Array 1 6692-7980 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIGF010000019.1 Rhodothalassium salexigens DSM 2132 Ga0394281_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6692 36 100.0 30 .................................... GGCCTGAACGACAAAGCCGATCCGGAGCTT 6758 36 100.0 30 .................................... AGACCGAACCAACGGCAGGAGTAGCAGCAT 6824 36 100.0 30 .................................... GCCCTCCGGCGGCGCCAGCGACCGAGGGGG 6890 36 100.0 30 .................................... TGCGTGTGCTCGTCATATTCGTGGCGGATT 6956 36 100.0 30 .................................... TAGTTGTGTCGCCTGCCTGGCCTAGCCCGG 7022 36 100.0 30 .................................... CACCAGGCCAATGGCGGTGAGCACACCGGG 7088 36 100.0 30 .................................... GAAATACTTGGCGGCCAACTCGTCGGCGCA 7154 36 100.0 30 .................................... CGATGGTCGGAAAGACGTGTTGCGCGAGGG 7220 36 100.0 30 .................................... GACACGGTGAACCGGGTCACGTCCGAGCGC 7286 36 100.0 30 .................................... TCAACAAATTTCCTCATACCGCAGCAAATT 7352 36 100.0 30 .................................... TGTTTGCTCTTGGTGACGTTCAATATACGC 7418 36 100.0 30 .................................... CGCATCGAGCAAGGCCCGCCTGTTCGGGTC 7484 36 100.0 30 .................................... GTCGGCCAGATAGTCCAGCTGCTCGAAGCG 7550 36 100.0 29 .................................... TGTGGCCGCGGACTCTCGCAGTTGGTCGC 7615 36 100.0 30 .................................... ACAGGCGGTGAAAGCCGCGCCGGCGGCGGG 7681 36 100.0 30 .................................... GCCGACACCGACCGGCCGTCGGCGCGCGCC 7747 36 100.0 30 .................................... CGGGGCGTTGTCGATGTCATCCTGGGGCAC 7813 36 100.0 30 .................................... GAAAAAGCTGCGCGAAGCCTTTGCGACGGC 7879 36 100.0 30 .................................... CCGGCATTGGCGCAAGCCTTGGCGGGCGAT 7945 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 100.0 30 AGGCTAGCCGATTTGGGATCGAGGGCCAACCGCAAC # Left flank : TCCAATTGGTTCGGGGCGCTTCGCCCTGAACCCATTGGTCGAATGAACGGCATTGGGGGGCACCTCAAGAACCCGAGGGCAGCACAAGGTAATGTCTACGATATTGAGCGGGTATCGGATGATGTGGCTCTATGTGATGTTCGACCTGCCGGTTTTGACCCCTGACGAACGCCGTCGGGCGACCCGGTTTCGCAAGACTTTGCTCGATTGCGGTTTTGAGATGGCGCAATTCTCGGTTTACTTGCGCTTCTGCGATAGTAAGGAAACTGCCGAAACTCATATCCGCAAGGTGCAGTCAGTCCTGCCGCCTGCGGGTTGTGTCCACATCATCACTATTACCGACAAACAGTATGGAAACGCACGGATCTTCCAAGGAACGATGCAGAAACGCCCCCCAGAAAACCCGGATCAATTGGTGCTTTTGTGATCAATCGGGGTTGTTTTTTGGCGTTCAGAAAAAAAGAAAAAGCCCTGAAAAACAGGGCTTTAGGTGAGGATCT # Right flank : CGTTAGAATCACGGCTAAGAAAGGAAAGCCCCATATCATTTCTTAGTGCGCCGGCCAAGGAAAGGGGCCTTTTTCAGACATGGCGTTATCACCGGAGCCATCACGGTTGGGGCAGCGCGTGGCCATTTCGACCGCGGGTGAGGGCGCAGAGGCGTTCGTGCCCCCTCCCTTGCCGCCGGTGCCGTCTGTCAGGATGGACCGGCTCTACCGTCCACTCGAGCGCGCAAACCGCGCGATCGGACGGCTCGATGGCGTGACGTCCATCCTGCCCGACACCCCGCTTTTCCTTCAAATGTACGTTCGAAAAGAGGCGCTGCTTTCGTCGCAGATCGAGAGTACACAGTCATCGCTCTCCGACCTGCTGCAGCAGGTCCTTGAGAACGGCGACTGGGAGGCATGGCTGGAGTTTTTCCTCGACGGTATCGCCGAGACGTCTCTGCAGGCATCCGAGGCGGCGCGCGAGATTCTTGCGCTTTTCGAAGCTGATCGGCACCGGATCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGGCTAGCCGATTTGGGATCGAGGGCCAACCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 1 14318-17030 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIGF010000003.1 Rhodothalassium salexigens DSM 2132 Ga0394281_03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14318 29 100.0 32 ............................. GCGTCGCCGCCGCCGCCGACTCGGTCAGCCTC 14379 29 100.0 32 ............................. TCTCGGGCATCCTTCGCGATCAAAGTGTTGCC 14440 29 100.0 32 ............................. CGAGGCAAATATCGCGGCGCTGGCACGCGACT 14501 29 100.0 32 ............................. CTATAAAGAAAAGAAAACGAACACGTGAAAGA 14562 29 100.0 32 ............................. CCGCTTCTCGGCCCGAAATTTCGAGAGCAACC 14623 29 100.0 32 ............................. GTGTATAACCTGGCCTGGTCTCGGCCCAAGCC 14684 29 100.0 32 ............................. GCAATTGCGACGGCGGTGATCGGGGGCGTCAT 14745 29 100.0 32 ............................. GCGACATCTATGCCGCGATCCTGGAGATCTCG 14806 29 100.0 32 ............................. GCGCATTCGGCCTGGTCGACGACACCACCGAG 14867 29 100.0 32 ............................. GAGCGGCGCGGGCTGAAAACCGAGATCTATGC 14928 29 100.0 32 ............................. GAGCGGCGCGGGCTGAAAACCGAGATCTATGC 14989 29 100.0 32 ............................. TCATGGGCATCCTGCGCGACCAATGTGTTGCC 15050 29 100.0 32 ............................. TGATCCGTCCATGATCGACAATCAGTCAGATT 15111 29 100.0 32 ............................. TGCCAACGCGGTATGTGCTGACCGTGTTTCGT 15172 29 100.0 32 ............................. ACCCACGGCAACGCGCGAATAGCGAGTGCTGG 15233 29 100.0 32 ............................. GCCGGCACAACTGACCACGCGCTCGACTGGTC 15294 29 100.0 32 ............................. GGCGCCTATGTGGCGCCGCCGGCCGAGGATGA 15355 29 100.0 32 ............................. GGGGCGACGTGCAGCCGCCAGAGATCGAGGGG 15416 29 100.0 32 ............................. GCGTTTCGCAACGGAAATTGACGCCGGCACAG 15477 29 100.0 32 ............................. ATCAACCGGCAGGATCGGGAGTTGTGGGAAGC 15538 29 100.0 32 ............................. TCTGGGACATGATGTCCGCCAGCGGCGACCTT 15599 29 100.0 32 ............................. GCACGGGTTCGAGAGGCAGATCATCAAACCCG 15660 29 100.0 32 ............................. GGGGCTTTTTTATGTCTGCGAAGTCGATTGCG 15721 29 100.0 32 ............................. CCGTCCAAAAAGACCGAGGCGAAGATGCGCCA 15782 29 100.0 32 ............................. ACCGCCACGCCCCGCGCGGCGGTGACGGCTGA 15843 29 100.0 32 ............................. TAAAATCGCCGGGCCAATCTTTGACGATATCG 15904 29 100.0 32 ............................. GGTCGACGGCGCGTGCGTTGGCAATCGGAGGA 15965 29 100.0 32 ............................. GAATGGCGCGCTTATACATTAGACGGAGTCTA 16026 29 100.0 32 ............................. CGCAGGTCCTGGCTGTTATCCGTAAAATCCAG 16087 29 100.0 32 ............................. ATTACCCGCTGGCGCGCGCCCACCTCTCCGAA 16148 29 100.0 32 ............................. GCCGCCAGCGGGGACCTTTTGCGACCGCTGAT 16209 29 100.0 32 ............................. GCTTCGACGGCTAAAAGGGGGTCGGGATGGTC 16270 29 100.0 32 ............................. GTTTCTTTGCTCGGCTTTTCGATCTTGCCGTT 16331 29 100.0 32 ............................. GCAATACCTGCCAGAATAAGCGGACTCATCGC 16392 29 100.0 32 ............................. ACGCTGAACCCGTCTACATTCTTGTTGGACGG 16453 29 100.0 32 ............................. AATACGAGGTCCTCTGACTCGTCTTCCCTGTC 16514 29 100.0 32 ............................. TACGTGCGCTCGACCACGTAGTAGGTCGTGTC 16575 29 100.0 32 ............................. GTCGCACGTCACAAGAAAAATCGAGCGTGTCA 16636 29 100.0 32 ............................. ACTGGCCCACCATCCGCGTCGGTGACGTGAAT 16697 29 100.0 32 ............................. GCCGGCCAGCCGATCACCGCCACCCAGGGGTG 16758 29 100.0 32 ............................. GCGATCGCGCGCGAGCTGCAATGCGCGGTGCT 16819 29 100.0 32 ............................. CCGACCGCCTCGGCGATCTCCTCCAGGCACGG 16880 29 100.0 32 ............................. GGGCGAAATTGACCGCCGACGAAATTGCGCGA 16941 29 100.0 32 ............................. AAAGGGGCAAGCGAAAAATCGACCTTTTCTTC 17002 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 45 29 100.0 32 GTGTTCCCCGCCCACGCGGGGATGAACCG # Left flank : GACGCGCCGGCGGAAGCCCAACCGCCGGCGATCGCGGAGCCGACGTCGGGCGACATCGGGCACAGGGGATAGGCCGATGATGGTGATCGTGGTCGAAAATGTTCCGCCCCGTCTGCGCGGACGTCTGGCCGTGTGGCTGCTGGAGGTGCGTGCCGGTGTTTATGTGGGGGTCTATGGCCGCCGGACCCGCGAGATGATCTGGCGCCAGGTGGTTGACAATATCGGCGAAGGTAGCGGGGTACTGGCCTGGAACGCGCCCACCGATGCTGGGTTCGAGATCGAAACCTGCGGCCCCAACCGGCGCGAGCCGGTGGACTATGACGGTTTTCGGCTGGTAGCGTTCCGGCCGCAGGAACGGCTTGGCCCTCAAGACCACCAGAAAACCCGCGCCGATAATCGCTCCTGAAAACACTGAACTGGAACCGCTGAACAAAGGCGGAACCGTCGGTGGGTTGTTTGACATTGTAAAATGTGTTTAAGGTCAACGCTCTACAAGAAGA # Right flank : GCCCGGAGCGCAGAGCAAGCGCTGCGGTCTTGGGCGAAGAATGCGGGTGGATGCGAAGACCGGTCAAGCCGGAGAGGCGCATAAAACGGCGCTTGAGAGACCGGTACGGAACACCGTCGGGAGGGGGTGGCGGAGGAGGAGGGATTCGAACCCTCGGTACGCTTGCGCGCACAACGGTTTTCGAGACCGCCCCGTTCGACCGCTCCGGCACTCCTCCGCACGCGCGGTCACCCGTTCCCAGGCGAAGCGAGGGCGGACCCTACTCAAGCCACCGCACGCTGGCAAGGCCTGATTTGCGCTTTTCGACCCGACGTTGGCGCTTGACCGACCGGGCCGCTTGGCTATATCTAACCCGGTTCGGTGTCTCGGCGTGGGTCGGGGCACCGTTTGGCGTTCGCGTGCACGTCGGGCCAAGCGCCCCGACACCGGGCTTGGCCCGGCGCGCGAAGGTCCGACGCCCGGCATCGTCCGAGACCGCCCCGCCGAGCCGGGCGGCTTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCCCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //