Array 1 190471-191050 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRLX01000002.1 Cronobacter sakazakii strain 249G contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 190471 29 100.0 32 ............................. CGCTGGCGCAGGCCCGCGCGCAGAACGCACAG 190532 29 100.0 32 ............................. GGTAAAACTATCTCTGCCCCGTACTGGCAACC 190593 29 100.0 34 ............................. CCCGCAGAGAAGCGCAATGCGGAGATTGAGAGGC 190656 29 96.6 32 .T........................... TTTTTGTTTACCGGTACTTTCTAAACGGCAAG 190717 29 96.6 32 .T........................... CCAGATAACGTTAGAGATGGTGCGCTAATGCA 190778 29 93.1 31 .T..........................A TACGCCCAGGCGTCAGACGCATACAGGCTCG 190838 29 100.0 32 ............................. AAGCAGACAAACTGGAAAGTTGTTATCTGGAA 190899 29 96.6 32 ............T................ ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 190960 29 96.6 32 ...................A......... TACTTTGAGAAAACCGCGCAATCTGTGCTGGT 191021 29 82.8 0 .............C...A..A....T..T | C [191046] ========== ====== ====== ====== ============================= ================================== ================== 10 29 96.2 32 CCGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCTGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACCGTTAGT # Right flank : TCCCGCGTTCTTCGCGCCTGTCAATCGCCGCCCTCATTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCATCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGTGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTG # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 217152-217546 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRLX01000002.1 Cronobacter sakazakii strain 249G contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 217152 29 100.0 32 ............................. TGCCCGCGCAACGTCTGGCGGGAAAAAACATT 217213 29 100.0 32 ............................. GTAATGTTGACCTGTTTTGGGAGAGTGGAGAG 217274 29 96.6 32 ............................T GAGGCGCAGCTGGTCAACGCTGTTGTCTCGTC 217335 29 96.6 32 ............................A CCCTCAAAGCGCCGTTTTAACTCTCTGGTGTC 217396 29 100.0 32 ............................. TTCATACGCCGCACCAAAACTACTACCAACAG 217457 29 100.0 32 ............................. TGCGCAGGGTTCAAATTGGGGGGGATAACTGA 217518 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTGGCCGCCGGTGAAATCGAACCACCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAATGTCCCGCCCCGCCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCGCGAAAAAGTGTAATAAATACAGTTATATAGTTTTAGA # Right flank : GTTGTTGAGTAGAATCGCCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATAAATTGCCAGGTCCGATGGGTGCGCTTCGCTTACCCAGCCTACATATAAACTGGCGGGCCTGCCCTTAACCGCCCCACAAAACTTTTCCCGCACCTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCGGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 507573-507358 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRLX01000002.1 Cronobacter sakazakii strain 249G contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ============================ ================== 507572 34 97.1 28 ......................A........... CGGCCCACGGAACAGGCGTTAATGGGGA 507510 34 97.1 26 ..................C............... TGGCCCACGGAGCGGAAGTTGACTGA 507450 34 100.0 25 .................................. TGGCCACGGGACAGGCGTTGATGTC 507391 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ============================ ================== 4 34 98.5 27 ATGTAGGGTGGGTAAGCGAAGCGCACCCACCACA # Left flank : AGCTGATGCTCTACCCTGCCGTACAGGCGACGCGCGAGGCCGTTGAAGCGATTGCCGAAGCGGATTTAATCGTGATTGGCCCCGGCAGTTTTTATACCAGCCTGATGCCGCTGCTGCTGCTTGACGATCTCGCCAAAGCGCTGCGCCGCACGCCTGCGCCGATGGTTTACATCGGCAATTTAGGCCGCGAGTTAAGCCCGGCCGCTGCTGCGCTCAGGCTTGAAGAGAAGCTGGCGCTGATGGAAGCGCATATCGGTAAACGCGTGGTGGATGCCGTGGTCGTTGGCCCGAAGGTGGACGTGAGCGGCGCGCAGGACAGAATCGTGATTCAGGAGCCGCTGGAAGCGAGTGATATCCCTTACCGCCACGACCGCCATCTGTTGCGCGCAGCGCTGGAAAAGGCGATTCAGGCGCTGGGGTAAGCGCTATGGGTGCAATGGGGTTACGGCGGGTGCGCTTCGCTTACCCGCCCTACGGCTCCCGCAATGGGCTTTGATGAT # Right flank : CCACAACCCCCGTCACAACCAGAAGAACTTACGAGGCAGCGATAAACAGCTCGCGCAACTGATGAAGCTTATCGCGCAACTGCGCCGCCTCTTCAAACTCCAGGTTCTGCGCGTGTTGCACCATCTGCGCCTCAAGCTGATGAATTTTCTGCTGCAACGCTTTCGGCGTCAGCGCCAGTTCAGCGGCTTCGGCATCTGCCACGGTGCGCCCTTTTCCGCGTCCTTTCGGCTTGGTTTTCGCAATATTCTCGCCAAGCGCCAGAATATCGACCACTTTCTTATTAAGCCCCTGCGGCACAATGCCGTGCTCTTCGTTATAAGCCTGCTGTTTCTCACGACGGCGTTCGGTTTCGCCAATCGCCTTCGCCATCGACGGCGTGATTTTATCGCCGTAGAGAATCGCTTTGCCGTTCACGTTACGCGCCGCGCGGCCAATCGTCTGGATAAGCGAACGTTCGGAGCGCAGGAAGCCCTCTTTGTCGGCGTCGAGAATAGCCACC # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.24, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTAGGGTGGGTAAGCGAAGCGCACCCACCACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.00,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA //