Array 1 23571-23334 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCFQ01000019.1 Helcococcus ovis strain KG-39 NODE_19_length_34975_cov_27.068698, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================= ================== 23570 36 100.0 30 .................................... GACAATAAATGTATTTATAAGATAGAGGGT 23504 36 100.0 33 .................................... AAAATATTATTCTTGGAATAATAGATGAGTGGT 23435 36 100.0 30 .................................... CAACAAGCAATAAGAATGATGGCGATAATG 23369 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================= ================== 4 36 100.0 31 GTTTGAGTATGATGTAATTTCGTATAGGTATTAACC # Left flank : TTTTCATAATACTCTTTTATTTCTTGTACATTCTCATAAAATGTTTTTCATTCGAACTGTTAGTAAGAAAATTATTCTTAGCATATACACCTGGTATAGTAAAACTTAAGGTAAATATAAGCACACTTAAAAACATAGCTATTTTCTTTTTTAATTTTGTAATATTATTCTTCCTGTTTTTTTGTTTTTATACTTATATATTATGATACTTTATTATATATATCAACGTTTTCTTATTCACTATATAATTTAAAGTAAATACACCCTTATAGGATAGAGACTGAAGGTCGAAAATCCATAAGGGTGTATTTGTGCTATTGCAAAGAGCTAGTAAATAATATATACTTTATTTACTAAAAAAAAGGAGTTTAGGACTATGGCAAATGTATATTCAAGACAAACAAAAATATCAAATGTAGTTGGTAGAAGTGATTACATTTCAAATGAAAAAAGACAAGAGCATATAGTCTTACATTCCAAAAGTAGTGTCTTTGATTGGA # Right flank : TAATAAGATAACTAAAGGAGAAAGTCCGATAGAAATAGTAAAAGCAACTCACCCAGTTGTTTCGGAATTAACTACACAGGTAGTAATCAATAGTATTCCTGAAGAGGAACTATTAGAAATAAATGTAGAGGGGGGATGGTATGAAGTGCCAAAAAACGTGAAGATACAGGAATTAGCATTTGTATTGGCATCACACCTAGATGCCATATTGAGAATTAAGAGTGAGCGTATGAAAGAGAGTAGACAATTTACTACTGTAATGAATACATTAGTTAATAGGTAGTCTGAAATCTGGAGGCACCAAACAAAACAGAATGGATAGAAAATAACATAGAATATAAGAAGAGGATAAAATTATTATGTTTAATAAAATTGAAAGAAAACCAAAATGTGGAATTAGAAAATTAAAAGTAGGATTTGTGAGTTGCTTATTAGCATTTGGAATCTTAACAAGTGTAGGAAGTCCTTTAATAGGAAATACAGTAGTAGAGGCAAAAGCA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGTATGATGTAATTTCGTATAGGTATTAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 19494-16223 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCFQ01000031.1 Helcococcus ovis strain KG-39 NODE_31_length_24508_cov_35.509659, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 19493 36 100.0 30 .................................... TATAAATGGAGTTTAATCAAAGGGGCGGAT 19427 36 100.0 30 .................................... CTATACACAATTCAGACAACAATACTCTTC 19361 36 100.0 30 .................................... AAAGACCCTATCATAAGCCAATAGCCCACC 19295 36 100.0 31 .................................... AATTTATAGGAGCACATTCAATCACCGCAAA 19228 36 100.0 30 .................................... CAGATTATTCCGGGGTGGAAAGACGCAACA 19162 36 100.0 30 .................................... GAGCTTAATCAAGTAACACGCACGGCGAGT 19096 36 100.0 30 .................................... CTTGTGGTATTAACAAGCTCTCTATTAGTA 19030 36 100.0 30 .................................... CTGTTGTAACACTTTCAATATGATACTTAG 18964 36 100.0 30 .................................... AAGGAGATTGGATAACAACTAAAAATTACC 18898 36 100.0 30 .................................... AAAACAAGTGCTTTATGGTATGCTTCATGG 18832 36 100.0 30 .................................... TTTGATTATGAAATTATGTGTGATAATCAT 18766 36 100.0 30 .................................... ATGAATATAGAAAATCCCCCTTCTTCCCAT 18700 36 100.0 30 .................................... AATCATTTCAGAAAATACTACAAGATCAAT 18634 36 100.0 30 .................................... TTGCCTCTTTATTTTTCAAACCTGCATTAA 18568 36 100.0 30 .................................... CTACAAAATCGCCTTCCAACTCTCCGTTGT 18502 36 100.0 30 .................................... TTTAATAAATTACAAAAGTGATTTTATTTT 18436 36 100.0 30 .................................... AGAGTCTATTAAATATTGTAGACATGACGT 18370 36 100.0 31 .................................... AATTTACTTTAATACTTGACGAATCTTCAAT 18303 36 100.0 30 .................................... TTATTATCTTGAACGTTCACATTACATAAG 18237 36 100.0 30 .................................... TAAAGAAAAATTTTTTACTACTGAATTGCT 18171 36 100.0 30 .................................... TTCACATTTTTCTCCTCTTTTAATTTCACT 18105 36 100.0 29 .................................... CGCAAAACAAAATATTGAAGGTGCATTAA 18040 36 100.0 30 .................................... AATTGAAAGGTAATTCTAAATGGTATTATG 17974 36 100.0 30 .................................... TTAGACCTAGCTACATCACGAATACTAGCT 17908 36 100.0 30 .................................... CAAGTTTTTGAAAAGTGGGTACAGATTTAT 17842 36 100.0 30 .................................... ATTTATCTGATGAAGAAATAGAAGAAGTTC 17776 36 100.0 30 .................................... TAGCTCCAATAAGCAAACTGCAAGAAATGC 17710 36 100.0 30 .................................... TCTTGATATTAGACCCAAGTCAATTTTTAT 17644 36 100.0 30 .................................... GATTAGCAGCATGAATTAATTCTTCCAACG 17578 36 100.0 30 .................................... ATATGATTGGATAGATGGTAAATTTCACGC 17512 36 100.0 30 .................................... AACGATGATACAAAGATATAACGCGACGTT 17446 36 100.0 30 .................................... AAAAAATGGGATTCTATGGGTAGCACAATT 17380 36 100.0 30 .................................... CTGTAAACGAGTTATTTCCTAAGCAATCTT 17314 36 100.0 30 .................................... TTAATTTTATATATTCCAATACTTCCTCCC 17248 36 100.0 30 .................................... TTAACACCAGAGGAAAGAAGAGAATATCAA 17182 36 100.0 30 .................................... TATTTGTGTCAACTATCTAAAAGATACGGC 17116 36 100.0 30 .................................... ATTAAGAAGTGGTGCAATTTTTAGAATGAT 17050 36 100.0 30 .................................... AAATGACTAAAAAGATAAAAATGGAAGAAG 16984 36 100.0 30 .................................... AGGTTATTGCTTTTTCAGAAGAAATGAGTT 16918 36 100.0 30 .................................... TATTGATAGTTATCTTCGTTAAGCGTTATG 16852 36 100.0 30 .................................... CTAAAGGCTGCGTTCTATTGCTCATCCCGC 16786 36 100.0 30 .................................... TATCGGCATTTGGTGTTAACTTAATTACCA 16720 36 100.0 30 .................................... TTTGATACACAAGTAAATGGCGGAATTATA 16654 36 100.0 30 .................................... TGCAAGTTCTTTCTAAATTCATACTAGTTG 16588 36 100.0 30 .................................... TATCAAGTGCATGGTATAGCTTGTGACTTA 16522 36 100.0 30 .................................... TATTGATAGTTATCTTCGTTAAGCGTTATG 16456 36 100.0 30 .................................... CATATATAGGATACGCTGCGGCAGGGAGTG 16390 36 100.0 30 .................................... GAATCGGGCATGAAATTTGGAGATGGCATA 16324 36 100.0 30 .................................... TATTATCCATATTGATCTCACTTTCTTCTA 16258 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 50 36 100.0 30 GTTTGAGTATGATGTAATTTCGTATAGGTATTAAAC # Left flank : AAAATAATTAATAAAATAATTAAAGATTTATTTTTATTATCAAAAAGTGAAATATTTTTAGATAAATACTATCAAAATAATATAATGTTAAAAAACTTTATTTCAGATTTGATATTTGAATATGAAATACCATTGGAAATAGATGATGAAGTAGATTTTACATATATATTAAAATCTTTTGGAATCAAAATAAATAATGAATATAGTTCATATATTGAAAATTTGATTAATTATTTAAAATTGTATTTAGAAGTTTTTGGAGTAGATATTTTTATATTTATAAATTTAACACAATTTTTGAGTAATGAAGAGTTTAATCTATTATTTGATTTTATAATGAAAAATAATATTTTGATTATAAATTATGATAAGATATATATGAATAATAAAATTATAAAAAATCAAATTTTATTTGATAATGATTTGTGTAGAATTTTATAATTTATACCATATATGAGATTACCACTTGTGATGGAGTCGATACCACTCATGGATTTGAG # Right flank : GAATCGGGCATGAAATTTGGAGATGGCATAGTTTGAGTATGATGGGCTTGAGATATAATAGGGATACAGAGAAAAAAGCTTGATAATTCGGGGCTTTCAGCACTGTATCCCTATTTTAAGAATCATAGAAATATAATAAAATATTGTAAAAGGAGGATTCTATGAGAGCAAAAAATATTTCAAGTCAATATATAATTCCTTCTGCTTACAAAGAAGGTGAGAATAAATGAGGTGGGTAATAAAAATAATATTGTTTCCATTCAGCTTTCTACTTAGTGTCCTTACTGCCTTTCTGACATTTATACTTGGCATAGGAACAACTATTCTGTATTTCTTAATGCTGATGTGTATCGTTGCAGCAATAGGATCATTTATGCAAAAAGATATATCACTTGGCATTGAGGCGTTGGTATTAGGATTTTTGTTAAGTCCTTATGGAATACCGATGGTTGGAGCAGCAGTTATAGCATTTCTTCAAGGAATCAATGAAGCAATAAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGTATGATGTAATTTCGTATAGGTATTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 6844-6043 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCFQ01000042.1 Helcococcus ovis strain KG-39 NODE_42_length_11827_cov_13.993504, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 6843 36 100.0 29 .................................... GCTTTTATGGGATAAGGATAGCTCGAACA 6778 36 100.0 28 .................................... AGATGATACCAAAATTTAGAGCGTGGGA 6714 36 100.0 28 .................................... AGATGATACCAAAATTTAGAGCGTGGGA 6650 36 100.0 27 .................................... GTTTGACTTCTTCAACCGAATTGTCGC 6587 36 100.0 27 .................................... AAGTATTTTGAATATTGCCATATAGTC 6524 36 100.0 28 .................................... TGAAAAAAATATAGGTATTGCAACAGTT 6460 36 100.0 26 .................................... AATATAGGAGAAAATTTTGAAGAAAC 6398 36 100.0 28 .................................... GAAATCAAAGTGTATTTGCCAAACTTCG 6334 36 100.0 29 .................................... GACCGCTGTAAATGATTTTTACACACAAT 6269 36 100.0 28 .................................... ATTGATTTTTATACCCTAATCGACTAGC 6205 36 100.0 28 .................................... AGCTATAAGAGGAAGTTTGAAAACCGCA 6141 36 100.0 27 .................................... ATAATAACAGCCCAGTATCATTTGTAC 6078 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 13 36 100.0 28 ATCTACAATAGTAGAAATTATTATGTATTCTTAAAG # Left flank : GACAATAAGGATGAAGCGGTGGAGCATTTACTCCGATTTTAATTTTATCAATAGGAATAATTCTTTGGCCGTGTTCCCTGCATATTTTTGAAGTCCTTTTATCAAGTGTGGCTTCAAACTTTTTAGCAAGTATTCCACGTCTTTTACTATCATCTAATTCTGCTGTATTTACCACGTATGATGTTAATATTCAAGTTCATGTTGCTCTCGCATTTAATTCTAGTTTATCAGTCCACTTTCTATCGCATTTATTTTATATTTTTCAGATATTTCCTATCCTAATTTTCCCTTGTATACCTTAATCCATACAATACAAGACTTCTTCTGTTTTTTTTTTTAAACATTACCATTGTTAAAAACTTTAATATTTTTCTTGTTTAGATATAGATTTATCATTCAATTATTTCATTCGTTCGTCTATCTAAGATTTAACTCCTTGATTTTTTTACGATATTTTTATGTATTATTAAAGAAACAGGAATGGGAAGCGGCGACTTCAA # Right flank : AGCTAATGCATATATATTCAATAAAAGTGCTCTTATTGTCACTAAAGTTAGTATTGAAACGCATAAACTCTTATTTTTCGAATACATTTTTGAAATCCTTTAAGAATATTAAAAATTAAGTTATAGGTTTTACACTATTATTATATCATCATTTTCATGAATTGGATAGCCATAATTAATAATACTATCTTTATCTACTTTATATATCATTACACTATCAGATTCCTTAAATAATTTTTTGAATTTATTCTCAATATCCGATTTGACTAAGTTTAATATCCTCTCTGAATTTTTCACACAAAATATTGAATATTGTATTCTGTATCCATATTTACTTAAATATTTAGAGAATTTAGTTCTAACCTTATCATCTTTTATGTCATAGCTAACAAAAATCATAATTTACCTACTTATATTTATATATCGGAAATTTTGATATATCTTTATTTTTCATAAATGCTCTATAATAATTTTGTATATACAAAAACATTTCTTCTCTA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACAATAGTAGAAATTATTATGTATTCTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //