Array 1 23077-21585 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHRF01000048.1 Streptomyces sp. L-9-10 contig_049, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23076 29 100.0 32 ............................. TCCTGGAGCCTGGTGGCGAGGTCTTCCGTCTG 23015 29 100.0 32 ............................. CCCGCACACCAGGCCCCGCAAGGGGTGCAGGA 22954 29 100.0 32 ............................. CCTGTCGTCCAGGAAGCGGCGGTCCAGGCCGG 22893 29 100.0 32 ............................. GTGTGAGCGATAATCCGTCGGCCCGTTTGGAG 22832 29 100.0 32 ............................. GTACGGCTGTAGGCGTGGTAGTGGTCGCCGTC 22771 29 100.0 32 ............................. AACGGCTGGGGCATCAGCATGAACGCCGACGG 22710 29 100.0 32 ............................. GTGCCCGGCGTAGAGGGCTTTCCAGTGCCAAG 22649 29 100.0 32 ............................. GACACCGTGACCGCCTGGTACGAGCCGAAGAC 22588 29 100.0 32 ............................. TCACATCAGCCCCACCAGCCACGAAAACGCCA 22527 29 100.0 32 ............................. GCCAGGCGATGCACGAACAGCTCGAAGCCGAA 22466 29 100.0 32 ............................. GCCCCGGCGGGCGTCATCGGTTCCCGGCTACG 22405 29 100.0 32 ............................. GAGCTCGCGCCGCAGCACCGCAACCGCGGGTA 22344 29 100.0 31 ............................. CAGTTCACGATCCGGTACTGGGGATGCCGTT 22284 29 100.0 32 ............................. GCGCCGGAGACACCCAGCCCGTACGACGCCTC 22223 29 100.0 32 ............................. ACCCCTCCAGGTGTGCTCCGCCCTGGCCTTCA 22162 29 100.0 32 ............................. GAGCCCGGCCAGGACGAGCGGCGGCATGCGCT 22101 29 96.6 32 ..........................T.. CGTCCGGGCCGAGGACTTCGACGACGCCGGCG 22040 29 100.0 32 ............................. GGCCCGCGCGGCCGCGGTGCGGGCGGATCGGA 21979 29 96.6 32 .......................A..... TGTTCGCTGACATGTATAGCGGGAAGTTCCGG 21918 29 100.0 32 ............................. ACCCGACCGGCCCGCGAAAGAGCAGGTCAGGA 21857 29 100.0 32 ............................. GCCAGTCTGCGGGATGCCGCTCTACGAACCCA 21796 29 96.6 32 ............G................ GAGCAGCCCGTCCGACCACACCGACACATCCG 21735 29 100.0 32 ............................. ACGCCCGCCCGGCTCGCCGCGTACTTCGCCAA 21674 29 96.6 31 ..............T.............. AGTCCATCACCGTGAGGGCGTCGTTGTCGTT T [21647] 21613 29 93.1 0 .C...T....................... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.2 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GGCCAGCCACACGCACAGCAGCCGGGCGTCGCGCGCCCCGCTGGGTAACACCTCGGCGATCAGAGCCCGCACGTTCTCGGGCAGCCAGTTGTCCCACAGCAGCCCGGCCACCGCCGCGCTGTCCGCCATATGCCGCCACAACGGCAGCCACCCCTCAGTGTCCCGATCATGCTTGGCCCACACAGACCGCACCGGTCCCGCGAGCCGGCCCCCAAGCCCCTCACGAGGCTCCTCCCTCTCAACCGTCATGGCAGATGAATACAGGCAAACCAGCAACCAAGACGGCCATATATGAAAAACATCCGCACACGACGCTGTCCCGGATAAAATCCCCGCGATGGTTCAGGGCAACCTCCTACCATCTGCGGTTGCCTTCACCCAACGGACCGTCGCATGCAAGCACAGAGTCCCGCAAATTGACCCCTATGCACTTTTTGCCGAAATTGATGGAACTGCTCGGAAACCACGCCCGCCGTGAGTAACGCAGCAGGTCACGGAGG # Right flank : GCCGAGTCGAACATGACCCCGCCCGGGTGATCGTCTCTTCGATCGCCCTTCGGGAACTCTTCCGCTGGTGCCAGCATTCAGACATTCAATAGCACTCTCAACACCGGCGATAGTGACCCCGCATGCGCGGGGAGCACATATGACTACCAACCAAAAAGGGGCCATCCCTCGAACCGCAAGGGAACATCATCGGATTCATGATGGCAGGTCACGGACCACCGACGCCCAAGAACGCGAGGAGACGTGCTACGCCGAAGGGATGAACCCTGCTGGATTCAGCTTTGAAACCGACCCGAGGCCCTCTCAGGAACTACCCTGCGCGTATGCATTTCCGGGGTTACTACCAACCAAATAGTTCAGATCATGGGGTCCGTCTCGTCAGAGACGACCGCCGATGACTGATCGTCATATCACCTCAGACCTCCGGTCCCGATGTCAGGGACAGAGCCCCAAGCTCCCAAATCGGTGGACGCAACGATGAATTCACCCGGCTCCCCGGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 32778-33603 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHRF01000048.1 Streptomyces sp. L-9-10 contig_049, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 32778 29 100.0 34 ............................. TCCGGCGCGAACGACTCGCTGCCATCGTCGAGTT 32841 29 100.0 33 ............................. ACCAGGTCGTCGGGGTACAGCTCGGCAGGATGC 32903 29 100.0 32 ............................. TGGTGGAGGTCGGGCCGATGACCTGCTGCGGA 32964 29 100.0 32 ............................. GTTCGCGGTGGGGGTGGCGATGGTGAAGGTGT 33025 29 100.0 32 ............................. TCGACCGAAAGGAACCCGAAATGACCGACATA 33086 29 100.0 32 ............................. CGACCGGATGCCTGGTCTGTTTCCGTGAGCCA 33147 29 100.0 32 ............................. ATCGGTGCCCCTGCCATCCACGCACCGTTGTA 33208 29 96.6 32 ............................T CTGACCGCGACCCGCATTTCGATCATTGGAGG 33269 29 100.0 32 ............................. GTAGCTACGAGGCCGACGAGCTCCGCGACGCG 33330 29 100.0 32 ............................. ACGATCGGCTGGGGCCCGCCGCCCGCGTGGCC 33391 29 100.0 32 ............................. CAGGCCCTCGACGACGCGGCCCGCATCCTCGC 33452 29 96.6 32 ...........A................. GGCCCGACTTCCCTGGTGCGGTTGCGCGGGTC 33513 29 89.7 32 ................T.A.........T GCGCTGGACGCGCTCCGCATCGAGGCGTCGGC 33574 29 79.3 0 ....G.T..........A........TGT | C [33577] ========== ====== ====== ====== ============================= ================================== ================== 14 29 97.3 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : GGCCACGAAGTAGCCGCAGGGCGCAATTACGGAGACGCCGACGAGGCGGTCATCTGGTGACCGTGATCGTCCTCACGAACTGTTCCGCCGGCCTACGGGGGTTCCTCACCCGCTGGCTCCTGGAAATCTCCGCCGGTGTTTTCATCGGCAACCCCTCAGCAAGAATCCGCGACCTCCTCTGGGAGGAGGTCGAGCAGTACGCGGGCCAAGGCCGCGCCTTACTTGCCCATACCACCAACAACGAACAGGGTTTCACCTTCCGTACCCACGATCACGCCTGGCAACCCGCCGACCATGAAGGCATCACCTTGATCCGACGCCCGGACGCCAACACCCGCCCGGTAACCGCCGAACCGCAATCCGGCTGGAGCAAAGCGGCCAAACGCCGCCGATTCGGAAGAGGCTGACCCGATCCGACGTCACCTTTGAGGGAAATGTCGAATTTGATGAAAGTGCATCAGAACTGGTTTCCTCTGTGCTGAAACCCCAGGTCACGGAGT # Right flank : TCGGCGTCTGTCGTCGAACGTCTTCAGCCGTCGACGACATCTCCGGGCGGCAGCAGCGCATCGGGCACGACGACTATTGGCCGCTGCTGGCAGCCCTGATGTGTTCCCGACGATCGGCGTGCCAGTGGGATCCGGAGATGAGGCGTCGCCGAGCCCGTTCGTGATGTAACCGCGCATCCGGCCAGTGCCAGCCCGAGAGACGAACAGCCTCTCCACGCCGCACACGTCACCTGACATGCCGCGCAATAGTCGTGATTCCGCTCGTGCATCATTGAGGTGCGCAGTGCGGGGGAGGAAGAAGGCTTCCGGTGAGAGACCGGACCGCTGTTGAGCCCTGGGAGCGGCAGAACGGTGAGTCCCCCCAGGCGTTCGAGGCGTTCGCTGTGTATCGCGATCTGGGCCCGGCGCGGAGTGTCACGAAGGTGGCACGTGAGTTGGATAAATCCCGGGCGTTGGTGGGCCGGTGGTCGCGGCAGTTCGCATGGGTGATGCGGGCGACG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 205946-205673 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHRF01000026.1 Streptomyces sp. L-9-10 contig_027, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 205945 29 100.0 32 ............................. CCCTGGGCCGGCGGCGCGGTCTCCGTCTGGGC 205884 29 100.0 32 ............................. TACATCGGCGACATCCGGAAGGCCGCTGCGCA 205823 29 96.6 32 ............................T TCGTAGCGTGATCTGCATGAGGCGGCGCCGTC 205762 29 100.0 32 ............................. ATGGGCCAGGATTACGGGACCTCGACCGTCTA 205701 29 96.6 0 ..............A.............. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGCTCCCCGCGCAGGCGGGGGTGTTCCG # Left flank : CTCCACCCGGGCATGCTGCAACTCCACCCGCCGCCGCGCCTGGGCGGTGAGCCGGCCGAGTGTGGTCAGCAGGTCGTCGGCGCTCGCCGACCGGACGGGACGACGCCGGGTCATGCACCGCTCCGAGGTACGTCCGTTGGTGGACCGCTGTGAGTTGTTCCTCGCAACGGAGTACAGAGGGGCTCTCGCTCAAGCCTCACCTCCATCATATTTCGAACACGCGGCTTCCGCCGGATGAACCGGACATTCCCGGACATACATACATGCATGACACACACAACGTGCGGCGGAGGCGCGGGGGGACCCTCGCCAGGACGGGGGCTTCGGCTCCGCGCGGGCCGGGTTGGCAGGCCGGCTTGTCGAGCGACCCGATGGGCATTCGGTCCAGCTACGACGACAAGGCAGCCCCACCGACCACATGCCTCTGACACCATGAAGGCGTGAGGACGAGCAATGGTCAAGCAACGACAAAGCCCGCCTAACGCCGCAGGTCGAGAAGG # Right flank : ACGGACGCGAACATGGGTCGTTGGCGGTTCCGCCCGCGCCCAGGAGGGTGGGGGGGATCGCCGCCGAGGCGGGCTCCAGGGCGGGCAGGGCGCGGCGGGCACGGTGCGTCGCGGCGGACGGGAGGGCCGCGCGGACGAGCTGGGCCGCGCGGAGCCAGGGCTGGGCGTAGATGTGGCGGGCGCGGCGTTCGATGCCGGTGGCGAGGCGGTCCACGGCAGGGGCCAGCGGGTAGGTGCGGTTGGCGGGCCAGCGCATACGGGAGCGCAGCTCGCGGAGCGTGGAGTCCTGGTCGGCGCCCCGGACCATGTCGGTGTCGGTCCAGGTGAGATAACCGACGCCGACCCCCACCCCGTGGTGCGCCAGCTCGGTGCGGAGGGTGTGCGCGAAGGACTCCACCCCCGCCTTCGACGCGCAGTAGGCCGTCATCATCGGCGCGGGGGCGAGGGCCGCGAGCGAGGCGACCTGGAGGTAGTAGCCGCGGGAATCCAGCAGGGCGGGG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 37418-37084 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHRF01000074.1 Streptomyces sp. L-9-10 contig_076, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 37417 29 100.0 32 ............................. CCTTCGACCGTCACATCCAGTCCTGTGACGGA 37356 29 93.1 32 ...C........C................ ACGACTGGACCGTCCGCTACGCCGCCTCCGGC 37295 29 96.6 32 ............C................ CAGATTGTTGCGGACTGTCGCCGGCTGGACGT 37234 29 100.0 32 ............................. AGCTTTCCCAGGTCCACCCCGTAGACGGCGAC 37173 29 89.7 32 ............C.A.........C.... GCTCAAGACGCCGGACAGGCGTACGTCGATCA 37112 29 86.2 0 ............CG..........G...C | ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.3 32 GTGGTCCCCGCGTAGGCGGGGGTGTTCCG # Left flank : AAGTGGAAGCGGCCCAGTGACTCAGAAGGCGCCCGCCTACACGGCACCGGCGTGCCGCATCGAGGAGCACGCGGAATGCCACGGCCCGAGCGAGACCCGCCTCCCCTGGCAGTCGCGCACGGGCCCGGCGATCGAAACGCTCCGCTGCGACTGCCCCTGCCACGCCACCACCACCACCACCCACCGCCACTTACACGCGGCCCCGGGCCCAGCCCCAGCCCAGGCCCGCGTCCCAGTGCCGACGCCGACGCCGGACACATTCCTGAGCTGCGGCTGACGCGAAGGCGCGAGGGGTTCGGCTCGGCGCGGCCGGCAGCCGTCCAAATCCCCTGGTTGGACGGGTTGGTTGGCCGGCTTGTCAAGCGATCCGGTGGGCAGTCGGTCCAGCGATGGCGACAAGGCAGCCCCACCGACCACACGCCTCTGACACCATGAAGGCGTGAGAACGACCCATGGTCAAGCAACGGCAAAGCCCCTCTAACGCCGCAGGTCGAAAAGGG # Right flank : GTTGCCGGCGGCGTAGGGCGATCAGTGGCCGGGCCTTGGGCGGCCGCTGGCTCGGGGGCGGCGGCAACCTTGCCCCGTGGTGGAACGCGTCGGCTGGTGCGGAGAAGAAGCCGTCCGAAAGGATGGCTTCTGTGTGCCCCGCCACACAGGCGCCTCTTCGCGCTCGTAGGCGCAGTTCCCGCCGCCCCGTGCCCCCTCTAAGGTCCGTCCGCTCTCGGTCGGTCCTGGGACGGCGGAGCGCCCCTGCCCGGCTGGGACGGGAGGGGCGCTCAAGTGCAGGCTCGTAGGGGACTCCCCTGCCTGCGGGTGGTAGGCCGTGTGGGACTCGAACCCACAACCAACGGATTAAAAGTCCGCTGCTCTGCCAATTGAGCTAACGGCCCTCGGCACAACACCCACGAGCATAGCCCGCCGTCGGCCCTGCGCCGATCGGGTATCCCCACGTGGGTATGTCGCGCGTCGGCGTGGGTGTCTGCGCGGTTCGCGGGGGTGGTGTCGGC # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGTAGGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGGTGTTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //