Array 1 23277-23510 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV810610.1 Streptococcus sp. HMSC072D03 Scaffold1005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 23277 36 100.0 30 .................................... GCAATGCCACTGAAGCAATGACTGCTCTTG 23343 36 100.0 30 .................................... CTAAACCGACACCAGAAAAACCAGTGACAC 23409 36 100.0 30 .................................... AGACAAAACAAGAAGTATCACGTTCGATTC 23475 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATGTATGACAGGGTAAAGAAACATTATCCAAGTAATAATTTCCCACCGAGAGAGGGTTTTAGGAAATCCTTAGAGAATGTGACGCCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCACACTTGTTGATTCTGTAATTTTGAATATCCTAAATCAGCTGTTTCAATTTAATTACCGTATAAGATATTCACAAACTCCTGATGAGGAGCTATTGCATAGATATTTAGAAAGTAAGAATTGACAAGGACAGTTATTGATTCTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAGGTTTTTGTACTCTCAAGATTTAAGTAACTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTACTCTCAAGATTTAAGTAACTGTACAACGTAAAGGTGTAGGCAAAGCAATGTCACTCT # Right flank : CCGTTGACCATTTAGATACTCAAATGACTTAGTTTTTGTACTCTCAAGATTTAAGTAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTCAAGATTTAAGTAACTGTACAACCTAAAGTCGCTATGGGTATTACGGCAGTGGGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACCCAAAGGGCGAAAATCCTAACCGAACCGTATGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACTTGTCATTATTCTCCTTTTCTTCTGAGTTAGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACTGAGTCATATAAATCCTCAGCGTGGGCTATGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACCTATTTGCGGAAGTAGATAAAACCGCAACTGTTTTTGTACTCTCAAGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 23727-24290 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV810610.1 Streptococcus sp. HMSC072D03 Scaffold1005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 23727 36 100.0 31 .................................... CCAAAGGGCGAAAATCCTAACCGAACCGTAT 23794 36 100.0 30 .................................... TTGTCATTATTCTCCTTTTCTTCTGAGTTA 23860 36 100.0 30 .................................... TGAGTCATATAAATCCTCAGCGTGGGCTAT 23926 36 100.0 30 .................................... CTATTTGCGGAAGTAGATAAAACCGCAACT 23992 36 100.0 30 .................................... AGATTTGTTCTAATTGCGGTATGGAAGGAA 24058 36 100.0 30 .................................... TGGTTCCTTTGTTTTCTGGGATGTATCTGT 24124 36 100.0 29 .................................... AAATTGGAATAAATTAAGCGAAAATTTTT 24189 36 100.0 30 .................................... AAAAAGAGGAATATGAGAAACTCATTCGCA 24255 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GATTTAAGTAACTGTACAACGTAAAGGTGTAGGCAAAGCAATGTCACTCTGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACGCAATGCCACTGAAGCAATGACTGCTCTTGGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACCTAAACCGACACCAGAAAAACCAGTGACACGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACAGACAAAACAAGAAGTATCACGTTCGATTCGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACCGTTGACCATTTAGATACTCAAATGACTTAGTTTTTGTACTCTCAAGATTTAAGTAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTCAAGATTTAAGTAACTGTACAACCTAAAGTCGCTATGGGTATTACGGCAGTGG # Right flank : CTATGGTCCATTCGGCTATATACGGAAATCAGTTTTTGTACTCTCAAGATTTAAGTAACTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTACTCTCAAGATTTAAGTAACTGTACAACCGGACTTACGCTTGTCAGGCCACCGTCCACGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACTGAGCAGTTTTGGACGGAAAGCACAACCCCTTTTTTGTACTTTAAGATTTAAGTGACTGTACAGTTTGATTAATTCAACTAAAAAAGCCAGTTCAACTGAACTTGGCTTTTTAAAATACACGATATACATAAGGGTTGTCAGGCTGTCCGACCTCTTTGACCTCAGTCAAATTAAGGATAGGAAGGCTCTGTTTGAGATTTTGATAGTAATCCACAGTGATGGTACCAGTGACTTTTACCCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 2649-3146 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV810696.1 Streptococcus sp. HMSC072D03 Scaffold759, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2649 36 88.9 30 NNNN................................ GGAGAGCTCACGCCCTCTTGCTAGCAGTAA 2715 36 100.0 30 .................................... ATTAATTGCTTTATCCAAGAAAGGGTTGGC 2781 36 100.0 30 .................................... AATCTTCATGTATGACAAATCATTTATTGA 2847 36 100.0 30 .................................... AGATGACTTTGTACGCTAACACAGGAAGAA 2913 36 100.0 30 .................................... TGGACGAAAAATTTTTCCTATCGGAGGAAA 2979 36 100.0 30 .................................... CGATGCTAACGGTGGTCTAGTCCACAAGAA 3045 36 100.0 30 .................................... CGCCATTAACCTCTGCTGCTTTAAAACCTT 3111 36 88.9 0 ................................NNNN | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 97.2 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : TCAACAATTTATTTTGGATAAGGATTACATTTTGATGCCTTACAATAACTAGTAATTTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTACATGAAGTTGAGTGGAAGAATCATTTTGTTAGAGAGTAGGTTATAAGCTATCTGATAGGTGAGAAGGTAAGTTGATTGGAAAAAGATTTCTAAAATTTTTTCGATATAGCGACAGCTCTATTTGTTAAAACGTTGTTATATAAGGCTTTTTAAGGTATAATAAACATAAAAATGAAATCATTTTGAAGCTGAAGTCAGGCTGAGATGAATAGCGCGATTACGAAATCTGGTAGAGAAAAATGACCTACGAGGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTGTGTTGTTTCGAATGGTTCCAAAACAATGAGAATCTAACACTGTGTGATAATGTAGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACAATCTTCATGTATGACAAATCATTTATTGAGTTTTAGAGCTGTGTTGTTTAGAATGGTTCCAAAACCATGACAGACTTTGTAGCACGAAATCACACGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACAATCTTCATGTATGACAAATCATTTATTGAGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACCATGACAGACTTTGTAGCACGAAATCACACGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACTGAACTAATTAAGACGATTGGAGAACACAAGTTTTAGAGCTGCC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 3302-3667 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV810696.1 Streptococcus sp. HMSC072D03 Scaffold759, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3302 36 100.0 30 .................................... AATCTTCATGTATGACAAATCATTTATTGA 3368 36 97.2 30 ....................A............... CATGACAGACTTTGTAGCACGAAATCACAC 3434 36 100.0 30 .................................... AATCTTCATGTATGACAAATCATTTATTGA 3500 36 100.0 30 .................................... CATGACAGACTTTGTAGCACGAAATCACAC 3566 36 100.0 30 .................................... TGAACTAATTAAGACGATTGGAGAACACAA 3632 36 80.6 0 ............CC...............T..CTCT | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 96.3 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : GAATGGTTCCAAAACAATCTTCATGTATGACAAATCATTTATTGAGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACAGATGACTTTGTACGCTAACACAGGAAGAAGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACTGGACGAAAAATTTTTCCTATCGGAGGAAAGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACCGATGCTAACGGTGGTCTAGTCCACAAGAAGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACCGCCATTAACCTCTGCTGCTTTAAAACCTTGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTGTGTTGTTTCGAATGGTTCCAAAACAATGAGAATCTAACACTGTGTGATAATGTA # Right flank : TCTCTTTGTAATAATTTTTGGTTGACTTATCCTCAAACACATCCTATCATAGAGGAGTCTAGTATTGAAATGGGGGAAGAGACATGTTATACGAATATCCAGCGATTTTTCACACGATTGAGGAAGGTTATCAAATTAGTTTTCCTGACTTTGGTCGTAGCATTAGGGCAGATTCTTTGCCTCTTGCCATGACGAAAGCATCTGTGTTTTTATCACATATTATAAAGGGCTATGGAGATAAGGATTTACCTGTGCCGACTGCGGTAAGTAGTATTCCTAATGAGGAAGAACTCGTCGTTTTGATTCAAACAGAGCTTGATTAAGACTAAAAAACTCTCGGAAGATTAATTCCCGAGAGTTTTAGGTTTTATTGGCCACATAGACGCCCAGGACGACTAAAATGCCTGCAAAAATTTGTAGCTGCGAGAAGGGTTCTCCTAAGACGACAACAGCAGCTAGAATTGAGATAATGGTCGAAATCCCAATAAAGGATGCTGTTC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 91682-91840 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV810616.1 Streptococcus sp. HMSC072D03 Scaffold1133, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================= ================== 91682 27 100.0 39 ........................... CTTGTACTTTAAAGGTTAACCTTCCTCTAAGTTTTAGTG 91748 27 96.3 39 ................G.......... TAAATTTAATTAAAAAGAGCTAATACTTTAGTTTTAGTA 91814 27 96.3 0 .................A......... | ========== ====== ====== ====== =========================== ======================================= ================== 3 27 97.5 40 CCATGTCAAATAGAACAGTAACAAAAC # Left flank : CTACCCAAACTCAAAACAAAAAAAGCATAACAAAGAAGCCGGCAAGCCTTGTCTCAAAAAACAAGGATGCGCGTGCCTATGGCAAACCATAGGAAAAACTTCTCGTTATGCTTAATTGCTAATAACGTTTGTTGTAGCCTTTCAATCAATTAGGCAAATATCTCGTACCTGTTTCAAAGCGTCAAACCTCTTCTTCTGTCTGATGGCTTAACTGATAGCTAAAAGCGAGTACGCTCCCTTTTAACCCATTATAAAACATGGTATGCCTATTGCTGGGACAGAACCAGTAATGACATCTCCTCCTCCATGTTTCCTCTTTTCTTTAGTCACGTGACCAAAGGTTCACCGTTTGAGGTGGTGAAAAAAAAGATATAAATTAAACAATTTATGTCTTTAGTATAGCAAACACATGAAAAAATAGCAACCTAAGAATAAAAGTGACTTACCGTAAAATAAAAAAACACCTAAAAGGTGCATGATATACAGTTTATGTTTTAGTT # Right flank : CCTCGACATGGACCAGCTCCCGACCTTCTTGCCTTGGCTTCCGGTTAGGCTATCTGGTATTTACAAGGTTATTCATAATTACCTTGAAGGTTCCTAAATAAACCCTTTTAGTTATTATAACATATTTATCGTTTGAGGTAAGGAATCAAGCAAATAACCCTATATCACTTTTTCTTATGTTTAATCTTGTTCAGTTTAAGGTCTTTGAAAGAAAGTTTATTCTCTAAAATAGCCACAAATTCATATGGAGCATTAAACATAATTTCAAAGCCTTTTTGTTTACGCTGGTCAAACCAAGACATCTCTTCTGGGTTATAATCCTTACGGGATTGCAAGGATTTGAAGTCCTCTTGATAAAGAGTAAAGGTATCACCCAACATCAAGATCTGATTAGCAATCCGTCCAAAACGGTTCTTTCGTGCTTTTTTTACCTTATGCCAGATATAATGTTTTTGGTCTAGAAGTTTCTTATAGGCTGAGTCCTGCACCCATGCTCTCTT # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCATGTCAAATAGAACAGTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //