Array 1 372129-377810 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019240.1 Rhodoferax antarcticus strain DSMZ24876 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 372129 37 100.0 34 ..................................... AAGCCGAAAGCGTTTGCAGCCGCCTCGACAGCCA 372200 37 100.0 34 ..................................... AACAGCCATACCGCCGAGGGGGCCACCGAGGGCC 372271 37 100.0 34 ..................................... GTTAGTTCTGCTCTCAAGGTTTCTCCTTATCTTG 372342 37 100.0 34 ..................................... TCTACAACAGGTTTATCTACAACAGGTTTATCTA 372413 37 100.0 35 ..................................... CGGGCATGGGTGTGGAGGCTCCTGGGTGTGAGGGA 372485 37 100.0 34 ..................................... CAACCCGGACATTCGTTATGGTCGGACGGGCGCT 372556 37 100.0 34 ..................................... ACACGTCAGTCGCTGGCGTTGATTCGACGCTGGT 372627 37 100.0 34 ..................................... CATTTAACGCAGAGTTGAGCGCCCCATAGGGTGC 372698 37 100.0 34 ..................................... CCTGCTCAGTAACAGCGTAAACCCCCTCATATCC 372769 37 100.0 34 ..................................... ACCGCATAAGTTTGACAAGTTCGATAGCTCAAAG 372840 37 100.0 34 ..................................... GTCGCCGCTATATTCGGTGTCCATCAGCAGTGGT 372911 37 100.0 34 ..................................... CAATTCGAGTTCGTCGGCCCGTTGTTCCAATTGG 372982 37 100.0 34 ..................................... CAGCTGCGTGCTGGGCTTCGGAGATTGTTTCGCC 373053 37 100.0 35 ..................................... AACTGCTCCGGCGGTTGTCAGCCTGAATTGCACCT 373125 37 100.0 34 ..................................... GATGTTAAGGGGTCAATGATGCGCTGCGCTTCAC 373196 37 100.0 34 ..................................... AACATGGTCCGGTTCTTGTGGCGCTCCCCCAGCT 373267 37 100.0 34 ..................................... ACGTTACACCTGTAATTACAGTTAGTTTGATCAA 373338 37 100.0 35 ..................................... TCAATTTAACGGCTTCTCTTGTCGGTCGCGTGCTT 373410 37 100.0 35 ..................................... CACGTTAACGGGCGGGCGGTGTGTCTGTAATGCGC 373482 37 100.0 33 ..................................... GGCAATGCCGCTGCCCCAGGTGGTGACGTTGGC 373552 37 100.0 35 ..................................... ACCTTGGTAGAGGTGGCGCGCGACATCGCTCAGTA 373624 37 100.0 35 ..................................... GTGAAGGGTGCCAGCTACCAGGCGCGCCTGAAGAG 373696 37 100.0 35 ..................................... AGCGACACACACTTTGACATTGGCAACGGTAAGGA 373768 37 100.0 35 ..................................... GTTTCGTCATACCCGCCGTGTTGTGGGGTGCCAGC 373840 37 100.0 34 ..................................... TTCACCAAGCGCCTGAACGTCTGGGTGAATGGTG 373911 37 100.0 34 ..................................... AACGCGGGTGCCGCCTATTTCCCCAGCCTTGAAG 373982 37 100.0 36 ..................................... AGCAGTACGGTGGATCGCTTTCGCGGGGCGTATGGC 374055 37 100.0 34 ..................................... TGCAGCCTTACCGCATAGGACTGGGAGTTTAGAT 374126 37 100.0 34 ..................................... ATCAAGATCACGCGCCAGCTGGCGATGGACAACG 374197 37 100.0 35 ..................................... ACCGGCTACGCCAGCGCGTTCAACCGCGTGGACAG 374269 37 100.0 35 ..................................... CGCTCAAGGCTCGACACTACATATTGCGACTGGCA 374341 37 100.0 34 ..................................... GTTGTCTGCATCGCCCGAGCGTCTTTGCGGTCGC 374412 37 100.0 33 ..................................... ACCATCAACCGGCGTTTGAGTCGGTTTTTTTAC 374482 37 100.0 35 ..................................... GACTCCATGCCCGATGCCGAGTTCAGAAAGCTGAT 374554 37 100.0 34 ..................................... CCAAAATACCAACGGTCATGGGCGGCAATGGCAC 374625 37 100.0 34 ..................................... AGCATTAGCTGGGCGTTGGCCGCAATCTGGCTGG 374696 37 100.0 35 ..................................... ACGATGAATACAGCCATTTTGCCGACGCTTTTCGC 374768 37 100.0 36 ..................................... ACCAAGCACGCCGACGAAGGTGTACACGTAAGCGCA 374841 37 100.0 34 ..................................... TGATTGGTGAGCAGGCTTGGAAGCAGAGTCATGC 374912 37 100.0 35 ..................................... ACGATGAATACAGCCATTTTGCCGACGCTTTTCGC 374984 37 100.0 36 ..................................... AGCATTCGCACACTCGTTGCGGAGGCGTCAGCAGGT 375057 37 100.0 34 ..................................... GGCACTACATCGATGCGCTGCTGAATGCACTGAT 375128 37 100.0 34 ..................................... ATCCTGGCCATGGATGATGCGTTGGCTGCTACCA 375199 37 100.0 34 ..................................... AGTCGCATGATGGGTGTCGAGGGCTCAAAATCCG 375270 37 100.0 35 ..................................... ACTTGTGTAGCCAGGTTGTCTGGTAGACAGCGGGA 375342 37 100.0 35 ..................................... GGCGTTACAGAAAACCAATCTTTGGGCGGGGCATC 375414 37 100.0 35 ..................................... TCAATCGTCTTGGAGTACTAACATGATGCATTACT 375486 37 100.0 35 ..................................... GTCCGTATGCCATCTGCCCCACCAGGCATCCGCAA 375558 37 100.0 34 ..................................... ACATTCGGCTCGCAGGAGTGAGCAAAAGGCAATC 375629 37 100.0 33 ..................................... CCTGTGCTGACCAGTGCGGTGGTGGCGACTACT 375699 37 100.0 34 ..................................... ACGCCCTTGCGCCAATGATGGGCCATTGCGCCGA 375770 37 100.0 34 ..................................... CAGATACCGCCCCTCGCTGATCGCAATCGCCGGC 375841 37 100.0 34 ..................................... AGGCGGGGGGACATTCAAGGCAAGATGTGCGGGT 375912 37 100.0 34 ..................................... CAGCTTTCCGGCGCGCCTGCCACCGCCATATCTC 375983 37 100.0 35 ..................................... ACCCGGCGCTCACTGTGGCGGCGCACGGTGCCTTC 376055 37 100.0 36 ..................................... CGCCGGAACAATGCCCCGGTCGAGCAGCGCCTCGAG 376128 37 100.0 34 ..................................... AGAAAACACCCAGTAGCCGCCCGGCTGACGCAAC 376199 37 100.0 35 ..................................... CCGTCCTACGCCTTGACCAATAACAACGCCAATAT 376271 37 100.0 34 ..................................... ACCACGTCTGCCCGCACTGCCACGGCAAAATCAC 376342 37 100.0 34 ..................................... CATGTAGTTCTTGCCGCCCACACACCGCCGAGCA 376413 37 97.3 35 C.................................... TCCTTGTAATTTTGGTAAGTGGATAGGTTGACCCC 376485 37 100.0 34 ..................................... AGGCAGGGCCAACTGCGCGCCGTGGCGGCCGGTG 376556 37 100.0 34 ..................................... ATCTGGATGCTCCTTTATTGTCGGTTTCGGTCAA 376627 37 100.0 35 ..................................... ATAATGCCGCCGCCTGCACAAACAGCGCATCAGTG 376699 37 100.0 35 ..................................... ATGGCATCGCTCTCGACATGGGACGTATTTGGGCA 376771 37 100.0 35 ..................................... ACGCTGGATTTGTTTGAGGAAGCACCGGCCACCAG 376843 37 100.0 34 ..................................... AACTGCATGGCCGAAGGCCATCCAGCATTGAGGC 376914 37 100.0 34 ..................................... GGCCTTCGGGCTGTTTTGCCCCCCAAACCTTGCT 376985 37 100.0 34 ..................................... TTCGTTGCCATTCCTTAACCTCCAAGTAAGGCGC 377056 37 100.0 35 ..................................... TTGTTCACGAACGCCGTGGCGTAAGGGGAAGCGCT 377128 37 97.3 34 G.................................... AAACCAAATCAACCTCTAGACCTTGAGGAACAAT 377199 37 97.3 34 G.................................... CAACACACCATGACACCAGCGCAAGCCCTGGACA 377270 37 97.3 34 G.................................... TTGCCACTGCGTTGTCGCGTTGCGGGGGTCGTAC 377341 37 97.3 35 G.................................... AGGCCAAACACCAGCGCATCGTCCCAGCCGCGCAT 377413 37 91.9 38 G...................A...........A.... ACCAGCGCCGTGGCAGACTCAAGAAGCGCGCTACGGGG 377488 37 97.3 34 G.................................... ATCGCGAAGCCGTTGTAATAAACAGTGCGACCCT 377559 37 89.2 35 G.........................GT........A ACCCTGACGCTGGCTGACGGGCTGCCCGTTGAGGC 377631 37 97.3 35 G.................................... CGCATTACATCAAGTGCGAGCCGTCGCTGTTTCAC 377703 37 94.6 34 G...................................T TTAAAACCCTTGGAGTAAATGCACCATGACCCAC 377774 37 97.3 0 G.................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 80 37 99.4 34 AGTTCGCCCGCCAGCAATGGCGGGCGCGGATTGAAAC # Left flank : TGTTATGACGTGAACACAGAAACCAAGGCGGGCCGTCGCCGTTTGCGCCGGGTAGCCCGGGTCTGCGAGAGCACCGGGCAGCGGGTGCAAAAGTCGGTATTTGAGTGCCAGCTAGACGTGGCGAGGTTCGAGGCGCTGGAGCGGGAGCTGTTGGCCGAAATCGACCCTACCATGGACTGCCTGCGTCTTTACAGAATTCCTGGTACGCGCGGGTTTGAGGTCATTGAACATGGCACGTTCAAGGCCGTCGATTTTGATGGGCCTTTGGTGCTCTAGCGAGCGGTTCGGCTGGCTGCGCCAGCACCACCGTGGTATGGTTAGAACCGCGAACCCCAAGTGATGTTTACTGTACCAAGAGGTTCGCGCGCTTCGTAACCCGTTGTTTTGAAACACTTTATATTTTTTAGAGACTTTCCACTTTTGCAAACGCATGCCTTCATCATCAGGTTCGCGGAAATGCTCAAAAAAATTGTGAGCCGACAAGGCCTTGGACTCGAAGC # Right flank : CCACCTATGACGTGCCCATTGGCAAGTGGGTTGACGGGTTCGCCCGCCAGCAATGCTCTAAACCAGTTTCTTCAACAGCTCAACCTTCTTGCCGTCAAACTCTTGCTGCGTCAGGATGCCTTTGGCCTTGAGTTCGCCGAGTCTTTCCAGCGTGGCAATCACGTCTTCGGGCTTGACCTCGGCCACAGCCGCTAGCGGTGCCGCGGCACTGGTGGCAGAGGCCTGCAACCCGGCGGTCAGGTTTTGCGCCATCACTTGGCCCAGCGCCACACCCGCGCCCAGGCCCATCGCATCACCGGCGATGCCGCTACCGCCACCACCGCCACCTGCCCCGCCTTCGGCGAATTTTGGGATGGCCTGCGCGGTTTGGTACTGCATGAACTTGCCCATGTCGTTGCCGACCATACCCATGCCGATTTTCTGGTCGAGTACTTTTTGCAGGTCTTCAGGCAGCGAGACGTTTTGTACCGTCATGCCTTCGAGCTTGAGGCCGATTTTCT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTCGCCCGCCAGCAATGGCGGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCATCGCCCGTCAGTAATGGCGGGCGTGGATTGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-18.20,-17.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1623234-1623967 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019240.1 Rhodoferax antarcticus strain DSMZ24876 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 1623234 37 100.0 31 ..................................... ATAGATTTCGTTTTGAGTTCATCAGGTACAG 1623302 37 100.0 32 ..................................... TGCGCTGCTGCTGCGCGTTCTTTGCGTATCGC 1623371 37 100.0 34 ..................................... GGCAGTTTCGAGTTCATCGTTCTTTTTATCCAAC 1623442 37 100.0 31 ..................................... CCGAAGTCGCCTCTTGATGCTCACCCGCGCC 1623510 37 100.0 33 ..................................... TTTTTGCCCTCATAGGTTTCGATGTGAATCTCG 1623580 37 100.0 34 ..................................... GTCCAACATAGCGACAATGTCGCCGCGTCCGATA 1623651 37 100.0 34 ..................................... ATACCTGCCTGAATCAGTGCGTTTTCCGCCGTAC 1623722 37 100.0 33 ..................................... CTCTGAAGACTGTTCAGCTCGTACTGCTGTTTC 1623792 37 100.0 33 ..................................... CATCACAAAGTCATACACCACGATAGGGCGCAG 1623862 37 100.0 32 ..................................... AGCACCAACAAACGCAGAATCTTGCTGCTCCT 1623931 37 94.6 0 ............C..................G..... | ========== ====== ====== ====== ===================================== ================================== ================== 11 37 99.5 33 GAACGAATACCAGCCCTGAATTCAAAGGGATTAAGAC # Left flank : CGCCGCAGGGGCCGCCGCCGTAACAGCCTTGTTTGAACGCTGGACCGCACGCAACGCCAGCGCGCTCACCGTGCACCTGGCCTGCCTGCACCGCACAGCCCTGAAAGCCATGCACCAATGAGCCAACACGCCACCGCGCAATGGCTGGTCACCTACGACATTGCCGACCCACGCCGGCTAAGCCGTTTGTTTAAGTACCTGAAAAAAAACGGAGTGCCCGTGCAATATTCAGTATTTCTGGTGGAAGCATCCGCAATCAGAATGGCGGCAATGATGGTGCAGATCGACAGCATCATCCACCCACAAGCTGACGACGTGCGGGCCTACTGCCTGCCCGACACCCTGTGGCAGGCGACGCTGGGCAAGAGCATCCTGCCCGCGGACACCCTGCCGGGCAATGACTTTTTGCTGCGATGAAATCACTGGCCATCACACCATGTCGGAAAACCGGCAAGTAGCAACGGAAGTGCTTGATACACTTGCGTTTTTCCGACAATGCG # Right flank : CCCGTCTTCAACCGCGCCTACGTCCCCGATGTGACCACCAAGGGCTAACCCGTAGCCGGGTAGCAGCCGCAGCTTTCTACAATAAAAGCACGTTCGTTCTTTTTGAAATTGGAGGCATCCATGTCCGTTGACTACACCGTGCAGGGCCAAGTGGCCGTGCTCACGCTGAACAACCCGCCGGTGAACGGTCTGGGCCTGGCCACACGGGTGGCGTTGACTAACGGCCTGGCGCGGGCGCTGGCAGATGAGGCGGTGGTTGCTATCGTTATTTCCGGGGCGGGCAGGGCGTTTTCTGGCGGGGCCGATATCACCGAATTTGGCTCGCCCAAGGCGTTTCAGGAGCCTAACTTGCTGAGCGTGATTTTGGCCGTGGAAGCTGCCACCAAGCCGCTGATTGCCGCCGTGCACAGCGTGTGCATGGGTGGCGGGCTGGAGCTGGCGCTGGGTTGCCATTACCGCATCGCCGCGCCGGGTTGCCAGGTGGCGCTGCCCGAAGTCAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAACGAATACCAGCCCTGAATTCAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //