Array 1 1860144-1857932 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009623.1 Staphylococcus agnetis strain 908 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1860143 36 100.0 30 .................................... CTTTTTGTTTTGGTGTCATTAGTTATCCTC 1860077 36 100.0 30 .................................... TTTTTCATCAATAAAAATTGAACCGTCCTC 1860011 36 100.0 30 .................................... CTTTTTGGAATCCTGCAATTGACGCTGGCA 1859945 36 100.0 30 .................................... TTATATCAAAGTCTGATAAACGTTCAGGTA 1859879 36 100.0 30 .................................... GCTTATGTACAAGATGTACATGACCACATA 1859813 36 100.0 30 .................................... CGTAGTAAATTGTAAGTTATTTTTAGAAGA 1859747 36 100.0 31 .................................... ATCTCTTTTGTACCCTCTTTTTAGTAACTCA 1859680 36 100.0 30 .................................... TTGTTTAAGGTGTAATCGGATATGAGCCTG 1859614 36 100.0 30 .................................... CAAAACATCTGTACAGCTCGATATGGTTCG 1859548 36 100.0 30 .................................... AATATTTGTTAATAAACAATGGATTACCAT 1859482 36 100.0 30 .................................... CTTCTTTATCTAATTTAGATAAGCCGTGAT 1859416 36 100.0 30 .................................... GCCGAATTTGATTGATAGTGGCAAGACGTT 1859350 36 100.0 30 .................................... AAAATGGTATCACTAAAACAACTGCTGTTA 1859284 36 100.0 30 .................................... CTATTTAAAGTTTAATTGGCTGTGAGGCTC 1859218 36 100.0 29 .................................... ATATACGCCTTTATATCGTCGTTTAAACT 1859153 36 100.0 30 .................................... TAACAATGGCAATCCTATCGCTGCTATTAC 1859087 36 100.0 30 .................................... AAAACATCTACGACAAGCGAATGAAGAAAT 1859021 36 100.0 30 .................................... GCATATGTAATAGCTATTAGAAAGCCTGAA 1858955 36 100.0 30 .................................... GCACGATATCAACTAATATATCGACGAAAC 1858889 36 100.0 29 .................................... TTTGTCTCTTTTGATATTTAGTTAATGAC 1858824 36 100.0 30 .................................... AAGTGAGATTACTTTCTGAACACAACAATA 1858758 36 100.0 30 .................................... GATAACTTCAATTGCACTACAAAAGGCACC 1858692 36 100.0 30 .................................... CGGGCGACCTTAAAAATGTACAACTCTGTT 1858626 36 100.0 30 .................................... TCACACCTCTACTTAAATTGTTCGGCCACC 1858560 36 100.0 30 .................................... GTATGACATGGCTACAAAAGACGGTACAAT 1858494 36 100.0 30 .................................... ATGGAACAGTTAATGAAGATAGCATTAAAC 1858428 36 100.0 29 .................................... TAAAATTTTGCGATTCGTTCTTTCAGCTT 1858363 36 100.0 30 .................................... AAAGGACTAGAGAAATCTTTTGTTCCGTCT 1858297 36 100.0 31 .................................... CTGGAGACGCACGCTATACTCAATGGATGGA 1858230 36 100.0 30 .................................... CTTATGGGAGTTCACAGATTGCAGATGATA 1858164 36 100.0 30 .................................... GGCGAGTACATCAATAAGCCAGTAGACACA 1858098 36 100.0 30 .................................... GATGATTGACTGGCAACTTATTGAAGTTGG 1858032 36 100.0 29 .................................... CCAAAAGAATCGGCGTTGTGGCGCAGAAA 1857967 36 77.8 0 T........................G.TTT.AT..A | ========== ====== ====== ====== ==================================== =============================== ================== 34 36 99.3 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Left flank : GACGTTCACGATGTACAATAACGCCATCTTCATTTTCTTTTTCATTATTTTCAGTGTGAGCTGCAGCTATAGTTAAAATGTTGTGGTCAAAATCAACGTGAATGTCTGATTTTGCCATACCTGGAAGTTCAGCGCTTACAACATATGCATCTTCACGTTCAGAAATATCTGTTTTAAAAGCTTGAGATTGCATTAAACCTTGCCCAAAATCTTTAAAAAGATCACTCGGATTCATATCAAAAATAGAATGATTAAATGGTTTTAATTGGAATGCCATAAAGCATCGCTCCTTCATATTTTAGAATGTCGCAAATATCAAGAAACTGAAATGGTAAAGGTCACATCTAATCCTTTACAATCTTATTATATGACAAAGGGCAAAAATAGTCAGGGTCAAAGTATTGTGGTGGATGTAAATTAAAATTTATCCAAAATACGTAAAGATCAGTGATATCAATGGATTAGACAAACTTAAAAGTTATAGTATACTGTAGCTAGAG # Right flank : TGTGCTATTTATGAAATATCTATATAAGCGATCCATTTATTTTAGCGATAACCTCATAAAATTGTTTAACTCAATGAAATAAATGTTATTTAGGTGGAAGTTATAACACTCACTCTATAAAAAATATCAGAAAATTCTTGACTCAAATGGATCTTATGATAAAATAAATTTACAAGTACTTATTTGTGCTTATACCTAAAATTACAGAATCTACTAAAACAAGACTATATGTCGTGTTTATCCCACTAATTTATTAGTGGGAATTTTTTTGTTCTTCTTTTATAATAGTATTCAAAAGGGAGGGCAATGTATAAATGAATAATTATATACTAGGACTCGATATAGGTATTACCTCAGTGGGATACGGTATTGTAGATAGTGATACGCGTGAAATTAAAGATGCTGGGGTACGATTGTTTCCAGAAGCGAATGTAGATAATAATGAAGGAAGACGTAGTAAAAGGGGAGCGCGACGTTTAAAAAGAAGACGAATTCATAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //