Array 1 20963-21418 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJZP01000004.1 Serratia rubidaea strain CIP 103234 contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20963 29 100.0 32 ............................. GTCGTACCCGGATTATCATCTGCAACAAAAAA 21024 29 100.0 32 ............................. GCCGTAACAATAGCCGGAGGACAACGAAATCT 21085 29 100.0 32 ............................. TCACCGGTACTCACATCTTAATCTAAGGACCA 21146 29 96.6 32 ............................A GCCAGCGCAGTATCGCCGCCATAATAGAAATC 21207 29 100.0 32 ............................. GGTGTATTTCAGGCCTGGCGCGCCTGCGAAGA 21268 29 100.0 32 ............................. CAGGTCCCTGTGATGGGTGAAGACGGTCTGCA 21329 29 100.0 32 ............................. GACATGATTACCGCTGCGTTTATCCAGCAGTA 21390 29 82.8 0 ..........T.T..A.......T....A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.4 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GTGGAGATGATTTACCTGACGCTGGCGTTTATCACCACGCCGATTTTCTACCTTTCCGGCACCATCTGGCCGCTGCAGGCGATGCCGGGCTGGGTGCGCGCCATTTCATACTGCATTCCTTCCACCTGGGCCACCAAAGCGATCGCCGGGGTGAACCAGATGGGGATGTCGCTGAATGAAGTGGGGAACGACGTGCTGATGTTGCTGCTGCTTGGCGCGGTGTATACCGTGATCGGTATCGGAGTGGGGCTGGCGCATAACAGTGTGGCGCTGCGCAGTCTGTTCCGGAAACGGCGGGCGTAGTGTTGCGGGATAAAGCCTGTTCGGTAAGGTGCGGCAGAAGGTGAGTGATGATCTGCTTGGTACAGCGGCTATTCTGATGGCGAAGTGAAAATAAATTAATTGTTTTTCAATTGGTTATATTTTTCAGATTATCGTGAAAAGTCGGTGGCTTTTTTAAGTGGTAAAAAATCAATATAATTCAATTGGATATATTTAGT # Right flank : AGCAGTTACCGCACCAGTTCCAGCCCGGCGACGCGCCGCCAGTAACCGTTGCAGTCGCTGTCGTTGGTCAGCGCCAGCGGCTGCCCGGCATTTTCGTTGGCGCGGAACTGCTCGAGCATCGCCAGCGTTTCCATGCCCTGCGGCGACAGCCGCACGATATCGACCAGCTCCTGCATACCGCTTAGCTCATTACCCAGGTTGTAGCAGTAGCCGCTCATCGTCTGGATGCCGTTGAGCACGAATACCTGCTGGTTTTCCTGTGAGCGCATGGCGCGCCCCTGCGGGTATTTGATGCAGCAGGTTTCGCACTCATCCTTGCCGCGGTTTTCCGAGCGTGCGGTAAAGCAGCGGGCGGAGTAGGCCAGCGGCAGGTGGCCGTAGCCCAGCACCTCTACCTCAAAGCCGCGGCGGAAGCCCAGCTCGGCGCACTGCTCCAGCACCTTGCCCAGCCAGTCGCGGGACAGTTCCACCGGCATGCACCAGCGCGTCATGCCCTGCTT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8952-9279 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJZP01000064.1 Serratia rubidaea strain CIP 103234 contig_69, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 8952 28 100.0 32 ............................ GTTTGCGACAAACCGGTGTCACCGGAGAAATG 9012 28 100.0 32 ............................ AACATGTCGAACATCCTCACCGGCAAAAACGA 9072 28 100.0 32 ............................ ATCGGCTAAATCTTTCCGATGCGGATAAATCG 9132 28 100.0 32 ............................ ACCACGCTTCAGCCGATCAGGCCACTTTGATG 9192 28 100.0 32 ............................ TTTTTTTGTCAGCATCAGAAACAGCGCTTTAC 9252 28 96.4 0 ....................T....... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATTCGGGAAGGTTTGCTGCACTTCGGTGCGCACCACTTTATCTGCGCCACCGCACACTGCTGCGGCATCAATGGTTTTCTTCTGGCCAATGCCGGAGACAAAGAAGTGGTGTGTGGTGGTCTGCTTAGGCGCGGCGACCGTTTGGTTTTTCATCGTGAACGTCTGCTGTGCACAGCCGGTAACCGTCATGGCGAGTACTACGGCGGCGAGTAATTTTTTCATTATTTTCAATTCCTTTTTAATCAATCAATATAAAGCGCGGGGATAATGCCACGATTACAGAAATTTACAAGTGTGGGTGACAATAAATAGCGTGCTAAGCGAGGAGGCTCGCGCGACAGAGAGCGGCAACGTAGGGTTGCGCCAACAACCCTTTTTTTAGCACTATGCGTAACTTATTGATATCTAATGGGCGTCTGAGCAGGCGTAAAAAAAGGGTATCGGCGGCTGAAAAGGGGAAAAAGCTTTAATTATTAAGCCGCTGGCCTTAAACTCTAACA # Right flank : AAAAACACTATATTTTCGTGACCATCTTTATATTCGCGACCTTATTGATGGTATAGGGTATTTTTATTGAAAATATTAGGTTTTTATGGAGTTAGGATGAAATATGGAAATGTTAAATAGACTATCCGCTATTCTAAGTTTACCGTTAACCCTGCTGTGCGTGTCGTTCTCATCACTGAAGATTATGGGAGCAAACAACTCACTGATGGATGTTTTCCTGTCGGTGATTGTTCTGCTGGGCTTTCTTAATTTATTTCGGCTGATGGGGCGGTGTATCGTTTGGTTTAACGGAAACGATAAACGGTCAGATTAAATAAATCGCGCCTTTGACCATTCCGGCAAGCCGCATAAACAACGGGAACCCTGGGGTTCCCGTCGTCGATTAACCATCATGCCGCAAAAGCGTCAGCGCCCGCTCACGGCGGCCGGGCTGTCCGCCGTGGCCAGCGTATCCTCCAATACTTCAAACAGGCGGTCGATCTCCTCGCGGGTGTTGTAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 12750-12898 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJZP01000051.1 Serratia rubidaea strain CIP 103234 contig_56, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12750 28 100.0 32 ............................ GGTAAAAATCATCTAGCCTTGGCTATCGCCAA 12810 28 100.0 33 ............................ CTGAAATACTCGACGAATTAACACGGCGATTTG 12871 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 38 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATTGAATTTTATGTGATCTCTGTTGGTTACTGTCCCCAGGGCTGCTCGCTGACATACTGCAGGAAGCTCATCATACCCAGGCAAACCAGTACGCCAACCATTACTATTATCACTAATCTCATAATGTTACCTTCCAGTCGTTTGGTTATCTGTTTCGTTATTCGCACGCCGGCAGGCGTGTGAGTAAAGCAACTTATCTGCCTTACGAATTATTGGCGACCCAGTATAACCAGAACTGGCCAAGGTTGGGAGTCAGGCGGCTAAAGGGTGGGAGCGAGGGCGTAACAGCGGGGCAGATATTTACTATCGGCATAATGGCATCGGGCTAGCCAGGTCGTCGGCTGGTTGCTTTATGATCCGGACTATGCAAACCCTTTTTTTTACGATGTTTCTAAGTTATTGATATATATTGGTTGAATTGAATGCGAGAAAAAGAGCCTTTTCGGGCGTAATCGGCAGGAGTGCTTTTAAAAACAATAGGCTAGTGCTAATCTGCAACA # Right flank : AGACAGCAGGGAGCAACGACAGAACGCCGGATGGTTCAGCCGCACAGGCAGCTCCGTCCCCTTGCTGTGATTCTTATGCCTCAACGCGATGACAAACCATTTCGATATTGTGGCCGTCCGGCGCAATCACAAAGGCAGCGTAGTAACTGGCGTGATAATTGGGACGCAGGCCTGGTCCGCCGTTATCTTTACCGCCGGCCGCCAGCGCTGCCCGGTAGAAATCATCCACCTGCCGGCGGCTGTCGGCGATGAACGCCAGATGCAGCTGCGCCGGCTGCGCCGTGGTCTGGTACAGGCACAGTGAGGTATTGTCGGGGGCGGCGATCTCTATCCCATAGTCCGGCGCGCCTTCATCCACCACGCTCACGCCCAGCGGCGCTAGTGCCTTAAGAAAGAAATTTTTGCTGGCCTCATAGTCGCTAACGCCAAATTTTACGTGGTCAAACATAGCTTCCCCTTACCCGTGATGAGCCGTGCGCTCACTCCAGTATAGCCGTGCG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 8413-7461 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJZP01000011.1 Serratia rubidaea strain CIP 103234 contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 8412 32 100.0 34 ................................ TCGCTGCTCGTTGCTCTTACGCTTAGCCATGCTC 8346 32 100.0 33 ................................ ATCTACATCACCGGGCGCAATGTGGCCGGCGGC 8281 32 100.0 34 ................................ CCATAACTCACACCACAAATTTACTGTATTTATA 8215 32 100.0 33 ................................ TCATCACTGACGCAGGCCATTGTGAAAAATCTT 8150 32 100.0 34 ................................ GTGAATATCAGCGGGTTCAGCATGCGCAGGCCGT 8084 32 100.0 33 ................................ TTCTCAATACGAGCTTTGCGGTTATCGTATGGG 8019 32 100.0 35 ................................ ATGGCTAATCAGGACCAGTCCGAGGAACAGCTAGC 7952 32 100.0 34 ................................ TTGATCATTTCGATAGTGTTCATTGTCCTTCCTC 7886 32 100.0 33 ................................ TGTATTTTCATGAGCAAAACAAACTGGCGCGTC 7821 32 100.0 33 ................................ AAGAACCTGATGAGTGACGTTATCCAGGGCGCC 7756 32 96.9 33 ......T......................... TCACTTATCGGTTGATCCCTCTCGGGGCCGGGT 7691 32 93.8 34 ...........C.....T.............. AGCACGTTTGTTTTGCCGCTGGCGCCGTACGCCT 7625 32 93.8 34 ...........C.T.................. ACCAACGACTGCTACGCGCTGGCATTGTATACCT 7559 32 93.8 35 ...........C.T.................. ATCATGAAATGTGTCGCGAAAGTGTGCCTGAGAAC 7492 32 90.6 0 ...........C.T.................T | ========== ====== ====== ====== ================================ =================================== ================== 15 32 97.9 34 GTCGTGCCTCATGCAGGCACGTGGATTGAAAC # Left flank : CATATCGTTGAAAGGTTCTCGGAATGATGGTTTTGGTGACCTATGATGTTTCTTTGGCTGATGCTGATGGCCCGCGTCGACTCCGACAGCTAGCTAAAATGTGCTTAGATTATGGCGTGAGGGTGCAATATTCAGTTTTTGAATGCGAAATTGATTCTGTCCAGTGGGTGAATTTTCGAGCCAAACTCCTCAGCATTTATAATGCAGAGGTTGATAGTTTACGTTTCTATCGACTAGGGAAGGAATGGAGAAACAAAGTTGAACATCATGGCGCCAAGCCCGCAGTTGATATCTTCAAAGATCATTTGATCATCTGAATTCTCTTCCGCCAACCTGTAGTCCTCACCAAAAGGCTGGCAGGTTGGCGCGAAACTATTACTATGAAATAAAAGAGAAATTTCTCTAGTCTGTTGATTAGCGGTGTATCTGTGCCTGGTTAACTGTGGGTTGGCGCAAAATGCTTGCTAAAGGTAGACTACACAAGTCCTTGCAATAAGGGA # Right flank : AATCGGGATGAGGGATTGCAGACGGTTGGCCCTGCCGTATTCCATGTAGATATGTGGGTTGAAATTGTGCTGCTTTGAGTAAATCTCATTAATCTTTATGGATTTCAAAATCCCAGGCTTTAAACGGCCTGGGGTTTTTTCGTTGCGCCGCGGACGGCCTGAAAGCAAAGCGGCCCCGACAGGGCCGCCTGTGTAGGTTCAGCGCGGGAACACCACCGTGCGGTTCTCATAGAGAAATACCCGCCGTTCCACGTGCCAGCTGACGGCGCGCGCCAGGGTTACGCGTTCGATATCTCGTCCTTTTTCAATCAGATCCTCCGGGTAGTCGGTATGGGTTACCGGCTCCACGCTCTGGGCGATGATCGGCCCTTCGTCCAGCTCCTCGTTGATATAGTGCGCGGTGGCGCCCACCAGTTTGACCCCTTTGGCCCAGGCCTGATGGTAGGGCTTGGCGCCCTTAAAGCCCGGCAGCAGCGAATGGTGAATATTGATCGCCTTGC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTGCCTCATGCAGGCACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCTCATGCGAGGGACGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.40,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //