Array 1 55610-54133 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABAO01000021.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701 gcontig_1104776741920, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 55609 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 55548 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 55486 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 55425 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 55364 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 55303 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 55242 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 55181 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 55120 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 55059 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 54998 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 54937 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 54876 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 54814 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 54711 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 54650 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 54589 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 54528 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 54467 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 54406 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 54345 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 54284 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 54223 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 54162 29 96.6 0 A............................ | A [54135] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 73357-71742 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABAO01000021.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701 gcontig_1104776741920, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 73356 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 73295 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 73234 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 73173 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 73112 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 73051 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 72990 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 72929 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 72868 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 72807 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 72746 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 72685 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 72624 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 72563 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 72502 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 72441 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 72380 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 72319 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 72257 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 72196 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 72135 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 72074 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 72013 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 71952 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 71891 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 71830 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 71769 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //