Array 1 61868-63154 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZDS01000004.1 Staphylococcus agnetis strain SNUC 5151 contig004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 61868 36 100.0 29 .................................... ATATAAACGAGAAACAACGAAAAGAAATT 61933 36 100.0 30 .................................... ATGATGAAGATAACAAAATTGAATTAACGC 61999 36 100.0 30 .................................... TAACGTTTCTGTACCAACCTATGCCCGATG 62065 36 100.0 30 .................................... AGAAGAAGAAATGCAGAAATTCCTAATCAC 62131 36 100.0 30 .................................... TTGCGAGGTGACCTATAATGTTTGATATGT 62197 36 100.0 30 .................................... AGGCTGGTTGTTGGATTGTCCCTTGCTGTC 62263 36 100.0 30 .................................... ACCGCTCCGTGTGGCTAAGCACACATGGTC 62329 36 100.0 30 .................................... CTTTTTTTGCTTTTAATTGCGCAGGTGCGC 62395 36 100.0 30 .................................... ACAATGTACGTGGTATGCGTATGGTATACG 62461 36 100.0 30 .................................... TATTTTAAAGCTTTCTTTTGATATACTTCG 62527 36 100.0 30 .................................... TCTGGTGGAGATGTTGAAAAATCAGGAATT 62593 36 100.0 30 .................................... CCCGCCCGGTTCAGGTAAATCACTAGGAGT 62659 36 100.0 30 .................................... ATATTCTTGTTTAAAGGGTTGGATAATCCA 62725 36 100.0 30 .................................... GCTTAGACATTACGCGTAAGTGGACGACGG 62791 36 100.0 30 .................................... ATCCACCGACAATGATGTCGCATTTCCCTC 62857 36 100.0 30 .................................... TAACGATGACCGCACTATGACACTGATTTA 62923 36 100.0 30 .................................... GGACAATAAACCTGAGCCACTAACAGCACT 62989 36 100.0 29 .................................... TAGAATTGCACGTTTGGAAGAGAATGATG 63054 36 100.0 29 .................................... CCAAAAGAATCGGCGTTGTGGCGCAGAAA 63119 36 77.8 0 T........................G.TTT.AT..A | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 98.9 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Left flank : GACGTTCACGATGTACAATAACGCCATCTTCATTTTCTTTTTCATTATTTTCAGTGTGAGCTGCAGCTATAGTTAAAATGTTGTGGTCAAAATCAACGTGAATGTCTGATTTTGCCATACCTGGAAGTTCAGCGCTTACAACATATGCATCTTCACGTTCAGAAATATCTGTTTTAAAAGCTTGAGATTGCATTAAACCTTGCCCAAAATCTTTAAAAAGATCACTGGGATTCATATCAAAAATAGAATGATTAAATGGTTTTAATTGGAATGCCATAAAGCATCGCTCCTTCATATTTTAGAATGTCGCAAATATCAAGAAACTGAAATGGTAAAGATCACATCTAATCCTTTACAATCTTATTATACGACAAAGGTCAAAAATAGTCAAGGTCAAAGTATTGTGGTGGATGTAAATTAAAATTTATCCAAAATACGTAAAGATCAGTGATATCAATGGATTAGACAAACTTAAAAGTTATAGTATACTGTAGCTAGAG # Right flank : ATGTGCTATTTATGAAATATCTATATAAGCGATCCATTTATTTTAGCGATAACCTCATAAAATTGTTTAACTCAATGAAATAAATGTTATTTAGGTGGAAGTTATAACACTCACTCTATAAAAAATATCAGAAAATTCTTGACTCAAATGGATCTTATGATAAAATAAATTTACAAGTACTTATTTGTGCTTATACCTAAAATTACAGAATCTACTAAAACAAGACTATATGTCGTGTTTATCCCACTAATTTATTAGTGGGAATTTTTTTGTTCTTCTTTTATAATAGTATTTAAAAGGGAGGGCAATGTATAAATGAATAATTATATACTAGGACTCGATATAGGTATTGCCTCAGTGGGATACGGTATTGTAGATAGTGATACGCGTGAAATTAAAGATGCTGGGGTACGATTGTTTCCAGAAGCGAATGTAGATAATAATGAAGGAAGACGTAGTAAAAGGGGAGCGCGACGTTTAAAAAGAAGACGAATTCATAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //