Array 1 8-1073 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB906446.1 Deinococcus apachensis DSM 19763 F784DRAFT_scaffold00049.49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 ............................. CGTTCCGAGTCGCTCGCGGCCCTCTTGCCCGC 69 29 100.0 32 ............................. CCGGACGAGGCCCCGGCCGTCCGGGTGGTGGT 130 29 100.0 32 ............................. TCCGGGGCGCCCGGGTACGACCTGGACGGCGC 191 29 100.0 32 ............................. AATGTTTCCGCGTGGGCCCTGAACCCCCTGCG 252 29 100.0 32 ............................. CCCGCACCTATGCGAACCGGATGAAGTAAAAC 313 29 100.0 32 ............................. CCCAGACCTGTCCCGCTCGCTGGTCTTCGCCC 374 29 100.0 32 ............................. GTATCGGCGTTCATGTTCCCCCTATGGCCGCC 435 29 100.0 32 ............................. CCTGGCGCCAGGACCAGCCGACCAGCGCCGAC 496 29 100.0 32 ............................. GCGCCCCAGGGACCGTTGGTGGTGGACGGCAT 557 29 100.0 32 ............................. TCCTCCAAGCTGATCTCGCCGGAGTCGAACGC 618 29 100.0 32 ............................. GGGTATCTCGGTGAGGTATCGCTTTGGGAATG 679 29 100.0 32 ............................. GACGGAGGCGGGCGTCTTGGAGGGGGGGGGAG 740 29 100.0 32 ............................. GGCGGGCGGGCGTGAGGGACCTCCCGCGCCTC 801 29 100.0 32 ............................. ACGTACAGGGCGATCACGGCGCCGACGAGGAT 862 29 100.0 32 ............................. CCCCCGGTGTCCTTGCCCAGCGCCTTCTTCTG 923 29 100.0 32 ............................. CGTTCAGCCGGGCTCTCAGTTCCTCCGGCAGT 984 29 96.6 32 .T........................... GGCCAATACTTGCCCCGCGCGGCGGGAGGGCC 1045 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GCGTTCCCCACGCCTGTGGGGATGGACCG # Left flank : GCGCGAGG # Right flank : GTCCGGGGTGCAGCTAAAGCGCGTTTATTAACGCGAATACTGGAAGGTCTGCCGTGGGTTACAGCGGCCTCAACTAGAGGCTGCCAAGAACGTTATGCAAAAAGCGGCTTGAGCTTGTTGCAGAGCAGAACACAGGTGGCCAGGAAATGAAACCCGACGAGCGTGGAGGGTAACCGTTCCAGGTCCCGTCCCAAACGCCTGAATCGTGACAACCACGCGAACGAGCGTTCCACCACCCATCGGCGCGGCAGCAAGATGAAGCCTTTGGATGCCTCGGGGCGTTTGACCACCACCAACTCCACCCCCGCCTCGGTCGCCTGCAGGGCAGTTTGCTCTCCGGTGTAGCCCTGATCGGCGAACGCCACTTCCACTGCCACACCGGTAGCTTCCTGCACCTCCAGGCACAGGTCAAAGACCTGTGCCCTGTCCTGTTCATTGGCCGGAGTCGTCAGCACTGCCAGGAGGTGACCCAGGGTATCCACCGCCAGATGCACCTTGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCACGCCTGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 174792-173421 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB906403.1 Deinococcus apachensis DSM 19763 F784DRAFT_scaffold00006.6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 174791 29 100.0 32 ............................. ATTAGTTCCGATCTGGGCATCTGGGGCGTGCT 174730 29 100.0 32 ............................. TAGGTTTGGACTTTGGTGCATTGTCCATGAAT 174669 29 96.6 32 .........G................... GTGATGGTTGGCAGCTACCGTGAGAGTTGCGG 174608 29 100.0 32 ............................. CTCCGTCGAGAGCGCCACCAGGCCGACGATGC 174547 29 100.0 32 ............................. GTCAGCTGCGTAGTCGTGACCCGCCCCGTTTC 174486 29 100.0 32 ............................. ACGGGTGGCGCGGTCATCCTCGGGGCGGCTAC 174425 29 100.0 32 ............................. CTCCCTCACGGTCGCTCGCTGCCTGTCCTTTC 174364 29 100.0 32 ............................. TCTCTGCCCGATTGTGGGAAGGTCGGCCTCCG 174303 29 100.0 32 ............................. TGGTAATGCTGAAACCGAACACCCGAACCCTG 174242 29 100.0 32 ............................. CCGTCCACCTCATCATCACCGAGCTGCACCGC 174181 29 100.0 32 ............................. CCTGACAGCAGTCTGACGGCTTCAGCGTGCAG 174120 29 100.0 32 ............................. AACCCGAGCTGGAGGCAGCGGTGAGGCGTTCT 174059 29 100.0 32 ............................. CTCTCATAGCTTTTATCAACGAAGGGCAACTG 173998 29 100.0 32 ............................. GCGGCTACCTAATGGATTTGGCCGAGTTGTTC 173937 29 100.0 32 ............................. TTGGCCGTTACGGTGGTGGTGGGGTTGGCCAC 173876 29 100.0 32 ............................. TTCCGCACGAACGCAGTCGGTTCGGAGGCCCG 173815 29 100.0 32 ............................. GGCCAGCACAGAGGCCCTAAATACCGCGTGCC 173754 29 96.6 32 ......................A...... ACGCTGGAGACCGTCCTGGGCGGCCTCTATGA 173693 29 96.6 32 ..................A.......... ATTGGGAGCAGCCTCACCCAGCGCAGAACCCA 173632 29 100.0 32 ............................. CGCGCCCCCTGTGGTCGTGGTGCCCTCAAACG 173571 29 100.0 32 ............................. CCTGGGTGCCCGCCTTCGACCCCGGCTCCCCC 173510 29 100.0 32 ............................. GGCGACAACACGCACATGGTCGTGACGACCCA 173449 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GCGTTCCCCACAGGCGTGGGGATGAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CCGGTACAGCAGGTAGCCGCCGATTCAATCTTGGTTTTTCCACCCTTCGCCGCGTCATGCCTTCAGCCTGCCCGGCAGGGTGACAGGACCCGGCTGCGCTACAGCGCCGCCACCACCGCACGCCGGAATGACCGGGCGAAGCGCGGCCCCATCAAGGCACATAGCCTGGCTTCCCGTTCCAGGGGCCACAGGGCCAGCCGTGCCGCGCGCATGTCCGGCAAGCCCCAACGCAGCCCGCCGCCTAGGGTAAAGCCCAGGCAGACCACCCGGCCCCGCGCAGCCAGCCGCCGCAGCGCCCGGCGCGTGCTGTCCTCCCTGGCCCCTACGTGCCGGGCGAGGTCTGCCGTCCCCAGCGGCCCACCCTCCAGGGCTTCCAGGATGCCCCGCTGAACTCGCCCCGGCCCTCGGCTCATGCCCTCAGTCTGCACCCCATGACCGGTACATGGCGAAGCAGCAACGCGACACTTAGGAGGTGGGCTGCTTCGCTTCACCGGGAAGCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCACAGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCACGGGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 177792-177154 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB906403.1 Deinococcus apachensis DSM 19763 F784DRAFT_scaffold00006.6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 177791 29 100.0 31 ............................. TTCGCGGAGCGCGGCCCGAAGATGCTGGAAC 177731 29 100.0 32 ............................. CGCTTCAGGGCCTGCAGGACTTCCGGGCTCCC 177670 29 100.0 32 ............................. AACTCAGGGTTGGGGCCGAGAGGATGAAGATC 177609 29 100.0 32 ............................. GCGACGCGATCACGACGGCGGCCCGACTCGTG 177548 29 100.0 32 ............................. TTTCTGGCCGACATAGCGATGTTGGGGTCAGA 177487 29 100.0 32 ............................. TGGTGCGAGGATTTAACATTGCCCGGCGTTGG 177426 29 100.0 32 ............................. GCACCAGGCACGGGTGCGTCTTGGCCTCGGGG 177365 29 100.0 32 ............................. GCCCGTTTGGGACGCCCTCGCACCCATCGTGG 177304 29 100.0 32 ............................. GCCATCCGCGAGGGCAACCGCCGCGTGGGGGC 177243 29 100.0 32 ............................. CGCGAGGAGGTGCCCGCATGAACCACGCGCCC 177182 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 GCGTTCCCCACAGGCGTGGGGATGAACCG # Left flank : CCACCATCTCCTCGGCGGCAATTCAGAGGACCCCGATCCCACCGCCCCGGGCGACCTCTGGGACCCTGAGGGCGACGTGCGGGGGGGCATCAACCACGCATGATCGTCATGACCCTCGAAGCCGTGCCCTCCAGCCTCCGGGGTGAACTCAGCCGCTGGCTGATCGAAGTTCAACCCGGTGTGTACGTCGGCAACGCCACCGCCCTCGTCCGCGACCTCCTCTGGGACAAGGTCGTGCAACACGTCCGGACCGGGCGCTGCACCCAGTTGTACCGCGCGAACAACGAGCAAGGCTTCACCATCCGGATGCACGGCGACCCCCACCGCACCCTCGTCACCCTCGACGGCTTCCAACTCGTTGCCGTTCGCAACGCCCGTCATTCAGAATTGCAGGGGGAGTACGACCCTCCTGAGGACGATGACAAATTGTGATGCGAAGGCGCTCCCCCCGGGGACACCTCCGGGGGGACAAACACCGATCCGCCACGTATTCGCGGAGT # Right flank : GCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGCGGCGTTCCCCACAGGCGTGGGGATGAACCGGGTGGCTCACTCGCTGTTTCGACGTGCTGGACGCGTTCCCCACAGGCGTGGGGATGAACCGTCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCACAGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCACGGGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 192768-193101 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB906403.1 Deinococcus apachensis DSM 19763 F784DRAFT_scaffold00006.6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 192768 29 100.0 32 ............................. GACCCGCTGCGGCTGGACGCGGTGACTCGGGA 192829 29 96.6 32 ......T...................... TACGCGACACCGCAGAACCCGTAAACATACCG 192890 29 100.0 32 ............................. CTGCGTTTTCCCGGCCTGCCTAGCGGCGAGCG 192951 29 100.0 32 ............................. TGCCGAGCGGGGACATGCGTGACGCCCCCCTC 193012 29 100.0 32 ............................. GCGAATGCCTACGCCGCCTACCACCGGCACGG 193073 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GCGTTCCCCACGCCTGTGGGGATGGACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC # Right flank : CCCGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCACGCCTGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //