Array 1 28635-28453 **** Predicted by CRISPRDetect 2.4 *** >NZ_QICQ01000013.1 Nitrosomonas eutropha strain Nm 57 Ga0181058_113, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 28634 37 100.0 34 ..................................... GCATTGCCAATTAATTTTTTTTTATTTACAAATT 28563 37 100.0 37 ..................................... CCGACAATGATTGTGTTGGCGGCAAGCGTACTTACAC 28489 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 100.0 36 GTAGCGCCCGGTCACCCGACTGGGCGAGGATTGAAAC # Left flank : GGTTATCTCCCTTTCCTGACCAGATAGTGATGCTGATTATTGTTACCTACGACGTTTCAACAGAAACCAAAGCTGGCCGCAAACGATTGCGACGAATCGCAAAAGTTTGCGAAAGCATCGGGCAGCGTGTGCAAAAATCCGTATTTGAATGCCGTATTGATTTGATGCAATATGAAGAACTGGAACGCCGCCTGCTGGCAGAAATAGACGAGCAGGAAGATAATCTGCGACTGTATCGGTTAACCGAACCAATTAAACTCCACGTAAAAGAATATGGAAATTTCAAGGCAGTTGATTTTGAAGGGCCACTCACCATCTGATACGCGCGAACCTGTAGCATCGGCCAAATACCGATCGGTTCGCGCCACATCTAACTACATGATACAGAATAGAAAAATAATTTACCCCTCCTTTTATCTGTTACATGCAGTCAAGGAAAATCTCATGTTCGCGCAAACTGCTCGAATTTTGATGATGTATCAAGAAGTTGTAACTGTACT # Right flank : ATGAGAATGATCCGGTGGAGCGCGCCGGGATTGAGTAGCGCCCAGTCGGGTGACCGGGCGCTACTCAATCCGTTGGAAGTGACTATACAACCTGGCGCGAGGTCAGCAGTAGCCCAGTTAAAAACCGCTTTGTGCGTAAAACCAGAGCTTTGATAGGCTTGTTTGGGTCACTATGCGCCTTATCATAGAAAAATCGGGCTTGGCTGAACCATCTTTCTAATCAGGAAAAATTATGCCACACTCATTCTTCTCCAAATTAGTGGATTCTATCTTTCACCAAAGTTATTTTTCATGCTAAAGTAGTAATCAATTACTTACTTTAAAGGTGTAGGCAGTGAATGAGCGTCCTCAATACTTGTCCGCTGAAGAGCGACGAGCAGCCACAGTGCAAGCAGTGCTCGATTTGGCTGCCGAGCAGAACCCGGCCGAGATCACAACCACAGCCATTGCTGACCGGATGGGTTTGACGCAGGGCGCGTTGTTTCGTCATTTCCCCACCA # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGCCCGGTCACCCGACTGGGCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.10,-15.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : NA // Array 1 20477-19740 **** Predicted by CRISPRDetect 2.4 *** >NZ_QICQ01000026.1 Nitrosomonas eutropha strain Nm 57 Ga0181058_126, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 20476 36 100.0 34 .................................... AACTAAGAACATTGACACCAGCATCTGACAGGTC 20406 36 100.0 35 .................................... CGTATGATGAGTAACCTTCTCCGCCTTCATTTACC 20335 36 100.0 33 .................................... CTTCACCTGATTGGGGATTGGCGTACGCGTATG 20266 36 100.0 35 .................................... CGTGAGGAAATCTTCCAATTCTTCTTGGTTGCAGG 20195 36 100.0 34 .................................... TGATCTCGTGAGCGTGCTTGACGGTGGCGGCAAA 20125 36 100.0 34 .................................... GTTTGGATCTTCCGCTTGCGCCCATTTGTACACG 20055 36 100.0 33 .................................... GCTGGCCATCCTTGATTTTAAACTTTCCAAACA 19986 36 100.0 36 .................................... CGCTGTCTTAAACAGCGTATTAATATAACTACTATA 19914 36 100.0 34 .................................... GAACGTTTGTATCATTTGGTATTGGGTCGAGTGA 19844 36 100.0 33 .................................... TTGTTTTGAGCCGGGTATATCGTGTACATAATT 19775 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ==================================== ================== 11 36 99.7 34 GAAACACCCATGCCCTGATTTCAAAGGGATTGAGAC # Left flank : ACCCGCGACGGCTGGCGCGCTTGCATCGCTATCTGGTAAAACGTGCCGTACCGTTGCAATATTCTGTATTTTTGTTTAGCGGAGATGATCGCCAGCTTGAACACTGCATGCAGGGGGCGATCGAACTGATTGATGAAAAAGTGGATGATTTGCGTGTTTATCCGTTGCCGAGTCGTGGGCTGAAGGCTCGCATCGGTCAACCCGCCTTGCCAGAAGGCATCCAATGGAGTGGATTGCCCACTGCGTGGTAGCGTACAGCTTTTCTGAAGCGATCAATCGTCTGAAAAGAAAGCCAGATCAGTTACAGTTCGCTCTTGTAAACATGGCGGGATCGTTCAAAATATCAGAAAATAAACCAACCTCAGATATTTAAACTTTACCGATTATTGTATTAATGGAACAAATAACCAACTGACAGGAGACATCTTGCAGCTTCTTACCATTTTTCCTCTACACCCTTTTCAAGGTATTGATTGTAAAGAGAAAAATGACAGTAGTCA # Right flank : TGGCATACAAGCCGGTATTTGTTTTCCTCGTCATCACGAAGCCGTCAGGCTATGGTGATCCACTACCACCGCTACCACTTCACTGGATTGCTTCACTCCTTGGGTGTGTGCAAAAGCAAGGGCAGTGAACTGGGTTGCTACGTCAGCCTGGCCACTACCTGCTTTCCGCTGCATTATGCTTGTGGGCGCAGTCGCAGTTAAAGGCTGGTTTGCTCACAATGGCACGTCAGCTCACCAAGACAAGACGCTGTATGCTTGGCTTCGCACGGTTCATTCCCCATACCCCCCCTGCACAACTGTAAAATTACAGAATTACGCAGAAGTCTTTTTGTAAAAAAGACTGTTATCTTGGACAAGGAGTTTTCGTAATGGATAAAGCAATATATAAAGAAAGGTTTCCGGATTTCTTTGCTGATGCGCCGGCTGTAACCCTACGCGATCCGCTGGCACAGTTTCTCGGCACAGCACGTGACGGGATCATGGAATACCGGTATGCCGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAACACCCATGCCCTGATTTCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 35245-36056 **** Predicted by CRISPRDetect 2.4 *** >NZ_QICQ01000026.1 Nitrosomonas eutropha strain Nm 57 Ga0181058_126, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 35245 36 100.0 34 .................................... CTAAATGTAGGGCTAATATGAGAACAGCAGCAGC 35315 36 100.0 36 .................................... GTCACGAGATTTGACGTACTTTTCACCTATCTCGTA 35387 36 100.0 35 .................................... AGTCCTAGTTTCTTTACTTTGTTATTTATCGCATC 35458 36 100.0 35 .................................... CACCTACAAATGCGTCATTCAAACATTCATATTTA 35529 36 100.0 32 .................................... CCAATACCATTCTGATGCCGGCGCTCATATTC 35597 36 100.0 35 .................................... ACAAGAAAAAAGAAGTGTTCAACATTAGAGATATT 35668 36 100.0 35 .................................... GTTCACATCCAAACACTAATGCATTTGGATGAGAC 35739 36 100.0 34 .................................... CGGATAGACTTCGACGAGCAAACACCTTTCCATT 35809 36 100.0 35 .................................... GTCGCTGGCCTGTATGGGGTCGATCCGGTTATTTC 35880 36 100.0 34 .................................... CGGATAGACTTCGACGAGCAAACACCTTTCCATT 35950 36 100.0 35 .................................... CTAAGGTGATTTCCTCACCCATATCATCTTCCATA 36021 36 97.2 0 ..................................T. | ========== ====== ====== ====== ==================================== ==================================== ================== 12 36 99.8 35 GAAACACCCATGCCCTGATTTCAAAGGGATTGAGAC # Left flank : TTGGTTACATACGCCATATCCTTCGCTGCTTTTTCAGTAATCTGATTAACGCGACAAGTTGGTGCCAGCTCGAACATATAAAAATTACTCCGGTAAGCAGAACGGAGTGCATTGTGTATTAGCTGCTGGCCGACAAGCTGACGGCAAGCTTGCCGGTCAGAGTACGTGTTGCCTTGATCAGAATGGAGATATACGATTTCATTTCGGTCGAAGACCGGTCACGCGAATATGGATGAAAAATGGCAATACTTTTACAAACTGAAAGGACAGAAAAAGCAGTAATATCTGCCTGTTCCCTTGGAAATTGCTGGTTGTTGGTGGCTGAAAACACTGCAGATGACAGATTGTGGCCCAGGGAAAAATAGCCACCAGCTGCCTGGTAAAATGAAGCGTTTTTGAAAGAAATTATTGTTTGGAGGAGACATCTTGCTGCATCCCGCTATTTTTCCTCTTTGCCCCGTGCAGTGGATTGATTATAAAGAGAAAAATGACAGCAATCA # Right flank : CGAGTTGGTATGTAATTTCCCTGCCATCACGAGGGACGCAGTGATGTGGTAATCCAGTGTTGTCGTTACCACTTCGCTGGATTGCTTCACCCCTTGGATGTTCGCAAAGACGGCAAAGTCAGCTCACAAGCAGCGGCTCCTTAATGGCGCACCTTGCTTGTATAGCATGCCTGCACCAGCCTGGTGCGTCCGGCACCCCAGCCACTGATGGCTGCTCCCAGACACAGAGCGGTAAATAACCAGCCGCTGGCGGCATACCCGCCAGTGAGACTGTGCAGCATGCCAATCAGCAAGGGGCCCAGTGCCGCCAGCGTATAACCAACACTCTGCGCCATACTGGATAAGTGTGTTGCGATGTGAGCGTCGGGAGAACGCAGGACGATTATGGTCAGTGCGAGTGCAAACAAGCCACCCTGCCCGATTCCTTGCAAAATGCCGAATTCCCAGACTAATTCAATTGGGCCGAACAACATTCCCAGAAAGCCGATTGCAGCAGTGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAACACCCATGCCCTGATTTCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //