Array 1 254658-251823 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBRK01000002.1 Salmonella enterica subsp. diarizonae serovar Rough:r:z strain NY_FSL S10-1628 NODE_2_length_463156_cov_43.4423_ID_5764, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 254657 29 100.0 32 ............................. ATTTCATCGTGCAGGGTAACGCTAATCGGCAC 254596 29 100.0 32 ............................. GACGAATTAACTGCTGCACGTATCGATCGTGA 254535 29 100.0 32 ............................. AGTGGAAACAGCAGATATTCAACGCCCAGATC 254474 29 100.0 32 ............................. CTAATCGTCAGGCAGATCAGGACTGGGAGGAG 254413 29 100.0 32 ............................. AAGAGGCGGTGGCCGAAAAACTCAGCCATGAG 254352 29 96.6 32 ............................A CTGGTTACATCAGTTGGCGTTAAGAATTGCGC 254291 29 100.0 32 ............................. GCGATATTGCAGGCGCGATACTGTGCGCCATT 254230 29 100.0 32 ............................. ACGCCATCGCCCGTTATGACCTGACACCGGCA 254169 29 100.0 32 ............................. TGAACCGTGACAACTGGGAGAAGGCAAAAGCG 254108 29 100.0 32 ............................. TTTTTCTCCTTAGTCCTTAAAGCAGGTATCCA 254047 29 100.0 32 ............................. GTTTCCGGTTCTGGGGCAACCGCTCAACTGAT 253986 29 100.0 32 ............................. TTGGGGAGTTACATCAGCAGGGATACACCGCC 253925 29 100.0 32 ............................. CCGGCTCTCAGCAGGGTGACAATCCGTTTGTG 253864 29 100.0 32 ............................. CGGCGAACCCCACGCTGCGGTAGATTTGCCCG 253803 29 100.0 32 ............................. GCCGGGGTGATAACAGATGCAGTGGGAAGGAG 253742 29 100.0 32 ............................. ACATACCAACAGTTCTGCGTCGATCCTCCACA 253681 29 100.0 32 ............................. CACAGGCAGCCGGTGAGGTTATAGCGCTGGTA 253620 29 100.0 32 ............................. GTAAACAGGGTAATACCCTGATTTATTCTGAA 253559 29 100.0 32 ............................. TGGCGCTGATCGATCGCGTCATCGGCGTTAAA 253498 29 100.0 32 ............................. GAGATTCTCAGTGTAGAGCAGGTTGATTACTG 253437 29 100.0 32 ............................. GGCGGTAATCCGTCAAAAGTGGCCCCAAAGGT 253376 29 100.0 32 ............................. CACTGCGTGAACCCGGATTGGTCATCGGTCTG 253315 29 100.0 32 ............................. GAGGGGTCAATTATTCTGGTTGCTCAAATGTT 253254 29 96.6 32 ...C......................... CCCCACGCAACAACGTTCTCAGTAAAATCGGA 253193 29 100.0 32 ............................. GAATAAGAGCTATCAACCCACGGCGTTACAGG 253132 29 100.0 32 ............................. CAAATTTGCATTATTGCGAATGACGTCTTGAG 253071 29 100.0 32 ............................. CCGCGATAGCTTCCACAAGTGCTGTTTGTGGT 253010 29 100.0 32 ............................. GTGACATCATCTGACGTCATTCTGGCGTTGTC 252949 29 100.0 32 ............................. GCAGATATCATCAGGCGACTGGAAAATGAACT 252888 29 100.0 32 ............................. GTTTTGTTTTCCTGGCTCCGCAGCGCCAGCGC 252827 29 96.6 32 ............T................ CCATGGGAAACGACCCTGATTAATACCGGTGG 252766 29 100.0 32 ............................. TATCAGGTAGCACAGCGAACAAGAATACCCAA 252705 29 100.0 32 ............................. ATTTCCGGAGAGCGCAGGGCGAATAATGCCAA 252644 29 100.0 32 ............................. CCGTTCTTCTTCCGGTATGGCGTCCAGACGCG 252583 29 100.0 32 ............................. GTGAAACACGGCATCACGCTTTCAGGCAGTGA 252522 29 100.0 32 ............................. AGGGTACACCGTTCCGTTACAGCTTCAGTGCG 252461 29 100.0 32 ............................. TCGCCGCGGGTAGAAATTTACAGCATTGATGA 252400 29 100.0 32 ............................. GAAAGATGCCGGCTGCCTGCGGCCAGTACATC 252339 29 96.6 32 ...........A................. TTACCGATAGACAGGCTCGCACTCGCGCAGTT 252278 29 100.0 32 ............................. GCCAACAACATTGAGCCAGCTATCTCGGCGCA 252217 29 100.0 32 ............................. TTATTTCTTCGTCTGTTAGTTTGTTATTTTTC 252156 29 100.0 32 ............................. TTGCCTTACATGGACAACGTTGTGTGGAAGAG 252095 29 100.0 32 ............................. ATGATTTTCTCCTCAATTACCCGCTATAATAC 252034 29 96.6 32 .............T............... TTTGCGCTCGCTGACGTCAACAGCTTCTACGC 251973 29 96.6 32 ............T................ CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC 251912 29 96.6 32 ............T................ CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC 251851 29 86.2 0 ............T............G.TA | ========== ====== ====== ====== ============================= ================================ ================== 47 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACTGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGGGTTTATGTTGGCGATACATCAAAACGCATTCGGGAGATGATCTGGCAACAGATTACACAACTGGGTGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCGTTGAAAATCAATGAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGGCTTTCTGGAACAAATATATAGATTTAGT # Right flank : TTTTTACCAGCAGATCAGGATGTCTTTTCCGTCTTCGCCAGCTCTTTTACTAGCGGCAGCATTATCCGTACTACGTCGCGACTACGGCGCTCAATTCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAAGCATTTTTCGCGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACGGAAAGCACAGAAATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGAGCCCCGGATTGGTGCTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGATTATCGAAATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //