Array 1 165364-163321 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYVG01000011.1 Salmonella enterica strain BCW_6295 NODE_11_length_182260_cov_3.27782, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 165363 29 100.0 32 ............................. CCCTCTTTCGCCGCTACCGCAGCTAACAAGAT 165302 29 100.0 32 ............................. ATTTTCATCGCCAGACCAGGATCGGTGGGGTT 165241 29 100.0 32 ............................. AAAAATTCGGCGCCAGCATCGCTGCGGATACT 165180 29 100.0 32 ............................. GCTGGCGGTGTACTCATCGCTTTGCACGGTTC 165119 29 100.0 32 ............................. GAACGCACGTCGCACAATACGACGGTTAAAAA 165058 29 100.0 32 ............................. CGCGCCACGGGTAAGACCTGGGAAGAGACGAT 164997 29 100.0 32 ............................. CTCAAGTAAACGTTAGCACCACGAATATAACC 164936 29 100.0 32 ............................. GGCATTGCGTGGTATCGGGTTTGCTAATATTT 164875 29 100.0 32 ............................. GCGCCCGTCGGGGGAAGCAAGGCGGACGGGAC 164814 29 100.0 32 ............................. TAGTCCATAGCCTCAGCCCGGCTTGTCATCCT 164753 29 100.0 32 ............................. ATTACGAGACATTGTGGAAATCCATCTACGGC 164692 29 100.0 32 ............................. AGGCGTGCATCAATTGCTATAAAGCCGTAGTC 164631 29 100.0 32 ............................. ACTGGTTGAGAAGATCCGCCGCAGAATCAGCG 164570 29 100.0 32 ............................. ATCACATCACGCAGATATTATCTCATTACAGC 164509 29 100.0 32 ............................. CGCCTACGCCTGGGAGCTAATCCCCGACAGCA 164448 29 100.0 32 ............................. CCCGTTCCACGGCGAGAAAACCCCGTCCTGCG 164387 29 100.0 32 ............................. CCGTTGACGGCGAGCGCAGACCTCGGAAATAA 164326 29 96.6 32 ............................T TGCCATAGAAGAATCTGACCCTGATAACTGGC 164265 29 100.0 32 ............................. GCGTCCTCGCCAGCGTCAGCCGGGTAATACAA 164204 29 100.0 32 ............................. GCCTGCGTGAAAAACAGGTTCATCAGGATGCC 164143 29 100.0 32 ............................. CTCCTTGAGCAGGGGAAACCCTGCCTTTTCCA 164082 29 100.0 32 ............................. GGCTGAGAAGATCGGCGGGCAAACTGCCTATG 164021 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 163960 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 163899 29 100.0 32 ............................. GTGACAACGGTCCCGGCGCTGGAAAAGGTGAA 163838 29 100.0 32 ............................. CCAGATAGAGGCTTTAACATGAAATCAATTAC 163777 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 163716 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 163655 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 163594 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 163533 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 163472 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 163411 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 163350 29 96.6 0 A............................ | A [163323] ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGTGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182210-181632 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYVG01000011.1 Salmonella enterica strain BCW_6295 NODE_11_length_182260_cov_3.27782, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 182209 29 96.6 32 ................A............ TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 182148 29 100.0 32 ............................. GCCGGACTCAACGGCGAGAACGTCGGGGACTT 182087 29 100.0 32 ............................. CAGACTGTGGATCTCAATCGGCCCGGGCAACT 182026 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 181965 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 181904 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 181843 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 181782 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 181720 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 181659 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================= ================== 10 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCCAGCGGGGATAAACCGATTCTTGACTGGCTCGATACGCTCGCATCCA # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 375-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYVG01000017.1 Salmonella enterica strain BCW_6295 NODE_17_length_95018_cov_3.29294, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 374 29 100.0 32 ............................. GTTGCACGCATTCCAGTGTGGTTTAAAAAACA 313 29 100.0 32 ............................. AACAACCCGCTAGTATTACAACGACTAAAAGT 252 29 100.0 32 ............................. CGGGCGTACACCAGAACGGCTATTCAGGCACG 191 29 100.0 32 ............................. GCGCAGTATCAGGGAACGGCCGTTATTACGGT 130 29 100.0 32 ............................. GAGCGTTTAAAAATGCTCGATACGCTCCAGCA 69 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : GATTCTTGACTGGCTCGATACGCTCGCATCCATGTGTTCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //