Array 1 1849744-1851421 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCLE01000001.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL03356 2014LSAL03356_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1849744 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 1849805 29 100.0 32 ............................. GCTTCTGATTGCATTAGCTCCAAATCAGTACC 1849866 29 100.0 32 ............................. GCGTCAGGCGTGGTGGCCGTGATTACGGACGA 1849927 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 1849988 29 100.0 32 ............................. GGCTAACCCATGAACACTATTACCAAATTCAC 1850049 29 100.0 32 ............................. GTTGCCGCCCTTACTGCGCGAGGCGTTGGAAC 1850110 29 100.0 32 ............................. GAGGGGCCGTCTGCCGCATATCAAACGCTATC 1850171 29 100.0 32 ............................. CAACACGAAAGAAAAAATACTCAATATTATTG 1850232 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 1850293 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 1850354 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 1850415 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 1850476 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 1850538 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 1850599 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 1850660 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 1850721 29 100.0 32 ............................. CTTGCAGCCGAATACGGTATAGAGTGGGACGG 1850782 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 1850844 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 1850905 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 1850966 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 1851028 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 1851089 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 1851150 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 1851211 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 1851272 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 1851333 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1851394 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1867680-1869661 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCLE01000001.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL03356 2014LSAL03356_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1867680 29 100.0 32 ............................. TTGAGGTTTGCGTTGAGCCTGTTCAGCATCAC 1867741 29 96.6 32 ............................C GCTGACTCTGCGGCGGATCTTCTCAACCAGTC 1867802 29 100.0 32 ............................. CCTAGAAAAGTTTGTTTAGGCAATCAAGCCCC 1867863 29 100.0 32 ............................. GTGTTAATTAATGAGTTTATTCCGTTTTAACA 1867924 29 100.0 32 ............................. AAATTTGGTTGACAGTAAAAGAGTGTGTCGGT 1867985 29 100.0 32 ............................. TCGGCTCGAGCACTTGCGACAACAAACACACG 1868046 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 1868107 29 96.6 32 ..C.......................... ATATGAGGCAGCTCGCTGGCGGCTGGGATGGT 1868168 29 100.0 32 ............................. CCGTTTTTTTCCCACAGTTTGCCACCGAGACG 1868229 29 100.0 32 ............................. TTAAGTCGCTCTTTGTACGCTACACCGGAGGC 1868290 29 100.0 32 ............................. AAATATCCAGAGCTGGGCTTGAGGCTGACGGT 1868351 29 100.0 32 ............................. TAATTGACATACATTCACCATATTAAGGAAGA 1868412 29 100.0 32 ............................. CCATGCGCGGCGGCGCTTGCCCAGCTCAGAAA 1868473 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 1868534 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 1868595 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 1868656 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 1868717 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 1868778 29 100.0 32 ............................. GACCTATCAGCCTAATTTCCGGGGCAAGAGCT 1868839 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 1868900 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 1868961 29 100.0 32 ............................. GCGTTTATTTTTGATTTGTTATTTGGACGTTA 1869022 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 1869083 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 1869144 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 1869205 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 1869266 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 1869327 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 1869388 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 1869449 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 1869510 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 1869571 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1869632 29 96.6 0 A............................ | A [1869658] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTCAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4545598-4545776 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCLE01000001.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL03356 2014LSAL03356_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================== ================== 4545598 31 100.0 46 ............................... TTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA 4545675 31 100.0 40 ............................... CTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATN 4545746 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ============================================== ================== 3 31 100.0 44 AGGTAAGGAGGTGATCCAACCGCAGGTTCCC # Left flank : TTCCACTAACACACATGCTGATTCAGGCTCTGGGCTCCTCCCCGTTCGCTCGCCGCTACTGGGGGAATCTCGGTTGATTTCTTTTCCTCGGGGTACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGACGAGTCACACTGGGTTTCCCCATTCGGGTATCGCCGGTTATAACGGTTCATATCACCTTACCGGCGCTTATCGCAGATTAGCACGCCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCTTACGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCTGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAAGCTACAAGCCTGTAGAGGTTTTACTGCTCGTTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA # Right flank : CCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTGTGTACAAGGCCCGGGAACGTATTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCGCTTGCTCTCGCGAGGTCGCTTCTCTTTGTATGCGCCATTGTAGCACGTGTGTAGCCCTGGTCGTAAGGGCCATGATGACTTGACGTCATCCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTTGAGTTCCCGACCTAATCGCTGGCAACAAAGGATAAGGGTTGCGCTCGTTGCGGGACTTAACCCAACATTTCACAACACGAGCTGACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCAT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGGTAAGGAGGTGATCCAACCGCAGGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA //