Array 1 50-567 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXIJ01000007.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_2057 NODE_7_length_88398_cov_2.15854, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 111 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 172 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 233 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 294 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 355 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 416 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 477 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 538 29 100.0 0 ............................. | A [565] ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCTCTTCCGATCTACCACCAATAACCGAAATATCCACGGTGGAAATTTCG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1423-2427 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXIJ01000167.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_2057 NODE_167_length_2439_cov_1.6977, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1423 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 1484 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 1545 29 96.6 32 ........T.................... TTGATTTACCCGCCACTTATTCCCCATTGCAT 1606 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 1667 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 1728 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 1789 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 1850 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 1911 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 1972 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 2033 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 2094 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 2155 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 2216 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 2277 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 2338 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 2399 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : CCAATAGATCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51251-52314 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXIJ01000015.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_2057 NODE_15_length_58543_cov_1.96291, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51251 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 51312 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 51373 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 51434 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 51495 29 100.0 32 ............................. TCATGCTTTCGACTAAATACTACCGCGACAAC 51556 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 51617 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 51678 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 51739 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 51800 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 51861 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 51922 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 51983 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 52044 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 52105 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 52166 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 52227 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 52287 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //