Array 1 626789-627490 **** Predicted by CRISPRDetect 2.4 *** >NZ_VAWG01000001.1 Paenibacillus pinistramenti strain ASL46 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 626789 32 100.0 35 ................................ TCCCATGCCGTCCTGCGTGGGGTCGATATAAGCCT 626856 32 100.0 35 ................................ TAAGGTTAGCAGGAACACGATAAGCAAAGCTTGCT 626923 32 100.0 33 ................................ TTTTTCTCCCCTTGCTTATCCCAGTGCCATGCG 626988 32 100.0 38 ................................ TGCAGTAAACAGCGATGTGTGAAATGAGGTGACCTTGT 627058 32 100.0 34 ................................ ATGCCGCCGATGATTCGGCTGGCGGTTACCCCGG 627124 32 100.0 34 ................................ TAATGTGATGATGGATACGGCCATTATTTTCAGC 627190 32 100.0 35 ................................ ATTGTGGTTTACCGTAAAGAATCCCATTTGGAAAA 627257 32 100.0 36 ................................ CTGCCGCCCAAGCACGCAGCTCGGACAGTGTACCGT 627325 32 90.6 34 .........CG.A................... ACGAAAGGAGATTCCCCAATGGTTACAAGTCTAT G [627339] 627392 32 90.6 33 .........CG.A................... CGGAAAAATAGTCTGGCACTGTTGAAGTCAAAT G [627406] 627458 32 87.5 0 .........CG.A.....A............. | G [627472] ========== ====== ====== ====== ================================ ====================================== ================== 11 32 97.2 35 GTCGCACTCTACGTGAGTGCGTGGATTGAAAT # Left flank : CGCCTCCTACACAAAAGCAATCAAAGCGCTAGAAGGACAGGGTTATACAGAAACAGAGCAAGAGCAAATGGCCGCGGTCATGGCGGAGCTCAACCTCCATTACTTTGCAGGCACCATGGATACGGTGGATCCCGGAGTGCTTAAATCAGCAGGCATGCAGTTATGGCAAAACGCGGAGCCGCAATTTATAAAAAATTACGTCCTCAGCATGGGGAGCAAAACGACAGGAAACAATTCACTCACAGTGAATCTGTCCAGCGGAGCCGCGAGATAACAGTTAAGGCAATAAATACATCACGCTTCAAACGCGGCCAGCTTGGTGCGAATGAGAAGCTCACATAAATTCCCCGGGGTATTCGCACCTCAAATCTTGTCGAAAAATACGAGAAACAACCCTTTTAGGCGTAAATCCTAGATTATTCGATGCTAATTCCTTATGATAGATAATGAATATGTCTCTAACTCTTCTGTTTCTAAGATGAATGCGGGGCATTTTCGCT # Right flank : TGCCCTAAGGTGCCTAACGTCATACTCAACCAGGCGTCGCACTCCACATGGAGTGCGACAATTTTATGACTTTTTACATAAATACTGAGATCTGCATGCTTGGCTTGTGTTAAAGTTGGTCATGATATAACCTTATACAAAAGCTGCGCCTTCAAAGCTCAATTTTTTTGATATTAAACAGCTCTAGTGATTGATGAAGCCATAAAGATATGTTTGGATGTAAGTAGTTCTCGAAATACTGTAAGCCTTTTTTTGGAAAAATGGTGCAACTTTATTCCCCGCCATACGTATTTTTACAGAAGCGATTAAGCAGAATGGTATAGAAAGTAGAGGGATCAAGATTGGAAGACAAGAAGAAACCCGCCTATGTTGTGGGCAGCAAAACCTATACCGCAGTTGCCATCAATGCGGCAGCTAAAGCCGGTGAATGGATTAAGAGCCGCGTGGGCATTTATAAACAGCTGGATACCAAAACATCTCCGCAGGACCTTGTAACCGAG # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCCGCATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.60,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1592-25 **** Predicted by CRISPRDetect 2.4 *** >NZ_VAWG01000028.1 Paenibacillus pinistramenti strain ASL46 28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1591 32 100.0 34 ................................ ATCTCGCCCGCCGAACAGGTAGAATACGTTCGTT 1525 32 100.0 35 ................................ TCATATCAGAAAAGATATGTTTCAATCCACATCCC 1458 32 100.0 35 ................................ TTTTTGTCGCAGCCGCTGATCAGCATGTATGAGGC 1391 32 100.0 35 ................................ TTCCGGTATTCCGGAAACCGTCGCTTCTGCCCCCA 1324 32 100.0 34 ................................ TTTTTGGCCATTATCTCACCTCTACTTCCGGTTT 1258 32 100.0 33 ................................ TAAATTAATCCTTGCATTAGTCATGATGACTTA 1193 32 100.0 34 ................................ GCATCATAGCTGATGTCGTTCTGGGCGACCGTCT 1127 32 100.0 36 ................................ TATCGTCCAGTTACGACGCAATTCGCCGGTGTCGAC 1059 32 100.0 36 ................................ TTGGATCCGACGCAGCTTGTGAATATGGACTCCGTC 991 32 100.0 37 ................................ TGTTGCGGATTTAAATTTCACTCCATACCTGTCAAAG 922 32 100.0 33 ................................ CGATAACGTTATAGCGATTAACAATGATGCCGT 857 32 100.0 34 ................................ TTCGTCGATAATCTGCTCATAGGCCCGGTCAATC 791 32 100.0 36 ................................ GTCCGTGATGTCCTCGAAATTAAATCCGAGGATTTC 723 32 100.0 34 ................................ TGGATCGAACGGTTACTATTATACTCCAATTGAT 657 32 100.0 34 ................................ CTGCCTCTACCTGTTGCATTTGATAATCCCAATC 591 32 100.0 34 ................................ GCTGTCTTGTCCGCGTGCAAATCTTCCTGATCGA 525 32 100.0 37 ................................ GCCTATACTGTTGCATCAATTCTTCAAGAGGAATAAC 456 32 100.0 36 ................................ AGGAGAAGATCGGGCCAAAGCTTTTGGTAGATCACT 388 32 100.0 34 ................................ TCGGCGTCGGAAATGTAACGGTAACCGTTATTTG 322 32 100.0 35 ................................ TCCAAATAGGCACGTTTTGTGCTACTCAGAACCGG 255 32 100.0 35 ................................ TTCCTTGGAACCGATCTTAATTTAGTCCACGCAGC 188 32 100.0 35 ................................ CTCAGCTGATCGAAACTGCGCTTAAGGTACAGGAC 121 32 100.0 33 ................................ ATTGATGACGTCTATAGCGGCGGTAAGGCCACA 56 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 24 32 100.0 35 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : ATATCAAGGGCTTAGGTTAATGCGAAATGCTCGAGTAAGTATGCGTACTGAAGAGGATTCTCTCTGAAATCATCTGGGCAAGTTCCTCGTATCATTCGGAAAGGATGATTCCCTGGATTCGCTCGGCTTCCGGATCCTCGGGTTGTAGGAATTCATCTCCAATCCATAACTTGATTTTGTCGCCTGCAGTACTGTCCCTTATGTTTAACAACAACATGAGTTCCTTTTTTGATTTCATCCTGTTTAAAGATTAATTGACTAAAGACCTACTGCTGCTGGATGTCCAATTTCCGAATCAGTTCAGGCTCAACTCGAAGAAGTACGAATGGGAAGCTCACATGAATTCCCTGGGGGATTCGCACCTCAAATCTTGTCGAATCAAAGGTGAAATGAGAGTCATGGACGTAAATCATAGCTTCTTTGATGCTGATTCTTTATGATAAATTTTGAAATTGACCCCAATTGTTCTGTTGCTTAGATGAATGAGGGGCATTTTCGCA # Right flank : TCTCAGCTGATCGAAACTGCGCTTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 27-457 **** Predicted by CRISPRDetect 2.4 *** >NZ_VAWG01000027.1 Paenibacillus pinistramenti strain ASL46 27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 27 32 100.0 35 ................................ AGATCGAAAATAGCTTGTCTCTATCGGATGAATTT 94 32 100.0 34 ................................ CAGGTACGACCTTCGTACACCTCGTAGGAGATCA 160 32 100.0 34 ................................ AATTACATGCAGAGGGGTAAACGAAAATGAGTAT 226 32 100.0 34 ................................ CGCAGATTAATCAGTGTCTCAGCATGTTGCAAAA 292 32 100.0 35 ................................ AGTTTGGTATACCTGAATCGGTGTGACCAGTATCC 359 32 100.0 35 ................................ CATAAGACAATAAAACTTCCTGAAATTTGGAATTC 426 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 7 32 100.0 35 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : ATACATTCAGCCAATATGGGCAAGCTG # Right flank : TAGTTTAGGATGTTCTTCAGGATGTTGTATACCAAATCGGCTGGCGACCGGGAATGCCAATATTAGCCGTATGGGGGACTTTTCCTTTGATGGTGAAGCAGCAGAAGGGGCTAAGTGGTTGGAGCTGGGAAATGCTCCAGGATTTGACCACCATTCGGAAGCATATAAACACGTACCGACAAAAGGGGGCGGTTGAACGTAATTGAATTGAGTTCCTTTCAATTTTTACCAAATTGGTACTGTGCGGATACTGTCTTCGTTCGGGGATCATACGGGAACGCGCTAAGACGTTGGAACCATTGCAGCGGCTAAACCTCGGGCTGTGTGCTTGATAGCGGTCGTTCCTATTGAATAGAGATGGATCATTTGAAGTTCATTCTTACAGGCTAATTAGTTACATGATGCAAACAGACTTAAGCAAAATTAAAGTGTTGTACTATGGTATACTCGAACTATATATCTAAATGAGGTGTTTGTATAAATGAAGAATCTTACGCAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 25290-25127 **** Predicted by CRISPRDetect 2.4 *** >NZ_VAWG01000027.1 Paenibacillus pinistramenti strain ASL46 27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 25289 32 100.0 33 ................................ CCACGGCCTGATGCGCTGGTCGAGGGGCGGCCG 25224 32 100.0 34 ................................ GAGCTTCCGGCTACCGAAGATCTTTGTCGGCGAG 25158 32 59.4 0 ...............C..CGAATATAAA..GA | ========== ====== ====== ====== ================================ ================================== ================== 3 32 86.5 34 GTCGCACTCTACGTGAGTGCGTGGATTGAAAT # Left flank : GCTTCATAGTAAAAGGTACTTCTTGCGATTTGCAGGACGTCACACATTGCTGATACCGAGTATTTATCACGATTGCTTTGGATAATAGCTACTTTCGTCCCATGATCAGCGCGGCTTGCTTTAAAATATCGATCTCCATCTTCAAACGCTGGTTCTCTTTTCGCAAGGCCACCAGCTCGTTTTCCTCTGAAGAACGATTGTCTTTCTCCTTGAAGGAACCTGACGTCTGAGCTTGCTTGATCCAACGATCTAAAGCTGAAGCTGTGAGGCCGTATTCCTCCACAATTGCTGCTCTGGATTTCCCGTTCTCATAGAGCCCAACCATTTGCTTCTTAAATTCAGAGGTGAAGGTTCGCCGTTGTTGTTTTGGCATTGTAGAGATCCGCTCCTTAGCATGATAGGTTTATTCTACAAGCCCTTATTTTTTCTGTCCAACTAAGTGTAGACGATTCAGTGGATTGAAATATGAGCAGATACATCCATACGGCTAGGTAGTCAGC # Right flank : TCGCAGACCAGCCTGCGATCTTTCTGATAAGATGGCTCAAAGTAAGGATTGGGTAGCCGGACCCTCCTTAACTTCTTCTTATAAAACTAATGATACAGCTTCATGAGCGCCCTTTTTCGCAATCCGTAAAACATGACTCCGACTTATTCTAAGCTCCTAGATGATCTCTCGCTGGGTCTGCTGCATCAGGATTTCGGGTTTAATACAAGGCGCGGCAAACATGGCCAGCTTAGTCCCTTTGCCGAACCGGTAGCTCTCTATCGCTTTAATCAAGATGACTCCAAAATTTGGCCAATGGCAGTCACAATTTCTTGGGCTTGCTGCCCCTCCGCTATAACTGTCACTGGTTCTCCGCAACGAACTCCCAGTTTCAAAAGACTCATCATACTTAGTGGATTGGCCGATTGATCACCTTTGATGATTTGAACAGAGCATGATGCTTGCCTGCATATTTCAATAATACGGCTGGCAGGACGAAAATGCAGCCCCTCCACATTTGC # Questionable array : NO Score: 7.69 # Score Detail : 1:0, 2:3, 3:3, 4:0.33, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 30141-28719 **** Predicted by CRISPRDetect 2.4 *** >NZ_VAWG01000027.1 Paenibacillus pinistramenti strain ASL46 27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================================================================ ================== 30140 32 100.0 35 ................................ CAATTTTCGTAACCGTTGTAATCACCACTTTCTTC 30073 32 100.0 36 ................................ AGTTGTATCAACAAGAACACCCGCAGTCATGGTCTT 30005 32 100.0 34 ................................ CACGTTAACCGGGACAAACGAACGGTTACAGCGC 29939 32 100.0 34 ................................ AGATGTGCATCAACATTATTGCGACCGAGATCAG 29873 32 100.0 96 ................................ GCTAGTTTCGGTATAGGAGGGAGATTGAATCCGGTCGCACTCTACGTGACGTGGATTGAAATTAAAGCCTCCAAATAGCGAAGGTTCCCCTTGCTC 29745 32 100.0 34 ................................ TTGGGTCAGAGTCACTTGTTTGGGCTTCCCGCCG 29679 32 100.0 34 ................................ AGGATCCTGTATGGCATCGTAGCTTTCACCTTTA 29613 32 100.0 36 ................................ ATTTTTTTGGGCTGGGCCATCTGGGCCAGCACTTTA 29545 32 100.0 34 ................................ AATTGTTCCCATTAATTCATCTATTACGTATTCA 29479 32 100.0 35 ................................ AAAAATAAAGAGCAATTCCTCGCGACTCGAACTAA 29412 32 100.0 33 ................................ GATTTGAGTCCAGGAGAAGCCGAACATTTCACC 29347 32 100.0 33 ................................ TGAAGATTGAGCCTGATGTGAGCTATGACTGGT 29282 32 100.0 37 ................................ ACCATTTCAGCAGTCCCGACCTTGCCGTTTCTGTTCT 29213 32 100.0 34 ................................ GACCAGACGCGTCAGGTCACCCATGGTCGCTTGA 29147 32 100.0 33 ................................ CCAAAAAGCTGCTCCATCGCGGTGACTACGGAT 29082 32 100.0 35 ................................ ACCGGTTACCTGCCGGATGTTAACGATGGCATCTG 29015 32 100.0 34 ................................ GCACACATGTCCGAAGAGATGGCGGCGGCAACCT 28949 32 100.0 33 ................................ GAGCAGATTAACGGTGGACTCGAAGAGACCTGC 28884 32 100.0 35 ................................ CTGCTAATGTGGCTGGTTGGGTTGTCGCGAAGGTC 28817 32 100.0 35 ................................ ACTGCTCAAGGCGCGCGGCTGGGGCGTTGACCGGC 28750 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================================================================================ ================== 21 32 100.0 38 GTCGCACTCTACGTGAGTGCGTGGATTGAAAT # Left flank : TTGAAATAAAATGATTATCTTACCTTTAACGGAACTGTGAT # Right flank : CAAAGCTTGATTTCCGATTCGTTCGGCGCGGTATCCACAAAGATCTGCTCATTAAGGAAAAGTGCATATGAAGGCTAATCAAAGAGGCTGTGGACTCAAAAACCGGAGGGATTTCTTTTTGTTTAAGTCCTTCTCTGCAGAATAGTAAACAAAAATTCGTTGAATCAACGGCTATAACTTATAACTATGATACTGTTCAAGTGCTGTCTGAAGTGATAAGCTCTATGGTCCTCCCTTAGTTTTTTTCTTAGTCTACAACATCTTTCCTCGTCTAACACTCTTTTTAAAATAAATCCCCAAATAATACAACAATTTACATAAAATTTTATATATTGTAAGGTTAGTTTAAATAAATGGTAGACTATTCCACAAGGGAGAGGTGTAAAGTTGTGAGTCATAAGAAAAAGTTTATTGCCTTCTTTATGATTGCTGTAATCTCAGTCTTCTCTGTTAGTCCAAGTCTAAGTGCTCATGAAATGTATTATTCCGGATCAGCCCCT # Questionable array : NO Score: 9.01 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 14-1380 **** Predicted by CRISPRDetect 2.4 *** >NZ_VAWG01000033.1 Paenibacillus pinistramenti strain ASL46 33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 14 32 100.0 34 ................................ GCCCAGGCGTCAACGGCGTTCCAAAAATCGGTTA 80 32 100.0 34 ................................ TCCGTCCCTCAAACCAATCCCCCTACCTGAACCC 146 32 100.0 33 ................................ CACGATCCTACTTAACATCGACGGGATTTTAAT 211 32 100.0 34 ................................ CCCATTGCCCAAGAAATCACCGGATTCCCATCAT 277 32 100.0 34 ................................ AAGCTGAAAGATCTGATGGGTAAAGAACCCGCCT 343 32 100.0 36 ................................ TTTTCCGACGTGACCCATGTACGAGAGTAACTCCTG 411 32 100.0 36 ................................ GTACCTTTTTCCTTCCGGTGGATGGTGATGGTGGTT 479 32 100.0 35 ................................ GTATTAGGCGACCAGGCGAGCAACGAGTGTAAATC 546 32 96.9 37 ..............A................. TTATCGAAACAGAATCCCAAGAGCAAAGCGAATTTGG 615 32 100.0 33 ................................ TGGATGCTGGTCAAATAGTTGTTCGTTCTCAGT 680 32 100.0 35 ................................ GTATTTGCCCATAACGATGGACGCTCGTGGCTATC 747 32 100.0 34 ................................ GATTTTTAACGTAACCGGAACCGGTCAAGGGGCA 813 32 100.0 36 ................................ CATTCTGGCGGCCATCAACTCGGAGGAGTACGGGAC 881 32 100.0 35 ................................ ATCAAGCACCGCTATAACTATCAAATGGGGTTTAC 948 32 100.0 36 ................................ GTTTATGCACGATATACAACATTATGCACGAATCAC 1016 32 100.0 34 ................................ TCCACAGCGAAGGAAACAAGACAAACTGGACAAC 1082 32 100.0 34 ................................ AATAGAGTCACCTGGTTTGAACTGGCCGGTGAAC 1148 32 100.0 35 ................................ TTCCCACCCTCCAGCAGCAATGTATCTCCAACGGA 1215 32 100.0 35 ................................ TTCTCCACATGACCGGTTACTCTACCGTAGCGGTC 1282 32 100.0 35 ................................ CTTATCCTCCGACTTCGGTGGCACAACAAGCCGGC 1349 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 21 32 99.9 35 GTCGCACTCTACGTGAGTGCGTGGATTGAAAT # Left flank : TCCCTCCCCTTCCG # Right flank : GACATTACTATATGTGGCCTTGGACAGGTCATTTGTCGCACTCTACGTGAGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.60,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1857-8 **** Predicted by CRISPRDetect 2.4 *** >NZ_VAWG01000007.1 Paenibacillus pinistramenti strain ASL46 7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1856 33 100.0 34 ................................. CTTGCGGCGATTGCTTGGCATACAAGCACTGATC 1789 33 100.0 33 ................................. TGGCCGGTGGATGCGCGGCCGGAATTTGCAGCC 1723 33 100.0 34 ................................. ATTCACCTGGACATTATCATTTTAATATTGTCAA 1656 33 100.0 33 ................................. AATGCTTTTACCTCTAAAAATGATTGGTCTCAT 1590 33 100.0 34 ................................. TTTTTCTCCCCTTGCTTATCCCAGTGCCATGCGA 1523 33 100.0 33 ................................. GATTTTTACCTTATGCGGCAGCTGCGGAAAAGA 1457 33 100.0 34 ................................. AGAAAGCTTGGGAGGACTTTAATCCAGGCAAAAC 1390 33 100.0 35 ................................. GGCTTGTATTTATAACCCTAACCGGTGCTTTTCGT 1322 33 100.0 33 ................................. ATTCTGGGCATAGGTTAACTGCATGTTATCAAC 1256 33 100.0 33 ................................. AGCCAGATGTTCGCCTCGTCAATAACGGACTCG 1190 33 100.0 34 ................................. CTCGATCCGCGACGCATTTTTAATCGTGGGGGTC 1123 33 100.0 35 ................................. AGCAGAGGAAGCCCAGATTATAAAAAAGAATGCAA 1055 33 100.0 36 ................................. ATGCGGATAGCAAAATGGCCTGACGGTGCTACCAAC 986 33 100.0 36 ................................. CGCTGGACTTATTGTAGCTGGTGATGTGCTCAGCGA 917 33 100.0 33 ................................. ATCGGGGGCATTTGTTGGCCAGCAATACGCGAT 851 33 100.0 34 ................................. AGCATCCGTTTAAGCGGAACGATCACGTTACGCC 784 33 100.0 36 ................................. GTCGATTTTGCCGCCCACTTCTCGCTGGTGACGGAT 715 33 100.0 33 ................................. CGAAAGGCATATTGGCAGGTTGGCCGGAAAAAT 649 33 100.0 34 ................................. CTTCAAAGTTTACTGTCATGATTATTATCTCCTT 582 33 100.0 35 ................................. TCACATCGATCCGCCGCTGCGTAATCCCGCCTTTT 514 33 100.0 35 ................................. TTAGCTCCTGGTGTGAAGTACCGGTCCCGATAACC 446 33 100.0 35 ................................. TTGACTAAAGGGGGACAGGCAGATGGCTGTTATTT 378 33 100.0 34 ................................. TACCCCTTCTTCCCCTTTAAGCGGAGGGCTGTAT 311 33 100.0 36 ................................. GCATCAGCGCCTTGTCCCTGACTATCCGTTCATGCA 242 33 100.0 36 ................................. TTCTTTACTTATAGCGTTCTCTAATCTTGCAATAGA 173 33 100.0 33 ................................. TCTTGCCATCGAGCACCAAAAAACTGGAAAAAG 107 33 100.0 34 ................................. CATGTATTCAAAAACTAACTCACGTTTATAGATA 40 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= ==================================== ================== 28 33 99.9 34 GTCGCACTCCGCATGGAGTGCGTGGATTGAAAT # Left flank : AGTAGGTGATTTACAATGCTGGTCTTGATTACGTATGATGTCAGTACAACAAGCAGAGAAGGCAGAAGACGGCTCAGCCAGGTGTCCAAGAAATGTTTGAATTACGGTCAAAGAGTGCAAAATTCTGTCTTTGAATGTATTCTGGACGCTACTGAATTCCGCCGTCTCAGGTTTGAACTTGAAGCTATCATCGACGAAACCACAGATAGCATACGCTACTATAAATTAGGTGATAAATACAAAACCAAAGTTGAACATGTGGGTGCAAAAAGCTCGTATGATATGGAAGGCCCTCTAATTCTATAAGAGAAAAATCTGGTGCGAATGTGAAGCTCCCATGATTTCTCCGGTTCATTCGCACCTCAGAATTTGTCGGAATAAACCGAATCGTATGAGGGATACAAGTAAAAAAAGTACAATCTCATATGTAATAAGTATGGATTATAACGAAAATATAGGAGAACGATCTTATTAATGGATTGATTCGAGCTATTTTCGCT # Right flank : AGGCGGTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.00,-6.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //