Array 1 316570-318184 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXBZ01000002.1 Salmonella enterica strain BCW_2523 NODE_2_length_500622_cov_3.51161, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 316570 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 316631 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 316692 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 316753 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 316814 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 316875 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 316936 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 316997 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 317058 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 317119 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 317180 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 317241 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 317302 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 317363 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 317424 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 317485 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 317546 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 317607 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 317669 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 317730 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 317791 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 317852 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 317913 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 317974 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 318035 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 318096 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 318157 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 334317-335793 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXBZ01000002.1 Salmonella enterica strain BCW_2523 NODE_2_length_500622_cov_3.51161, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 334317 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 334378 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 334440 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 334501 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 334562 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 334623 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 334684 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 334745 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 334806 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 334867 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 334928 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 334989 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 335050 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 335112 29 100.0 74 ............................. AAGAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 335215 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 335276 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 335337 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 335398 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 335459 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 335520 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 335581 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 335642 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 335703 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 335764 29 96.6 0 A............................ | A [335790] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //