Array 1 347676-346591 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019303.1 Prevotella intermedia strain 17 chromosome II, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 347675 36 100.0 29 .................................... TAGCGTTTGCGTCTACGTTTTCCATAGCC 347610 36 100.0 29 .................................... ACATCAACTACAAAGCGATAATCTAATAA 347545 36 100.0 30 .................................... TTCTTAATAGTTCTATTCTTGCTCCTGTAT 347479 36 97.2 30 ....T............................... AATTCTTGATATAGTTCTATTATAGTATCT 347413 36 97.2 30 ....T............................... ACCTTAAGGTCCTTTACGCTCTTAGCACCA 347347 36 97.2 30 ....T............................... ACTCTGGCAAGAACAAGTTCGTAACCATAC 347281 36 97.2 30 ....T............................... CAAGAGTACGTTAGCAATGAAAGTAGTAAG 347215 36 97.2 30 ....T............................... ATTACATGTGGTTAACTCATCTAAGAACAA 347149 36 97.2 28 ....T............................... TTATTTGTTTTGTGGCACAATTGACCTA 347085 36 100.0 29 .................................... TTGTTGGCAATGAGCTCGTTCACTTTACC 347020 36 100.0 30 .................................... GATTTTAATTTTTCCTCAATATTTGTTTCT 346954 36 100.0 30 .................................... TCACTCCAATCTTTAACAGTGTGATAATAA 346888 36 100.0 29 .................................... TCCTTAACAATACGTGAAAGTAGATAAAA 346823 36 100.0 29 .................................... CCTATGGTAATGTACTCTTTTAGAACACA 346758 36 100.0 30 .................................... TCAGCGAGAATTTTAGCTTCAAACTCAGCT 346692 36 97.2 30 ................................T... AGCATTCCAATAGCGGAAGGACTGATTTTT 346626 36 94.4 0 ..........................C.C....... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 98.5 30 GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Left flank : TTGAGAATATTGAGCGTGCAAAGTATGAAGCCATACTGAAGGCGCACCAAAGCATTTATAAATTGCTTAGGTTTATTACAGATACGGAAAACGACGACTGCATATTGGTGTGGGAGCAGCCTAAGGGCGGCGGAGAGAAAACTTATTACTTCAGACAAGCCAATATACGTAAGTTTATAAAAGAGCTAACCGAAGAAATATACAACAAGGGCAATGGCATATTTCTATCAAAAAAGGTAATGCCACTGATATTCGAATATAGAAGTCTTGTCTATGGACTGCTGCTTACTGCGAAGGACAAGCCCGACGAGACGATAGAAATAAAGAATGAGAAGCTTGCAAAGAGAATGATAGAAATTCATCAGAGCCTCTCAATACAAATCAGAAAAGATATAAATTTAAAACAACGAGATTTACAATTAGATAATAAGAAGGGGAAAAAATGGTGTTGGAAAAGAAAGAAACAAAACATATAAGAATCAGACAGTTAGGTTAGGTGC # Right flank : TTATTAACAAGCAAGGGAATGGAATTGGGGGAAGTAAAAACGGAAGGGGGAACACGCCTTTCTATGGGTGAAAAAAGGCGAGAAAGGTGTAAATATTTTTCACAAGCGAAACTATTGCGTAACTATCTCGTTATCAGCGCATTGTAAAACCTATTGTTTTGCAATGCGAAAGCGTAGGTTTTACACGGTAAAAGCGGCTCTTTTGCGTTGCAAAAGAGCCGCTTTTGGAATGTAAAATCGAAATTATGGTTTTTCTATGGAATTATCTTTACAAAACAGGAGTGGTTTTACGTCGTGGAAGGTGTAGAGGTTGTGGCGTGGGTTTGGACGGCAGCACAATGGCGGCTTTGCCGATAGTGCGACATTGGAAAGGGTGGTTGGGGCTTCTGCATCGGCTCGATGCGGTGGCTCGTTCGGTTCTGTTGGTTTCGGTTGATGTGCAGCGACGACAGGAAAGCCGCTGTACAGAGCAAGATAAGATGCTTTCTCATATCGTTATC # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Alternate repeat : GTTGTATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 2111197-2114160 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019302.1 Prevotella intermedia strain 17 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 2111197 47 100.0 29 ............................................... ATAAAATTTAAAATTATGCAAACTTTTTT 2111273 47 100.0 29 ............................................... GGACAACTTCAAAAAGTTATCTTTCAGCG 2111349 47 100.0 30 ............................................... CGCCCTATCGTCATTTCAATGCCACCGAGT 2111426 47 100.0 29 ............................................... CAAAAGCGGTCGTAAGGGCTTTTATCCCG 2111502 47 100.0 29 ............................................... TGGTGCAACCAAGTGGAGCGTATATTGTA 2111578 47 100.0 30 ............................................... TATCAAATACAGGCGCATACTCCTTGTACA 2111655 47 100.0 30 ............................................... TTTCTTCAAATAATTTCCTGTGCCTACGTT 2111732 47 100.0 29 ............................................... TTTTTCGTTTCGTTCACACGTTGATATTC 2111808 47 100.0 30 ............................................... CCTGCTCTACTTGTTGTATAGTTTCGTTCT 2111885 47 100.0 30 ............................................... AGGAAAGAATAAACAGTGCTTGGAAATAAT 2111962 47 100.0 30 ............................................... CGCCTCAACATTGCCAATATCCTCTCTCTA 2112039 47 100.0 30 ............................................... CTTAGGTATGTTAGTTAGTGGTGCTGTTGG 2112116 47 100.0 29 ............................................... GGCTATGCGCTCGATGCATATAATACTAA 2112192 47 100.0 30 ............................................... CACAGACACATCAATAATAGTAACTTTCTC 2112269 47 100.0 30 ............................................... GCGGGTGCAGCACTTGCCTACTTATACACA 2112346 47 100.0 30 ............................................... TTGAAAATTATTGACATTAAAGGAAAGGGC 2112423 47 100.0 30 ............................................... ATTTAATCTAAAAACTTTCATATTTATTTA 2112500 47 100.0 30 ............................................... CACGTGTAACGATAGCACAGTTTCCGTCCT 2112577 47 100.0 30 ............................................... CTGCCACCGTAACAACGTTTGAGCCATTAA 2112654 47 100.0 30 ............................................... AATAAACTGTAATACTTCTTTTAGGTCTAC 2112731 47 100.0 30 ............................................... TATACGACCAAATATTGAAGCAGAACCTTA 2112808 47 100.0 30 ............................................... TGACGCTATGGGTTACGAACTTACCCCAAT 2112885 47 100.0 30 ............................................... GGAAAGATGTTGTTGTATTGCTTGCTGCAG 2112962 47 100.0 30 ............................................... CAACAACGTTAAAAAGTGGCAACCCATTTA 2113039 47 100.0 30 ............................................... GCCCGTCAAATACTCGGCTTAGCTTATCAA 2113116 47 100.0 30 ............................................... CCACTCGAAAAAGGTAGTATCGGACGAAGA 2113193 47 100.0 30 ............................................... AAGCTCAAAGCCTTTACAATGCTGCTATTA 2113270 47 100.0 30 ............................................... AGGGGATTTAATAATGACATACCACTAGGT 2113347 47 100.0 29 ............................................... CGATTGTTTTCTCGTCGCCTTTCACGAGT 2113423 47 100.0 30 ............................................... GGAAACATAAAACCTAAATTCATATCCTTT 2113500 47 100.0 30 ............................................... TGTCAGCCTTTCCGTATTTGTCCTTTGGCA 2113577 47 100.0 30 ............................................... TTCTATTTGGTCTGATAATTTAAATTATGG 2113654 47 100.0 30 ............................................... GGTTATTCTCTCGACCCTAATTGTCAGAAT 2113731 47 100.0 30 ............................................... ATGCCGAAGATGTAAGTAATGGTAGTGCCA 2113808 47 100.0 30 ............................................... TAAAAATTTATATTGAAAAGATATGATAAA 2113885 47 100.0 30 ............................................... AAACAGTCTTTGAAAATCTTGTGAAAATGC 2113962 47 100.0 29 ............................................... GACTATGGTATCTTCGTTATCGTCTACTT 2114038 47 97.9 30 .........A..................................... AACCTCCGAGCACATTACGAAATGCCTACT 2114115 46 91.5 0 .........A...............C....C......-......... | ========== ====== ====== ====== =============================================== ============================== ================== 39 47 99.7 30 GTTGTATTTGCCAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Left flank : AGCAAAGAAGAATGGTTTATCCTGAATTATAAAGCCTATTAGTGAAAGCTTATAGATTTAGTCAATATAGAAGTATGTGGTTAATGGTATTTTTTGATTTACCCACAGATACAAAGAAAGAACGAAAAGCAGCTTCACTCTTTCGTCAAAACTTGCTGAAAGATGGATTTACAATGTTTCAGTTCTCCATTTATATACGCCACTGTGGTAGTAAAGAAAATATGGAAGTACACATTAAAAGAGTTTCCACCTTTATTCCAGCATACGGAAAAGTTGGAATAATGGGCATTACAGACAAACAATTTGAAGAAATAAAGCTATTCTATGGCAAGAAACCACAAAAACCAAATGCACCAGGAGCACAGTTAGAACTCTTTTAATCCTCCTTTTAGAAACAATAAAGTTCCATTCTTGACGAGTGGAACTTTATTTTGCTTGCATTTTTCTTTCTCTCTAAGCTTTCGTAACAATACTGATGTTCATTACTTTAATCTACTTGA # Right flank : CTAACGACACTTCCGATTTATTGTTCTAAAATCAAGTAAATGGGGCAATAAATTTAACACAAGCGAAAAGGGGAAAATAGAGAAAAAGAGAGCTGGAAAATAGGGGTGGAAAAGTAAAAGAGCCGCTTTTGCAATGCAAAACAATAGGTTTTACCGTGCAAAAGCGGCTCTTTTGGATTGCAAGAACGGCTCTTTTGCAGAGCGAAAAGATGATGACGGAGCGCAAAATATAGCCTATATACGAATAAAAGTGTTCGTTTTACAACGTAAAAGGTATAATTTCATTGCACAACACTACCCTATAAGCTTGCAAGAAGCTATGAACAAAGCACTTATGGTAGCACGTAAATAATGGCGTTATTTGCAAATAAATAATTTAAAGTGCAGAAAAGTACCCGTAATTCCGAAGTTGAGGCTCTGAATTTTAACAATCCCGGAGTCGTTTTAACAAATATTCAAACTTTAAGGAATAAAGGTATGCAACCACTGAAAATAAAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTATTTGCCAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //