Array 1 433553-434373 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPEQ01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SE144 NODE_2_length_642857_cov_67.6164_ID_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 433553 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 433614 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 433675 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 433736 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 433797 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 433858 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 433919 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 433980 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 434041 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 434102 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 434163 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 434224 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 434285 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 434346 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 450631-452294 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPEQ01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SE144 NODE_2_length_642857_cov_67.6164_ID_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 450631 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 450692 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 450753 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 450814 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 450881 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 450942 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 451003 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 451064 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 451125 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 451186 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 451247 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 451308 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 451369 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 451430 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 451491 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 451552 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 451613 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 451674 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 451735 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 451838 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 451899 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 451960 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 452021 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 452082 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 452143 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 452204 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 452265 29 96.6 0 A............................ | A [452291] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //