Array 1 60237-59548 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXHJ01000039.1 Moraxella catarrhalis strain N6 B616ctg45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 60236 28 100.0 32 ............................ ATACATTGATGGCGATAATAACAAAGCTAAGC 60176 28 100.0 32 ............................ GACGTCTAGCTGTATTAATAGCTGCTTTCTGT 60116 28 100.0 32 ............................ TCTATATCTTGAAATTCAACCGTCATAGTAAG 60056 28 100.0 32 ............................ TGCACTTAATAAAGCGGTTGGCGGCTCTGCTA 59996 28 100.0 32 ............................ TAGAGATAGTCTTTGATTATGTTGATTCTCTT 59936 28 100.0 33 ............................ TTGGTAAAAGACAATATCATTGATACTAATTTT 59875 28 100.0 32 ............................ AAGCCATCATTGAATACCCAAAATCACCAAGG 59815 28 100.0 32 ............................ TTTTTGTTCGATTGGGGCAAATGCTTGTTAAT 59755 28 100.0 32 ............................ TCATATTGTTTGGCACATAACTGGCTTCTTAA 59695 28 100.0 32 ............................ TGTGTCGATTAAAGCAGAATTGATCAATCATC 59635 28 100.0 32 ............................ AACACCGTCCGCCAGCTTGGCGTTGATGGCTT 59575 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : | # Right flank : TTTCGTTCTACAACTACGCTGATTATTTAAAATTTTTGTACCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGTAATTTATGACCGAGCAAACCACCGAACAAACCACCATGGAAGAGATTACGACTGAGACAACAACCGAGCAAGTCGAAGCACTTCACAGCCAAATCCAAGCACTAGAAAGTGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTCCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 30821-31268 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXHJ01000015.1 Moraxella catarrhalis strain N6 B616ctg23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 30821 28 100.0 33 ............................ TACTCAAGAAATCGCTAATAAGGTTAATCCTAA 30882 28 100.0 32 ............................ TTGACTGTGCGGAATATCTGCAAGCTTTGAGT 30942 28 100.0 33 ............................ CAATTATTTTAAAGCTTCTACCAAGTCTTGTTT 31003 28 100.0 32 ............................ ATAATAACTACTGCGAACATACTATTCTCCTC 31063 28 100.0 30 ............................ AAACATACACACGCACAAAACAGGCGATAC 31121 28 100.0 32 ............................ TAAGTACCTAACTCAGTGTCTGCACCTATGGC 31181 28 100.0 32 ............................ ACTACTCTGTAGTTCGTAAGAACTCTAGAGCT 31241 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : GTGCCTGTGCCAAGTAAAATTACTGTGGTATTGGCGATGGGGATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGATATAAGATACGCCCGTCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAATGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATGATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGCAAAATAACGGATTGACCCTTTATTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATTCAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGGCTTGTTATTTCTTATTATTTTGGTTTATAATAACT # Right flank : TTGCTCAATGGTAGCGTTCACAAGCTTTCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 29-902 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXHJ01000008.1 Moraxella catarrhalis strain N6 B616ctg47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================== ================== 29 28 100.0 32 ............................ ACAAATCACAGATGATAATAGAATAAATATGA 89 28 100.0 32 ............................ GTCTTCGAATACGAAGTTTAGGTTCTTAACGT 149 28 100.0 32 ............................ TCCATCGTATTCACGGCGTTCCAACCATGTAT 209 28 100.0 31 ............................ GTAAATGACGCAAATTCCACATTTTCCCTAG 268 28 100.0 32 ............................ AATTTCTAAATTATGTAAATAAAATTTCTACG 328 28 100.0 32 ............................ GATTTTTTAATTAAGTCATTAATTTCTTGCAC 388 28 100.0 42 ............................ ATACCAACTTAAGTTTACTAAGCCTGCTTCTGCTAATGCTCT 458 28 100.0 33 ............................ TTTTAACATTTTGCTTACTCATACCAGTATCAA 519 28 100.0 32 ............................ CGAGTACCTCGAGAGCTTCCTCTCTAGAAATT 579 28 100.0 33 ............................ TGCCCAATTCATCGCAAAAGTTATTTTTGCAAT 640 28 100.0 26 ............................ CAGCTTTTCTAAAGCTTTTACCAATT 694 28 100.0 32 ............................ ACCGATTTACAGGGGCAAGTTTAAAGGTCATC 754 28 100.0 33 ............................ AGCCAACAGTCATTGACTGTCATATTGCTAGTT 815 28 100.0 32 ............................ AACCAGCCAATCTGTTGAGTAGCTTTCAATAT 875 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ========================================== ================== 15 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TAAGATAACGGTACCGAATAAGTATTGCC # Right flank : ACAATCGAGCAAAAAGCTAAATATTCAATTCTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1170-5 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXHJ01000020.1 Moraxella catarrhalis strain N6 B616ctg48, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1169 28 100.0 30 ............................ TTTTAGTCAAAGCGAAAAGAATTACAGCTA 1111 28 100.0 32 ............................ ACTTTACCTCTACGCTTTTCTGCACCAATATG 1051 28 100.0 32 ............................ TTTTCACCGAACAAGTTAGGGAAGTAACTTCC 991 28 100.0 31 ............................ TAAAAAGCCCTAAAATTGAAGTGTAGACAAC 932 28 100.0 32 ............................ AGTGACGGCATTAAATTGAGCAACGCTCATGT 872 28 100.0 30 ............................ AAACCCTGTGATGATTGGCGTTGAGCAAAT 814 28 100.0 32 ............................ TGCTTCTCTTACGATTAACATGATGATACCTC 754 28 100.0 34 ............................ GATAGTTCAGCATCAATTTGTTCAAAAGTATTAT 692 28 100.0 32 ............................ AATGCTTAAAAAACCTGTTCAAATTTCAAACC 632 28 100.0 32 ............................ TTGGCATAGGTGAGCATGGCGGTTTTATATCG 572 28 100.0 32 ............................ ACATAGCTATAGCCCACAGTATTTTGTAGTTG 512 28 100.0 32 ............................ TACTAGCTCGCCAAGGCTGTTAAATAATTCAT 452 28 100.0 32 ............................ TATAACTTATTTACCTCGTCATCAATTTTGTA 392 28 100.0 32 ............................ AATAACTACAACTTCTGCTAATTCGTACATGT 332 28 100.0 32 ............................ GTTATTTAACTCTAGCTATATTATATGATTAT 272 28 100.0 32 ............................ CTTACTATTCCTCATTACTTTGGCGATAATTT 212 28 100.0 32 ............................ ATTATTCAGTGTTTCGCTAATGCGGTAAGTTG 152 28 100.0 32 ............................ TTGGATATACCAATATTGCTCAAAAATATCGC 92 28 100.0 32 ............................ GATAAACTGACATTGATTTAAATCACTCATAA 32 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 20 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TCATAAATAAATGGCTCACTTGGCGGA # Right flank : ATATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //