Array 1 546697-548844 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDPK01000016.1 Listeria monocytogenes strain Lm60 contig000016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 546697 36 100.0 30 .................................... TAATCGAAAACGGAAAATCGAAATTGGTCC 546763 36 100.0 30 .................................... GTGATAGTTCTGTTTAGATCTACACTTTTT 546829 36 100.0 30 .................................... ACGTTCTTCCGCAGAGAGTTCAACGTAACT 546895 36 100.0 30 .................................... TTAGTATGTCGTTTCGTTTCTGGAAAACCA 546961 36 100.0 30 .................................... AATGAAATGGATTTAAAGACTATCTATGAC 547027 36 100.0 30 .................................... CATATTATTCTCCCTCCATTAATCCGCGCG 547093 36 100.0 30 .................................... ACCCCTCTTGAAATTGAGACGAACGGAGGG 547159 36 100.0 30 .................................... AATGAATTTATAGCATTTATCGAACCAATT 547225 36 100.0 30 .................................... CACTGCTGTAGCCGCTGTTTTAGCCGCTCC 547291 36 100.0 30 .................................... AAAAACCTGTTGTCCCCTCCGCAGTGGCTC 547357 36 100.0 29 .................................... AAAATAAATCATTCTATAACACGGATGCT 547422 36 100.0 30 .................................... CTTCGGTGTATCCTGCCAACCGTAGCGCTT 547488 36 100.0 30 .................................... TTTCTGTCAGTGTTTCATCAACACTTATCA 547554 36 100.0 30 .................................... GAAAACATCTATCAGACTCAAGACCAAACT 547620 36 97.2 30 .....................T.............. TTGATGAAAGGTGTTAAGGACATCATAAGC 547686 36 100.0 30 .................................... AAAATATAATCAGAAGGTTTCGGGCTACCT 547752 36 100.0 29 .................................... TCCAATGCTTTTTTTACATCTCTCGGAAT 547817 36 100.0 30 .................................... TTGGATATTAACCCTTTTCAAACATCCGCA 547883 36 100.0 30 .................................... CCCTGCTTTGTTGTACAGGAAATATTATTC 547949 36 100.0 30 .................................... ACCTTACGGAAGATAACCGCATTGGCTTGA 548015 36 100.0 30 .................................... TCAGCAAGATTTAGATCACTACTTGTTCAC 548081 36 100.0 30 .................................... TTCATCTGTACCCTATCAAGTATTAGCCGA 548147 36 100.0 30 .................................... GCGGCTAAAGTGATTTGACCTTTACAATCT 548213 36 100.0 30 .................................... TACTGCTCCATTTGTCCCTTTCGCAAAGCC 548279 36 100.0 30 .................................... GCATTAAAGCATTTGCGCCACGCAACGTTT 548345 36 100.0 31 .................................... CAGGCGCGTGCGCGACGTTTCTGTCAGGCGC 548412 36 100.0 30 .................................... AGTTATTTGGAACAATGGTAATGGAACACA 548478 36 100.0 30 .................................... GACTTCGAAATGGAGTTATTGACTCTCAAA 548544 36 100.0 30 .................................... AAGAGCCGGAGCTACTTCCTGGCACCACAC 548610 36 100.0 30 .................................... TAAAAGTAATGAATTATTCAGAACCAAGAA 548676 36 100.0 30 .................................... TTTTTTGATCTATTAGTAAACTGTTCGAAT 548742 36 100.0 28 .................................... TAATATTCTCCCCCCATCGCTAACAGGG 548806 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [548831,548837,548840] ========== ====== ====== ====== ==================================== =============================== ================== 33 36 99.5 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAATTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //