Array 1 91609-90221 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ626868.1 Streptomyces populi strain A249 Scaffold29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================ ================== 91608 29 100.0 32 ............................. TCGCGGTAGCGGGGCATCGCAGGGTCCACGGT 91547 29 100.0 32 ............................. CGGGTGGAACCGACTGGGTGGTCGGACAGTGA 91486 29 100.0 32 ............................. GTCCTCGAGGAGATCAAGGCCGCGCAGCTCGT 91425 29 100.0 32 ............................. GACAACTACAAGGCGTGGTCGGATTCCCTGGC 91364 29 100.0 32 ............................. AAGAGGTAGGCGCACTCGTCCTCGCGCGGCTG 91303 29 100.0 32 ............................. GTGATCACGCCGAGGTCCGCGGTCCCCGACTC 91242 29 100.0 32 ............................. GCCGGTCAGTTCTGGTCGACGATGTGGAAGGG 91181 29 100.0 32 ............................. TCCTCCGGCTCGTACGGCCCGAGCAGCTCCTC 91120 29 100.0 32 ............................. TTCGGGGCGCGCACTACTCCGATGGATCGGTC 91059 29 100.0 32 ............................. TTGCTGGCTCGGATCGCTGAGCTGGAGGCGGA 90998 29 96.6 32 ...............A............. TCACGCCAGGGAATGGGCCGCTTCCCGCCGTC 90937 29 100.0 32 ............................. CGCTGCACCGGACAGGTCGAGGACCCGGTGCG 90876 29 100.0 32 ............................. ATCGGGGCGATCGGCGCGAACCCGTTCGCGCA 90815 29 100.0 32 ............................. AGTTCCCACTCGACGCCGGCCTCGGCCTTGGC 90754 29 100.0 32 ............................. TCACCCGTACCGAGCGGGTGACGGGGTGGACC 90693 29 100.0 48 ............................. ACGTGGGGGTGTTCCGACCTGGGCGCGCGGGACCGGGGCCACGCCGGG 90616 29 93.1 32 .............A..........C.... CTGTTCGTCCTCCATCTTCAGGAGAACCCTCG 90555 29 86.2 32 .............A.....A..C.C.... TCGCAGGCTTCGATGGACACAGTGGTGCGGGC 90494 29 82.8 32 .......T.....A..........C.T.A TTGGCCGTCCACGGGGCAGGCTGGGTGAACCT 90433 29 82.8 32 ...T.....G...AT.........C.... GGTTTCTACGTCCCTCAGGGCGAGATCAACGA 90372 29 93.1 32 .............A..........C.... GCGGAAATGCTGGCTGACACCGTCGCCGTTCT 90311 29 82.8 32 ....C........A......A...C.T.. CCCAACGGATGCATGATCAGAGGCGTCCGCCA T [90305] 90249 29 93.1 0 ...T.......T................. | ========== ====== ====== ====== ============================= ================================================ ================== 23 29 96.1 33 GTCCTCCCCACCGGCGTGGGGGTGTTCCG # Left flank : CCACCGGCGTGGGGGTGTTCCGCTGGGGTAGTCCAGGATCAGCGCTGGGTCCT # Right flank : TCCATGGCCTTCACCCTGGGCGTCCTCCCCAACACCAACCGAATCACCGACATCGTGAAGGCTGTCCTCATCCTTCACCACCCGTCAGCGTGAGGTTGGAAAACGCTCACGGGTCGGATCTCACGGCGGCACTTGTCGTGGTCGCAGCTGCGGTCGACCGGCAGCGCGTCGGGGCGTCGGCGTGGTCTGCCCACCCGGCTTGCGTTCGCCAGAATCTTGTCCAGCAGAGACAGAAGCCGGGTGATGCCACCCAGCGTTTCCGCTGGTCAGCGACACCTCGAGCGGGATGCCCTGCCCGTCGGCGATGAGGTGGCGCTTGCTGTTCGGACGTGCTCGGCAGACCGGGCTGGGACCGCTTTGGGGCCCCGCTGCCCGGCCTGCACATGCGAGGAGCCGGTCACCGTCCGGGATCGGTCCAGCCCGCCCCCGCCCCAAACGTAGACGCAGAGAGCGGTTCCAACACGCACGCATATCCCCGAGCGCCCACACACGTGACCTTC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACCGGCGTGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACCGCGTGGGGGTGTTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [26-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 87550-84227 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ626862.1 Streptomyces populi strain A249 Scaffold23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 87549 29 100.0 32 ............................. GCCGGTCACGATTGCTCCTTGCTGGGGGTGAA 87488 29 96.6 32 ............................A TCGATCAGCCGCTCCACGAACGCGGTGCCGGC 87427 29 100.0 32 ............................. CCGTCTTCCTCGGAGGGCAGGCGGCGGGCGGA 87366 29 100.0 32 ............................. AAACCGTCGGGGTATGTGGTGTGGCCGGTGCA 87305 29 100.0 32 ............................. AAGAGAGAGAAGGAATTCGGTCGGTCTTACAA 87244 29 100.0 32 ............................. GCGCCCAAGGGGTTCAGCCTCAAGGCCTACGA 87183 29 100.0 32 ............................. CCGGACGGCGTGTTCGTCCTGCACTGGCTGGA 87122 29 96.6 32 .............A............... TCGCCGACCAGGCAGACGGCGGCGAGCAGGTT 87061 29 100.0 32 ............................. TCGGCGACGTGGGCCGGTTTCGGAATGCAGGA 87000 29 100.0 32 ............................. CTGTCCCCGGCCACCGACACCGACCCGAAGGA 86939 29 100.0 32 ............................. TCCGCGACGTGGGCCGGATTCGGCGGCCAGGA 86878 29 100.0 32 ............................. CCGGATCTGGTGAGGATCTGGACGAAGGGCCG 86817 29 100.0 32 ............................. GCCAACGGCGGCATCGTCGGCGCCGCCTCCGG 86756 29 100.0 32 ............................. ACACAGAGCCGACATACACCACCCTCGACGCC 86695 29 100.0 32 ............................. GACCTGGTCGGCAAGTCCCTCAACTCCTCCTA 86634 29 100.0 32 ............................. CCGATGAGGACGGCCCACAGGTAGGCGTCGAT 86573 29 100.0 32 ............................. GCGATTCGGTCCTTGCCGGACCGCTTGCTGTT 86512 29 100.0 32 ............................. TGGGCGTGGATCGCGCATCCCCTCCGGTCTCG 86451 29 100.0 32 ............................. ACGAAGCTGTTGCGGGTCGTCGAGCCGGCGGA 86390 29 100.0 32 ............................. TCGCCGGCGCTGAGCCTCTTGAGCTTCATGGT 86329 29 100.0 32 ............................. ACACCCCCCGGGCCCTTCAACTGCCCGGCCAC 86268 29 100.0 32 ............................. GTGGCCACCCCGATGTTGTTCCACTGCGGGGT 86207 29 100.0 32 ............................. CCAGAGTCCAGATGTACACCCAGCCTGCGTAG 86146 29 100.0 32 ............................. ATCGGTCATGCCGACTCCTGGTGCAGTCAGGA 86085 29 100.0 32 ............................. TAGGCGTCCCGGAGTTGCAGCGCCCACCGGTC 86024 29 100.0 32 ............................. TCGGCCGGCTGGGTCACCCAGCAGATGTACCT 85963 29 100.0 32 ............................. CCGAGGAACAGAGCCAGCAGCGCACTGGCGAG 85902 29 100.0 32 ............................. AAGCAGATGTCTGCGGCCGGGTTCTCTAAGGA 85841 29 100.0 32 ............................. GAGCAGTACCAGCAGTGGTCCAAGAGCCTTGC 85780 29 100.0 32 ............................. TACGAGCACCTGGCCCCGCGCATCGGCCTGAC 85719 29 96.6 32 ............A................ ATCGAGTGGTCGAACGAGAAAGAGTTCTCCGA 85658 29 100.0 32 ............................. GCGCCGGCGGAGAGCCGCCCCGGTGGCCCGGC 85597 29 100.0 32 ............................. GACAACCTGCCGCACATCCCGCACCAGAAGTA 85536 29 100.0 32 ............................. CCCAAGACCGCACCCAAGCGGCGTCGGACCTG 85475 29 96.6 32 ..............T.............. ACCCTGACCGCGCCGCGCGACGGCACCCAGCT 85414 29 100.0 32 ............................. CTGCACACGGGCGCGCCTGGCGCGGCGGGCAC 85353 29 100.0 32 ............................. GACCGGGCGTGGCCTGAGGTGTTGGACGAGGC 85292 29 100.0 32 ............................. GTGGGCACGTCGTACGGGCGGCCGTAGATGAG 85231 29 100.0 32 ............................. CAGCAGCAGGTGGTGGCGGCGCGTCCGTTCGT 85170 29 100.0 32 ............................. GAGACGATGCTGTCCTGGAGCAGCTCGTTCGG 85109 29 100.0 32 ............................. CAGGCCTGGCGGTACGCGGGCAACGAGACCCC 85048 29 100.0 32 ............................. CACGACATCCCCGGTCCGCGCCGCGATGACGA 84987 29 96.6 32 A............................ TCGGCATCGAGCAGACCGCCGAACGGCTCGGC 84926 29 100.0 32 ............................. ATGGGCGTGAGCGCGGTCAAGGCTGGCGCGAA 84865 29 100.0 32 ............................. TCGAACCGGCTACGGGCCCGGGTCCGGCCGAG 84804 29 100.0 32 ............................. GCGAGGGCGTCGCGCGGGTTGGTGAGCTTGCT 84743 29 100.0 32 ............................. ACGGGAACGCTGACGACTCAGCAGATCCCGCT 84682 29 96.6 32 .......T..................... ACCGGTCGCCGTATCAGCGGAGACCCGCGCAA 84621 29 96.6 32 ..........T.................. AGGGAGTTCGTCCTGGTCCACATCCTCACCCG 84560 29 100.0 32 ............................. GCGTCGAGCGCGGCGAAGTCCTCGCTGCTCCC 84499 29 96.6 32 ...C......................... CACACCCTGACCACCGGCACCGCGCGCGAGCA 84438 29 89.7 32 ...C....T..................T. AGCTGGCCGGGCCCTGTGCGACCCGGATCCGG 84377 29 89.7 32 ...C..T...........A.......... GCCGTCATCATCACCCTGCCAACCGGGCCACC 84316 29 93.1 32 ...C........T................ AAGGGCGTCAGATCCGACCTGATCGCGCAGAT 84255 29 82.8 0 ...C.....................AGGC | ========== ====== ====== ====== ============================= ================================ ================== 55 29 98.7 32 GTCTTCCCCACCGGCGTGGGGGTGTTCCG # Left flank : CCAGGACGTTCAACTGCTCCTGACCCCAGGCAGCGCAGAGGCTTCCGGGACCGCAGCTGACCCAGGAGATCTTCCCGAACGCCGTGACGTCGAAATGGTCCACCTGTGGGACCCCAAAGCAGGCGTCCTGCCGGCCGGAGTCAACTACGCAACAGGCGGCCCCTGATGCCATCCATGGTCGTCATCGCCACAACAGCCGTCCCCAACCACCTGCGCGGCGCCCTGAGCAGGTGGACCAGCGAAGTCGTCCCCGGAATCTTCGTGGGTGCCGTCTCAGCCCGCGTGCGCGACCAACTCTGGCAAGCCATCACCGAAACCGTCAGCGATGGAGCGGCCGTCCTGGTTCACCCAGCCCCCACGGAACAGGGCTACGCCATCCGCACCGCAGGCACCCGACGCCGTGTCCCCATCGACTTCGACGGACTTACCCTCATCCGCATGACAGCCCCTCATGAGGCAAAGTCTGGGCAAAGCCCCTCCTGAACCCCAGGTCGCGAAGG # Right flank : ACGTGCGTTTTGCAAGCGGGGTATTGGATCAGCGACGTGGGGCCGACGGGTTCTGAGGCGGTGCTGGGGTGGTTGCGGGAGCCGTGTCGGTGTGCGGCGGCTGGTGCGGTCTTCTGCCGGCGGGGTGTTGGCGGGTGCCTGTTGCGTTGGCGAGGGTGTCGGTCAGGTCGGCCAGGAGCGCGCTGGGGGTGTAGGGGGACGCGGTGAAGGACCAGGTGGGGTGGTCCTGGCTGGGGCCGGCCCAGATGGTCCAGGTGGCGAGGTTCTGGTTCGGGTGCTGGGCGGCGAAGGCGTCGAACTGCATGCCCGCGTCGGCGGCCGGGGAGGTCCAGCGGATCCAGCGTCCGTCCACTGTGTGGTGCCATCCGGCTTCGGTGAGCGGCTGTGTGGCGGTGGCGACGGTCTTCCCCTCGATGGGGGAGCCGAGGGCGGTGTCCCAGCTGTTGCCGTCGCCGAGGTGGGCCAGCAGTTGCTCCAGGACGGGTGCGGGGGTGGTGCCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACCGGCGTGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCCCGCGCGGGGGTGTTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 97189-98437 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ626862.1 Streptomyces populi strain A249 Scaffold23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 97189 29 100.0 32 ............................. GAGTCGGGGGCCAGGTAGACGACCCCGTAGCC 97250 29 100.0 32 ............................. CACCGCACGGGTACGAGGAGGACGGCGTCACC 97311 29 100.0 32 ............................. AGGCCGCCGACCCCAGCATCTACCGCGTCCGA 97372 29 100.0 32 ............................. TCGCGGCGCGAGAACTCGTAGCCCTCGGCGTC 97433 29 100.0 32 ............................. CTGACGTAGAAGGCGGAGGCGCAGACCAGGAG 97494 29 100.0 32 ............................. TCGGCGCTCGCCCGCGAGCACTTCCGGAGCTG 97555 29 100.0 32 ............................. CCAGGCCAGGCCCGTCTCGTTCCGCGTCGTCT 97616 29 100.0 32 ............................. TTGAGAACGCCAAGGAGCCCGACGAGGGCGAC 97677 29 100.0 32 ............................. TCCACCAGCCGCTCGACGAACGCGGTGCCGGC 97738 29 100.0 32 ............................. TCAAGCCCCGACCACGCACATGACGCGGTCGC 97799 29 100.0 32 ............................. GAACCCCCGTGTCTGACCCCGCCCAGCAGCCC 97860 29 100.0 32 ............................. ATCATGTGGGGCAAGGCGGGCGCCGTTGTTGC 97921 29 100.0 32 ............................. TCGTCCTTCCTCATCGCTGAGCGCGTGCATGG 97982 29 100.0 32 ............................. GTCAGGGCGAGCAGGCCGCCGAAGACGCCGCG 98043 29 100.0 32 ............................. CAGGGCTTATGGACAGATGGGTGTGCTATAAG 98104 29 100.0 32 ............................. CAGACCGCTCAGGCACACGCCGACCGCATCCA 98165 29 100.0 32 ............................. CGGGGTCGGCTTCGGCTTCGGGCTCGCCGGGG 98226 29 100.0 32 ............................. CGGGGTCGGCTTCGGCTTCGGGCTCGCCGGGG 98287 29 100.0 32 ............................. AGGACGCCCAGGGCCAACCCGGCGTTGAGCTG 98348 29 100.0 32 ............................. AAAACCAATTTCGCGCGGAAATCCGACCAGAT 98409 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 100.0 32 GTCCTCCCCACCGGCGTGGGGGTGTTCCG # Left flank : CGCGCGGTCCTCACTCAGTGGCGCCCGAAGATTTTCGGCCCCGTGCCGAGAGCAGAACTGAAACCCTGAAAGCTTGCCGATGTCGTGCAGCCCCGCGCACAAGCCGACCACCGCGCGCGCCTCGCCCGGCTCGCCTGCGAACCCCATCCCTTTGGCAATGCTCCACCGCTGATTGTCCGACAGATACACGTCCCACAGATGCAGCGCCATGGCAGCCGTATCAAGGAGGTGTCTGACCAGCGGATACGGAGGCAGCCCCGGATCCAGTCCCCGCGACTTTCCCCAAACCGACTCGTCCGGCCCCTCGCTGATCACTCCCGACACGGCCACCCCTCTCCATAGGCCTGCCTGTGGCGCAGATCCAAACACAGACCACTGACACCGGGCGTGGCTGCCGACGCTGGGTAAAGTGACGACATGAGACGTACGCGTCGACATCTCCGGACCACAATGCCAGTAAAGGGACGGCAAAGTCATTCCTAACGCGCTGGTCAGGAAGT # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACCGGCGTGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACCGCGTGGGGGTGTTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //