Array 1 289086-292083 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCUI01000005.1 Salmonella enterica subsp. enterica serovar Senftenberg strain HIY0213 NODE_5_length_419382_cov_35.894134, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 289086 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 289147 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 289208 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 289269 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 289330 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 289391 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 289452 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 289513 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 289574 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 289635 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 289696 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 289757 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 289818 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 289879 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 289940 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 290001 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 290062 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 290123 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 290184 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 290245 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 290306 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 290409 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 290470 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 290531 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 290592 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 290653 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 290714 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 290775 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 290836 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 290897 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 290958 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 291019 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 291080 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 291141 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 291202 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 291263 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 291324 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 291385 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 291446 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 291507 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 291568 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 291629 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 291690 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 291751 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 291812 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 291873 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 291934 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 291995 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 292056 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ========================================================================== ================== 49 29 99.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 308629-311099 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCUI01000005.1 Salmonella enterica subsp. enterica serovar Senftenberg strain HIY0213 NODE_5_length_419382_cov_35.894134, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 308629 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 308690 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 308751 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 308812 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 308873 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 308934 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 308995 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 309056 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 309117 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 309178 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 309239 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 309300 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 309361 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 309422 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 309483 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 309544 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 309605 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 309666 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 309727 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 309788 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 309849 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 309910 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 309971 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 310032 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 310093 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 310154 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 310215 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 310277 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 310338 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 310399 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 310460 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 310521 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 310582 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 310643 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 310704 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 310765 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 310826 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 310887 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 310948 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 311009 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 311070 29 100.0 0 ............................. | A [311097] ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //