Array 1 30404-31099 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CUES01000016.1 Staphylococcus haemolyticus strain 278-10, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
     30404	    36	 100.0	    30	....................................	ACGTAGAAAGTGGGAAGTGTCAGAAACCGA 	
     30470	    36	 100.0	    30	....................................	ATAGTTTCTTCATCTTCTTCATCGTCACCG 	
     30536	    36	 100.0	    31	....................................	GTTGCACATGCTGATGTAAAGTCTTCAGTTT	
     30603	    36	 100.0	    30	....................................	TTATTGAGTTTTTTACAGACTTACCGGATA 	
     30669	    36	 100.0	    30	....................................	TACTGTACAAAATGAACAGTGCAGTCATGA 	
     30735	    36	 100.0	    30	....................................	TTCACGCGTTACACCTAAAAGCATTACCTA 	
     30801	    36	 100.0	    30	....................................	AAAGTGGTTATCCTGAATGGATTATCCCTA 	
     30867	    36	 100.0	    30	....................................	ATTGAAAAAGAAGTCGATGCATCAGAAATG 	
     30933	    36	 100.0	    30	....................................	AAGATGGTCGTTCAAGTAGCTATGAATCAC 	
     30999	    36	 100.0	    29	....................................	CAACTTTGTTTGATCAATCATAGTTTATC  	
     31064	    36	  77.8	     0	.................C........C..A.ATTTA	|                              	
==========	======	======	======	====================================	===============================	==================
        11	    36	  98.0	    30	GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAGAC	                               	       

# Left flank :   CGATACAAACATAATTGTATTAACAGGATCATTACATTTCCTATCTGAAGAGTGGAAATACAATAACTATATTAGAGATGGGAAACAAAAAAACACATCTGAATTTCTAGAAGAATTAGAGTGGAACGCGCCACTTGATTTTGATAAGAAGGATTTAGAAGAAAGTTTGAACCGATTCATTTTAACTTATCAAGATAAATTAGAATTATATCCCATAATATCAAACTATCAAATAGCACAAATTATGTTATTTAATGCCATAGATATATATGTTGGGATTTCATATATGCAACATTGTAATCATAAATTTAAATTAAAAATCAAAAGTGAATTGCTGCCTAAAAGCATCAATAAATATTTAAATCAACAATTGCTGAATTAATTACTTTACTATAATTAACTTAATAAATTATTATTATCTTAGTGAATGAGTTTAGCTAACTTGTTCACTAAGATACCTTTTTTTGAACTAATTCTTTTAGCGATTAATATTGCTAGAG
# Right flank :  AAATTAATGATTACTAAGTGCTGTTACTTGCTACTTTTATTATCATGATCAATCAATTGATCAAAAGTATAGAAATATTTAAATTTAATAAAAATATTAGTTGACTAAGCATCCATGATAGCAATATAATTAATTTATAGAACAAGTTTAGCTAACTTGTACTTATACCTAAAATTACAGAATCTACTAAAACAAGACTTTATGTCGTGTTTATCCCATTAATTTATTAATGGGATTTTTTCTTTTTAATTAGACAAATCGCCAACGATGATGACTATCGTTGGCGATTATTTTTGTTTAATGTCACTTAATTACACATTATCATCAGTAATTTGACCAATCCAATAACTCGCTGCAAATCCAATGATTAAAGTGATGATTGAAAGTGTCCACTCAATACCAGTTTGAGGAAGACCAGGGAATACAGCATATATGGAGCCAATAACGAATCCAGTTATTAATGCGAATGTGGTATAGAAGTGATGATGTAGGAAGTATTT

# Questionable array : NO	 Score: 6.16
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAGAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-3.60,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-8] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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