Array 1 2099612-2101335 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025826.1 Akkermansia muciniphila strain EB-AMDK-11 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 2099612 31 100.0 34 ............................... ATCGTATGCGGGCAGGCCCATTTCGCCGCAAAAG 2099677 31 100.0 34 ............................... TAAAAAATAATGATAAATTGAATGCATCAAAGGG 2099742 31 100.0 34 ............................... CCGGCGCGGGGGCCAACATGTCTTGTCCGCTTGT 2099807 31 100.0 34 ............................... CGGACGGCTCTCTATTCTGAAAATCAATCTCCTA 2099872 31 100.0 33 ............................... TTTATCAACTCTAATAAGTTTTTTGTTCATGCG 2099936 31 100.0 33 ............................... AGTTTCCATGATTGTTTCAACTTCTCCGGTGCG 2100000 31 100.0 34 ............................... CACATGGAACATTTACAATTTAAATCCAAAAGAT 2100065 31 100.0 34 ............................... TTTATTGCCTGCGCACAGAAGTGTCCATGTCCAG 2100130 31 100.0 35 ............................... TGTTTGGTTGATTGTTTTGTTCACCGCCCCTTATT 2100196 31 100.0 34 ............................... AAGGTTGTATGACAAATTACAAATAATTAACATG 2100261 31 100.0 36 ............................... CTGTTCCGCAATCAGGGCAATGTCTTTTTGCTGACG 2100328 31 100.0 35 ............................... CGAAAGATATAGCGGCGGCCTTTATGCTGACTCCC 2100394 31 100.0 33 ............................... CCTACCAGATGGCCCGCATAGGCATTTCCGCGG 2100458 31 100.0 34 ............................... CCTTTGGAGTGCGTTCTTAACCCGTTTTTTAGCG 2100523 31 100.0 34 ............................... TGCTTGCCCATGCCCGCTTCCTGGAATCGAAATT 2100588 31 100.0 34 ............................... CGGCGATAAGGTTAATGGTTGCGACTACATGGGG 2100653 31 100.0 34 ............................... AGTTTGTCTTTATTCATAGTCTATTGTCTTTCTA 2100718 31 100.0 35 ............................... GTTTACCCCGGGTCCGGTCGGGCAGGGGTGGCAAA 2100784 31 100.0 34 ............................... TGAATGCTACGTCCTGCCAATTCTGGGAGATGAC 2100849 31 100.0 34 ............................... ATGCCCCCCTCCTTTCCACGATTTGAATCCTGCG 2100914 31 100.0 34 ............................... AATAGATAAAAACACTTATAACCGTATCGTGTTG 2100979 31 100.0 33 ............................... AAACGGTGATGGTTCTCTCAAGGCTAGCAACAA 2101043 31 100.0 35 ............................... ACACCGTCTTGTGCAAGTCCATGACGGCGGTATGG 2101109 31 100.0 34 ............................... AAGCTCGCTTTTAATGCGGTTCCCCTGCTTTTTC 2101174 31 100.0 35 ............................... GAGGCAGAAAAGCCAATGCGCACCCATGTTGACGG 2101240 31 100.0 34 ............................... AAAAATGATATAAAAAATATACTAAGGCCCTAAA 2101305 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 27 31 100.0 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGTTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCGTTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTCCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAGCGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCCGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : CATTCCCGCCTACTTCTACGTCATCCGCTACGAGCGTCGCTGAGGAATGACAGGAGAGTTGATATAAGTTGAATCAGGGTTGAAATCCGTTGGAACCCTAGAAAACACGGGAGTTAAGCAGGAACAGGCCAGGCACGAGCTATCTTATAAAAGTCGGAGCTAAAAAGAGGGCAGATGACAGGTATCTGATATAAGTACACAAGCTATGCAGGGATGTTGCACAAGATCTGCAAAGGGTAGGTGATAGAGAAACGACAAGGTAAAAAATCATGATAGGATGTCCCGCATGTGTACACCTGCATATTGCATTCCCTTGTATGGCTCCATGACTGTTATCTCGCCCGAAGACCGAAGGAAAAAGAATCCGCAAATTTATCATCTCCATGATACCGCTGTCGTGTTGATGTGGACAACTCGTGAAAGAAGTAAGACGACATGCTGGGTGCGGGATGGTCGCACCCTCACGGGTGCGTGAATTGAAGTTTTATGTATGTTTGACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2593348-2589302 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025826.1 Akkermansia muciniphila strain EB-AMDK-11 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2593347 33 100.0 33 ................................. TTGCGATATGAGGCTACCCGGCCAGTTGCCTAT 2593281 33 100.0 34 ................................. TTGGCATGGTCGTCGTAAATGCTCATAATCTTAT 2593214 33 100.0 34 ................................. AAGTAACGGAAATCACTTCCGAAGGCCGTTCCAT 2593147 33 100.0 34 ................................. CGCTGATACCATTTCCAATTCCCGGCCGGTTGCG 2593080 33 100.0 34 ................................. TGTTTCTACAAGTTAGATACATTTTAATTATATA 2593013 33 100.0 34 ................................. CTTTTTAGGGACTAGGTATAAAAAGTTTCCCCCT 2592946 33 100.0 33 ................................. ACGGGCCTTGCTAACCACTTCCGGCAATTGCAC 2592880 33 100.0 34 ................................. ATAATAGTCCGGGGAATGTACGTCTACCGCACCC 2592813 33 100.0 34 ................................. GGCAAACAGGACAAGGGACAGGACGCCGGAACCG 2592746 33 100.0 34 ................................. TGTCACCTACGGCGCAGGACTGCCCGCCGCACAA 2592679 33 100.0 34 ................................. AATATAGGCATATCGGCCTGCCCCCTCATAATAG 2592612 33 100.0 34 ................................. CATGATTGTTTCTACCTCGCCGGACGGAAAAATG 2592545 33 100.0 33 ................................. CCCGTGCCTGAAATAAATGTCTTCCGACATCGG 2592479 33 100.0 34 ................................. TCCGGATGCTGGAAAGGCTGTTGGAGTTGGCCCC 2592412 33 100.0 35 ................................. CGGATGCCACCGGGTGCCGATGACGAACACCCGCC 2592344 33 100.0 35 ................................. CCTTGATTTTCTACTGGATTCTTTAAGCGATGACA 2592276 33 100.0 34 ................................. TCGCGGAGACCGTATCAGATTCCCGGCCGGTTGC 2592209 33 100.0 33 ................................. AGGGGGGCAGGGGGTTATACCCGGCTTACCAGC 2592143 33 100.0 33 ................................. TGCGATACGAGGCTACCCGGCCAGTTGCCTATA 2592077 33 100.0 34 ................................. ACCGGTGGAAAGGATTGCCCACACCGCCGTTACA 2592010 33 100.0 34 ................................. ATTGTTTTGGTTCCTTTCTTTTAGTGTTTCTTTT 2591943 33 100.0 34 ................................. TTTTAGTTTAGTTTAGTGTTTATTGTTTCGGGGG 2591876 33 100.0 33 ................................. CCACATGGACGACCTTGCCGCCGCCGTAGACGG 2591810 33 100.0 34 ................................. CCTTGATTTTTTATTGGATTCTTTAAGCGGTGAC 2591743 33 100.0 34 ................................. CCTTGATTTTTTATTGGATTCTTTAAGCGGTGAC 2591676 33 100.0 34 ................................. TTGTATAAAGTCCACCATCTTGACGGCACCTGCA 2591609 33 100.0 34 ................................. ACAGGAACGCCCCCCCCTCCGGGAAGAAACCGGC 2591542 33 100.0 34 ................................. CGCAAAAATGACGAGGGACAGAATGCCGGAGCCG 2591475 33 100.0 33 ................................. GATTGTTCATGATTTAGTTTCCTTTCTTCTTTT 2591409 33 100.0 33 ................................. CTTTCGGTTGTGTTCCCCGCCCCATAGTAGGGC 2591343 33 100.0 34 ................................. AACCCCGTCTAAGTAGTCCACATCGCCTAAGCGG 2591276 33 100.0 34 ................................. TATTGTTTATTGTTCCGGGGGTTGCCCCCGTTGA 2591209 33 100.0 34 ................................. ATTTCCGCCGTCTACAGCGGTAGATAAATCCATC 2591142 33 100.0 33 ................................. ATCGTACTTGGGCAGTCCCATATCTTCACAAAA 2591076 33 100.0 34 ................................. AAAACGATTGTAGTTGATCTGCTCGAAGACGTTT 2591009 33 100.0 34 ................................. AAGGCCAAAAGCCCATTTAGCGGTGTAGCCCATG 2590942 33 100.0 34 ................................. TGCCCTGGGACCTTAAGCCCGCCCTCGCAGACCT 2590875 33 100.0 33 ................................. TTAAAATATAGTGTTAAATTACATTCATCAAAG 2590809 33 100.0 33 ................................. CACATGGAACATTTACAATTCCAAAAGAAGCCA 2590743 33 100.0 34 ................................. TCGCCGAAACTGTTTCCGATTCCCGCCCTGTTGC 2590676 33 100.0 34 ................................. CCGGTTCCCCGGACGATATTTTCCGGGGGAAAAG 2590609 33 100.0 34 ................................. CCTCAAAAACGTCTCCATGTCTAAGGGGCCATAG 2590542 33 100.0 34 ................................. TGTGGGGTCGGGGTCATCGGTGCCAAGGTCTCCA 2590475 33 100.0 34 ................................. CACGTGGAACATTTACAAGTTGAATCCAAAAGAT 2590408 33 100.0 34 ................................. CCCCGTATATTCATCATACATGGGCAATCCCATT 2590341 33 97.0 34 ...................A............. CTTGAGCGGGAAGCCACCCGGCCAGTTGCCTATT 2590274 33 100.0 34 ................................. CGTCAAAAATGTGTCGATATCGGCGGGGTCATAG 2590207 33 100.0 34 ................................. TGGACCGCAAAGACGGTGCAATTAAGTACACCCC 2590140 33 100.0 34 ................................. TATCAAGCTCTTGCGAGCCACAAGACCCCTACCG 2590073 33 100.0 34 ................................. TGCGTACTCATGGCATGCGCCCGTGTACATGCTA 2590006 33 100.0 34 ................................. ATGAAGGAACGTTTCCATGTCCGCAAGGTCATAG 2589939 33 100.0 34 ................................. CGGGTGCAAGTACTTAAAGTGGTTGGCAAGGCCC 2589872 33 100.0 34 ................................. CGTCAAAAACGTGTTGATATCTGCGAGATCATAG 2589805 33 100.0 34 ................................. TGCGAACAGGACAAGGGATAAGATTCCGGAGCCG 2589738 33 100.0 34 ................................. TTAGATGATAAAGAGAGCGGTGTACTCTTTTGTG 2589671 33 100.0 34 ................................. TATTGTATTGTTTAGTGTTCCGGGGGGGTCATCC 2589604 33 100.0 35 ................................. TCCAGCCCCCTCCAATCTCAATCCCTATCGGAATA 2589536 33 100.0 33 ................................. TAGAGAGCGAGGCAGGCCGCCCGGTTGCCTATT 2589470 33 100.0 34 ................................. CCGGCGTAGGACAATCTCCCATGTGCTATGCGGC 2589403 33 100.0 34 ................................. GGAAGCCTCAGCACATCACACATCGCCGCCTGTA GC [2589380] 2589334 33 97.0 0 .........T....................... | ========== ====== ====== ====== ================================= =================================== ================== 61 33 99.9 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTGGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGAGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGTAATGTATAAAGTCGGTTGC # Right flank : CTGAATGGTGATTGTTATTTGCGGGTTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTCCAACTCCTTAAAGAATCCAATTTCCAAAAAAATCCAGGATTTTTGAATCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //