Array 1 36899-36091 **** Predicted by CRISPRDetect 2.4 *** >NZ_AODU01000016.1 Pectobacterium peruviense strain UGC32 C15_001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36898 28 100.0 32 ............................ ATGCTGGCCAGCGCTACAGCTAGCCCCATGTC 36838 28 100.0 32 ............................ AGCACGCGCAAGAATGACTAGCAGGGATGTCG 36778 28 100.0 32 ............................ CAACGCTCAAACAGATTAACGGCGATAGACGA 36718 28 100.0 32 ............................ AACAAGCGCGTATGCAGGCCAACGCGGATTAT 36658 28 100.0 32 ............................ GTTGAAATATTTCAGTGATTGCGATGAAGATA 36598 28 100.0 32 ............................ TGATTGGTGAAATGGACCCAGATGCCGTGGAT 36538 28 100.0 32 ............................ TGTATAAATCTATCTTTTCCCCCTCAAATCCC 36478 28 100.0 32 ............................ GTCAGATTCTGATATTGAAATAATCTTGGAAC 36418 28 100.0 32 ............................ GCCTGAGTCGATGGATATGCCCTCTCAGAAGG 36358 28 100.0 32 ............................ TCACGGTAACGCTGCATAAAGTAATCACGCTC 36298 28 100.0 32 ............................ TTACGTTGGCGACGGCTTCGGGCCGCTTCACT 36238 28 100.0 32 ............................ GCTTTCGTATTCTACAGTCATTACTTTATCGC 36178 28 100.0 32 ............................ CGAACCACGGGTGAACCAGTTCCCCTGCCCCT 36118 28 78.6 0 A..........T.........C..TTC. | ========== ====== ====== ====== ============================ ================================ ================== 14 28 98.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGTTACGGAGGTGCCGGTTCCCAGCATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTGACATATTCGACACGACCACCGTTGACGAGAATACGGCAATGTTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTTCCGTAATAGATAATAGCCATAACGCCAGCTAAATAAATCGCAGGCTAACTATTTGATAAGGAAAAATATAACTTTCAGAAAACTGATGAAAATCAGCCTATCACAGTTGCATGTGAAAGATGATGACCGCAAAAAATTTTACCCAAACGTAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATGAGTTACAGATGGGGTTAAAAAAAGGGTTTTTACGAAGAAAATGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACA # Right flank : CAGCACTCAGGCGCTGCTGTCTGGTTATTATCGAGGTAGCACTGCGCCAGCGCTCAATGCGCTGTAGCTCTTAAATAACGTATTGTTGATGGCCTATTTTCGTAATGTTTTCAAGTAATGGGTTTCTTTTGGTGGGAATGGAAAATTGCAGATTGAATTTTATTAACATTTTAAAATCACCATTTTTCCGTTAAAGTGCACTTACAGGGAAATAGTTTGTTTACTTAAGTAAAATTCGAGGGAGTGAGGCACTTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGATTATCGATTAGAAGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGGAGGAAGCGACGTATTTTTTACAAACGTTATGCACCCCTAATCCTAATCAATCGTGGAAAATGGCCATGTTTGGCTGTACCGATCCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 46586-47213 **** Predicted by CRISPRDetect 2.4 *** >NZ_AODU01000016.1 Pectobacterium peruviense strain UGC32 C15_001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 46586 28 100.0 32 ............................ TGGCTGAATGAGGCCGTGGAGGCTGCGGCTAC 46646 28 100.0 32 ............................ CAGTCGCTACCAAGCGCATTAAGTGCAGGGAC 46706 28 100.0 32 ............................ TGGTCTTCACTCAACCCTTGCGCACTGGCCAC 46766 28 100.0 32 ............................ AATTATTAGCGCGTTCTAATACATGCCCTTTG 46826 28 100.0 32 ............................ AATCGGAGCAAGTCATGCAGAGAAATCAAAAT 46886 28 100.0 32 ............................ ACCTGGAAGACGCACTACGCCTGAATCCGCTG 46946 28 100.0 32 ............................ TTGCTTTAACAACCACCGTCTGAACTCACTGT 47006 28 100.0 32 ............................ CAGCCAGCTTATCAGGGGGCCATCAAGCCATC 47066 28 96.4 32 .............C.............. AAGCAAATAGACTCCATATTTGAGCGTAACGG 47126 28 96.4 32 .............C.............. ATCGCAGTGATGAAGATCCCCGCAGCCTCCCC 47186 28 75.0 0 ............GC......T.C..GGC | ========== ====== ====== ====== ============================ ================================ ================== 11 28 97.1 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CCCCTCTTCGACTACATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGCTCTTCTTGCAGAAACGAATGCCAATTGGGTTTGACTGGGCGCAACATGATGGTATCCCCTTCACGCACGATCTCCAGTTCATTGACGCCTTCAAAGTCCATATCACGCGGTAAGCGAATAGCACGATTATTACCATTTTTAAATACTGAGACAATACGCATAATGCACCTCCTCTTAATACAGAATTCAGCCAGCCGCTAGCCTGACTAAAACATAGGTTAAGTATAGATTTGAATCGTTCTCTTGTATATCCGCGGCATATGTACGCACCTAACATAGGTCTACCGAGAATAGATAAAATCGTTGCCACAGGGTTGGCACCCTTTTTTCACGGACACTTGTAACTCATTGATTTTTAATATCGATTAAGCGCTATGATAAAAAAGGGTTTTTCGGGAAAAATGGTTTATTTTCTTTTAAAATTAGGTAACTACCGTAAAATAGGAAC # Right flank : CTTATCGGGGATACGTTGCTGGTACGACTCGCTTCAAGGGTGTTATTCCCCATTCAGCGTAACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAAATGCCCTGCCAGGTACCGATGTTCAGGCGTCCGTTGGTGATGGGGATTGTCAGGCTGTTTCCCAGCAGGCTGCCTTTCAGATGCGCAGGCATGTCGTCACTGCCTTCATAAATATGGCGGTAGTACGGTTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACTGTGGGGTCGGCATTCTCATTAATCGTCAGCGCCGCCGAAGTATGTTTGATGAACACATGCATCAACCCGACCTTTATCTGGCGCAGTGCGACAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATGATTTGGCCTCTCGATATCAGGCTTCGCGTGCCAGAAT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //