Array 1 16910-16212 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOZT01000073.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000183 SEEB0183_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16909 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 16848 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 16787 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 16726 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 16665 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 16604 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 16543 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 16482 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 16421 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 16360 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 16299 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 16239 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3-1192 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOZT01000007.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000183 SEEB0183_2000003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3 29 100.0 32 ............................. ACCCGCTCCGCGCAGCTCGCAGCGTAATTCGA 64 29 100.0 32 ............................. ACACATATACTCTCCCCGTTTGCATCATCAGG 125 29 100.0 32 ............................. ATCGCTAAATCTAAAATGCCCTCGTACAGTGA 186 29 100.0 32 ............................. CGCAATAAACGGCATCAGCTATAGCTTGATAG 247 29 100.0 32 ............................. AAACTGCGTTTGAGTTCCAGCCGCTTTTTCCT 308 29 100.0 32 ............................. GCCGACGACAAAATCACGGTCACAACGGGTAT 369 29 100.0 32 ............................. GATTCGACTTTATAGGGATTGATTAGAGGAGA 430 29 100.0 32 ............................. TTATCTATGCCATAGTGACCCCACGTTACATA 491 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 552 29 100.0 32 ............................. ATTGTTTCCCGCTTGCGCTTGCATCGCCGGAT 613 29 100.0 32 ............................. CTTACTATCAGCTCGCGTGCTGTTTGCAGGCC 674 29 100.0 32 ............................. GATGCCAAACTGGTCAAGCTGGCGATTATCAA 735 29 100.0 32 ............................. ACCATTACTGACGTGATGGCGGCGCAAGGGTT 796 29 100.0 32 ............................. GGAAATAAACTCCTTGAGCAGCGGCAAGCAAC 857 29 100.0 33 ............................. TGTGAACGTCGGATAAATACCGATTCCGCCTGC 919 29 100.0 32 ............................. AGTTTCTTGTGACGCTTCTATTCAGGACAAAA 980 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 1041 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 1102 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 1163 29 96.6 0 ...............A............. | A [1190] ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAG # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //