Array 1 997916-999041 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051310.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM 35161 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 997916 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 997977 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 998038 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 998099 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 998160 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 998221 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 998282 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 998343 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 998404 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 998465 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 998526 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 998587 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 998648 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 998709 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 998770 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 998831 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 998892 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 998953 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 999014 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1015299-1016962 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051310.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM 35161 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1015299 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 1015360 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 1015421 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 1015482 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 1015549 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 1015610 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 1015671 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 1015732 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 1015793 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1015854 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1015915 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1015976 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1016037 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1016098 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1016159 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 1016220 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1016281 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1016342 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1016403 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 1016464 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [1016506] 1016506 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1016567 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1016628 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1016689 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1016750 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1016811 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1016872 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1016933 29 96.6 0 A............................ | A [1016959] ========== ====== ====== ====== ============================= ====================================== ================== 28 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //