank : TTTAGATCTGATAAATTTATTTGCGCCAAAAATGCCATTGCTTTTCCCTCATTATCCAAAGGATAATCTTCAATACATTCTAAATATGGACATCCTCCCAATTTACTATCCCAAGGTTTAGTCTCTTCAATTTTAAATGTTATTTCATTACTATACCTAGTATTCTCCATGATAATAGCTTCATGCTCTTTTAAAATCTCAGGAATCTCATATTTAATCATCCCATCAACCCTCCAAATGAATATTTATTTCTATGCTAATTATAACATATCTTGTAAATAAAACATTATCCATAATCTAAATAGACCTGCTCATTTCATTAATTATTTACCAGGCCATTTATTTACTTTTCGGTTTAAATTAGAGTGACAAAGCCACTTTAAGCACTTTCCTCTATTGCTTGCATCAATATATAATTTCGTTGGTAAATTTTTAAAGAATATGCTACTATAGTCATATACAGAGAATTGCTGAATTTAAAAATGGCTTATTTGCGTTGG # Right flank : TTTAGTTAAGTCACCCAAAGTTTTTATTCTACTTATATCCAGGTAAATACGTAATATTTTTGCCACTATCCTCAGATATAGTTAATTTAGACAATTACCAAGTAAAAACACCTAAAAACTAAATAAAACAATAATTAGATAAATCTAGTAATTTTACTTGATTGTATTTCTACAGACTCATATATTAAATCATTTTATTTATCTATTTTTGCATATTTTTTCAATATTGCACTGAATTTTATTAAATAATTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGTATAGCATTTAAGCAACTAAAGAATAATTGCATTTTAAAAAATTTATCATTAACTATAATAAAATTCTTATCCTTTATTGTGTAAATAACTTTTTTATTAAAATAGNNNNNNNNNNNNNNNNNNNNAAATAATATTGGCATAATTACACCACATATAATAAATAG # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAAGATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //