Array 1 45679-44552 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOLH010000001.1 Micromonospora sp. CMU55-4 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 45678 30 96.7 31 .............................T CGTACGAAATGGCAGCCGACGACGTGACGGC 45617 30 96.7 31 .............................T ACGAGGGTGCGATGTTGCAGGAGCCGAAGCG 45556 30 100.0 31 .............................. CGTCGCCATCGCCACCGACGCCGCCGACTTC 45495 30 96.7 31 .............................A AGTACCCCGACACCGTGACCGTTCTCCTGTA 45434 30 100.0 31 .............................. CTCCGGCGCCGAAACCGGCCCCGGCTCCAAC 45373 30 96.7 31 .............................T CGCCGGTGGGCAGGTAGACGGTTTCGTAGTC 45312 30 96.7 31 .............................G GCCCGCCGGTCACCTGGCGGGCCCTTCCCTA 45251 30 96.7 31 .............................T CCACTCACGGCCTCAGCACCGCCCAGTCGTC 45190 30 96.7 31 .............................T GCGCTGAGGCGCAGGGCTGGCGCGCGGCGTT 45129 30 96.7 31 .............................G TGGGCGCGCAGTCCGTGGACGACGAGCCGTG 45068 30 96.7 31 .............................G GATCATGGCGCTCGCGCCGGCGCTCGCCCCG 45007 30 96.7 31 .............................G CGTGCGGGTCGATCTGACGCCGACCGCTGAC 44946 30 100.0 31 .............................. CGTGCTCGGTGCGCAGCCGAACCGCCAGCGT 44885 30 100.0 31 .............................. TGGTCACGGCCCGGGGTGAGCACCTGGTGCC 44824 30 100.0 31 .............................. GGAAGATGGTCCCGGCGACGCTGTTGCAGTC C [44819] 44762 30 93.3 30 ............................CA TGCCGGGCGGCGCGGACGAGTGTACGTGCT 44702 30 100.0 31 .............................. ACCGCGAGATCGGGCGGGGAGTCAGGTCGGG 44641 30 96.7 30 .............................A GTATTGCCACGGTCGGCGTGTTGATCGCAT 44581 30 83.3 0 .....A...G.C...C....A......... | ========== ====== ====== ====== ============================== =============================== ================== 19 30 96.9 31 GTCCTCCCCACGCACGTGGGGGTGCTCCGC # Left flank : CGCCGACATTCAGCGCCTGCTCGATCCCGACAGCGCACCCAAGCAGCGTCAGCCCGCTGCCGAAGTCACCTCTCTCTGGGATCCGGACATGGGCTCTGTGCCGTCCGGGGTCAACTACGGCTCGGACTCCTGGGACTGACATGGCCTCGATGGTCGTCCTCGCCACCACCGCTGTGCCCGACCACCTCCGGGGTGCGCTCAGTCGTTGGATGATCGAAGTAACCCCCGGCATGTTCGTCGGCACTCTGTCGGCCAAAGTCCGCGATGAACTGTGGAACGCCGCGAGCGCAGTGGTGGGCGACGGTGCTGCCGTTCTCATCCACCCGGACGACACCGAGCAAGGGTTTTCGCTACGGACAGCGGGAGAGCGTCGACGGCGCCCAGTGGACTTCGACGGCCTTACCCTCGTCGCCATGAGTCCGAAGGAAGATCCGCGGGCCGCTCAGGAGCCGGTCGAAGAAATCTGGCCGGAGGGCTGGTAAAGCCGCAGGTCGCGAAGT # Right flank : GAACCTTCGAGTTGCCCACGACAGCGCGTGCACCTGTCGACGCCAACGGTCACGGCGTGCCAGACCCTGCGAATGCTCCCCGGCTCTCGGGCGGCGCACGGAAGGCCGATAACGATCATGTAACGGGCGCGAACCTTTTCGTGGGTGTCACTGCTCTCTCTCGGCATCGGCCCGCCGGGGCCAGGAGAGGACGTCGGATGAAGCTGGTGTGGAGGCGGGCGGTAGAAGCCCGTGGGCTGCTGCTCGCCGCCGCTGTCGCGGCACTCGTCGCGGTCGCGTTGGTCACCGGGCTCTCCGACTACAACCGCCGGGCGGTGGACGCGGGCGCCCGGGCGGTGCTCGACGCCGCCCCGGCGGAGGAGCGCAGCCTGTTGATCAGCGGCTCCGGCGGGGCGGACGCCGCCGCGTACGCGGAGCGGGACCGGGCGGTACGGGCACAGTTCGCGAACGGGCTGGGCGGGGCGCCGGTCACGGTGGCCGGGATCCGCTCCGGCACCGGG # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGCTCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCACGTGGGGGTGCTCCGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 54643-56621 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOLH010000001.1 Micromonospora sp. CMU55-4 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 54643 30 96.7 31 .............................C TCCCCCCGGGCGAGCCCCTGCGCGCGTGGGT 54704 30 96.7 31 .............................T CGATGTGACCGCCGTTCTCCCGCAACGCCTC 54765 30 96.7 31 .............................T CGGTGAAGGTGTGCAGAGCTCGGGCGACGAC 54826 30 100.0 31 .............................. TCGAGCACCCGATCATGGTGGGCCTGCGCGG 54887 30 96.7 31 .............................T TAGCTCCCGGGTCGCTTCCCGGGTCGCTTCC 54948 30 100.0 31 .............................. CTTGGGTCGAGGTCACAACCGACCTGGACGG 55009 30 96.7 31 .............................T TCGGGTCACTGCCGGTCGGCTGCTTCCCCGT 55070 30 100.0 31 .............................. CCCGGGCGGTGATGGACGAGCTGGGCATCGC 55131 30 100.0 32 .............................. AACTCGACCAACTGCGGCAGGCCGCGCTGAAG 55193 30 100.0 31 .............................. CTTCAAGGTCAAGTACGAGACCGCCGTGTGC 55254 30 100.0 31 .............................. CCGGGCACTGGCAGTACCCCAGCTACCTGGC 55315 30 93.3 31 ............................AC CAATCCCACCCCCGTGGCCCCCGCACCCCCG 55376 30 100.0 31 .............................. TCCACGGGCAGAAGATCGGCAAGAGCAGCTA 55437 30 96.7 31 .............................A CGCGGACCGGCAGCTACAGCGGGCTATCGGG 55498 30 96.7 31 .............................C TGTAGCGGGCGTCGTGCCGCTGCTCATGTCG 55559 30 93.3 31 .........C...................T CGGCGTCGAGATCGTCCATGACCTGGACGAT 55620 30 96.7 31 .............................A GGGGTGCACGTCGAGAATCACGGACATTTAT 55681 30 100.0 31 .............................. CGTTCCAGCGGGCCCGCAAGCTCACCGCGGA 55742 30 100.0 31 .............................. ATCGGCCCGGTTACCACGAGTGCTGGACGGC 55803 30 96.7 31 .............................A TGATCGCGGCGTTCTGGGTCGACCTGACGAT 55864 30 90.0 31 ............A.T..............A TCCTGAAGGTGGGCTGACGGGAGGTCCGTCG 55925 30 100.0 31 .............................. GCACGTTCGACCTGCCGCACTACTCGCGGTG 55986 30 93.3 31 ............................CC AGCACGCCGTCAGGGCGCCGTCGCCGCGCAG 56047 30 96.7 31 .............................T TCCTCGACCGGTCCGGTGGGCTGAACATGCA 56108 29 93.3 31 ........-....................T CGGTGGGGATCTCGTTCGGGTCGTCAAACTC 56168 30 96.7 31 .............................A TGCGCGGCCGGTACCTGAAAGGGCAGCCGGG 56229 30 93.3 31 ..............A..............C CGTACGACGTCTCCGGGGTGAGCGCGCACCC 56290 30 100.0 31 .............................. GCCACGTCTACCAGCCGACTGCGCCGGCACC 56351 30 93.3 31 ..........T..................A AGTCCGTCCACACCGTGTTCGTGGTCAGGAA 56412 30 83.3 31 .....TA.....A...............AT TCACCCTGACCGGAGAGAACGGGCTCACCAT 56473 30 90.0 31 .......................T..A..T GGGCGGGCCGGGCGACGTTGGCGTTCGCGGC 56534 29 83.3 30 ...............A.-....CA.C.... AGACGGGGCCGCGGGCGTCCACGCTCCCGC 56593 29 83.3 0 .C..............C.......-...AT | ========== ====== ====== ====== ============================== ================================ ================== 33 30 95.6 31 GTCCTCCCCACGCACGTGGGGGTGCTCCGG # Left flank : GTGGCCCCAGAAGATCGGGTAGACACAATTGGCCAGCCGCATCGTGTCGGAGCGAACCATCGCCTGACGTGTCCTCGTACAAGCCACAAGCGAGCAGTGCTCCGAAGGCAGCCTCGTTCTTCTTCTGGAAGCCAGGCGAGACCTTACCGACGTCGTGCAGCCCCGCCCAGAACATCACCAACGACTTGGCGTGAGAATCGCTGGTGCCCAGCCCTTCCGCAATGACGCGGCGCTGATTCGGGGCCAGGTAGCGGTCCCACAGTTCCCCGGCGACGGCAGCGGTGTCGATCAAGTGCCAGAGCAACGGGTACGGCTTCAGAAGCTGGCTAGACTTGCCCCAGATCCCGGCGTCGACCGCTTCATGGTCGAAACCCAAACCGATCACCTCCGCTCCACATCCCGCTCGTGAGGGCAGCCGCATGCAACCACGGCCGTACGACACTTCAGCCCGGCCAGCGCAAAACCGCACAGTGGGCCGATAAACCCGCAGGTCGCGAAGT # Right flank : TCTATATAGCCTGCCCGTCCTTGACGCTGAGCGGCGGGCCTGGTGCCTAGTTGGCTGGCACCAGACCCGCCGCCCATATAGTTCAGGGTCGGTCGTTCAAGCCACCCGCGCGAACCGACCCGACGAACCGGGTCCAGGCCGTCGGGTTGAAGCTCAACGCCGGTCCCTGCCGATCCTTGGTGTCCCGCACGCCGATCGTATCGGCGAAACCGGCCACCTCGACGCAATCGCCATTACTACCGGACCGGGACGACTTGCGCCACACTCCGTCACGCTCCATCGAGCATCTCCTTCGCTATCGCCCCGATCAACTCGCGGGACTCATCCGTACCGAGCGCCCGCTCCGCGAGCGAGCGCCACGCATCTTCGTAGATCTGGATTTCGTGGGGCTTGTCAAGGTAAACGGCACCACAGGGTCCGTCCATATAGATCGTGGTCGGCTCCGGTGCCCGCACCTCCGTTGGGAAATCAAGCATCGTGAAGGTACCGGTGGACGCCCA # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGCTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCACGTGGGGGTGCTCCGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //