Array 1 224298-223470 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEUY02000005.1 Streptococcus pseudoporcinus LQ 940-04 Contig1216510750, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 224297 33 97.0 33 ................................T TTACCGACCTGATATGCTACCAAATTTCCAAAT 224231 33 100.0 32 ................................. GAAGATTTAGATGATTGTTCCACTTCATCATC 224166 33 97.0 33 ................................A AAAGCAATCAGAGAAAAATACAACAATAAAAAT 224100 33 100.0 32 ................................. CATCATGTCTTTTGATATAATCAAGCACTCTT 224035 33 97.0 33 ................................T GTATAAATATTTTTGTCAGACTTTTTGTAAGTT 223969 33 100.0 34 ................................. AAAAACATTGCAAGCAACAACACCAAGCGGTGGA 223902 33 100.0 34 ................................. CTGAGACAGAGTTAAGCAAAGCTTTATGAATCAT 223835 33 100.0 33 ................................. CAAATCGAGCAGAGGACGAACGCTTTAACTTGC 223769 33 97.0 34 ................................A CGTCTAATAAAGCAAAAGATCAAGAACGTATTGA 223702 33 97.0 33 ................................T CATTTTGTAATTTAACATGTAGAGTAGTCAAAC 223636 33 97.0 33 ................................T GATTTTCCGTATCCTTCAAACGATACATCATTT 223570 33 93.9 33 ...................T............A TAGTATCTTCATCATTAGTCCCAAGATAAAGAA 223504 33 81.8 0 ...................TT....A.A.T..G | T,T [223479,223488] ========== ====== ====== ====== ================================= ================================== ================== 13 33 96.7 33 GTCGCACCCCTCACGGGTGCGTGGATTGAAATC # Left flank : CGAAATCTATTAGGGGAGAATTAGATTCTTACCCACCATTTCTAATTTAGGTGATTGTTATGATGGTTTTAATTACTTATGATGTTAATACGGAGACCCCAGCAGGACGTAAACGATTGCGACATGTTGCTAAATTATGTGTAGACTATGGACAACGGGTTCAAAATTCTGTTTTTGAGTGTTCAGTGAGCCCAGCAGATTTTGTAGAAATTAAAGATAAATTAACTAAAATAATTGATATGGAGTCTGATAGTGTTCGATTTTATCGTTTAGGTAAACATTGGCAAAAGAGAGTTGAAATTCTTGGCCGTGATGTTTCCTATGATCCTGATATGGGACTTTTACTTCTTTAAAAATCTTTTCGCGAACCGGGGTTACACATTAAATCCTGCGAGATTCGCGCATGAAATGATAACCATTAAGTAAAATTGAGATAACTTTACGAGTAAAAGAGATATCGTAAAAATTTAATTTTACTTTAAATAGTGTTTTTATGTGCT # Right flank : ATAGATATATATAGAAGTTTAATCATTTTATACAAATATGAGAGAAATTTTAAATTGTTCAGCTAATGACACCGTTTACATATGCTCCTCATCTTGCTATAATCATTTCATAATTAAAAAGCATGGTAACATGCTTTTTTATGTGAGGGTGTACTTGGGTATGGTAAATATGGAAAGAGAAGTTGGTCTTACCTTTAGGGAGAAATTGCGGCTTGAGGTTTTTGCTGGTTTTAAGAAAACAGCTTTGGTTATTGGTTTGAGTTATGTGGTGGTGCTGACCTTGTTTATTGTTTCGGTTCAGTATAGTCAATTGGCTGGCGGGACAAATGATATTGTCTCATATTTCAATACAGTCCACTGGAAGAGCGACCGGCTTTTTGCCAAACTTGAAGAAAAGGGTCTAAACCAATTCTTGTCAGGGCACCTGAGTGAGCGTGAGATGTTCAGAAAAGTCTATCAAGAGTCGACTCGTCTACCGTTTCGCTCGGCTATTTCCATCT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGTGCGTGGATTGAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1686340-1685711 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEUY02000005.1 Streptococcus pseudoporcinus LQ 940-04 Contig1216510750, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1686339 36 100.0 30 .................................... TTCGTCTTTCCATTGCAGGTACAATTTTTT 1686273 36 100.0 30 .................................... CACACAAAAAACCGCCCAGAATTAACTGAG 1686207 36 100.0 30 .................................... GACTTGCTTCATAACAGCGAGTTTAAACTG 1686141 36 100.0 30 .................................... TAGTAAATCAGCTTGGTAAAAAGATAAATA 1686075 36 94.4 30 A............C...................... AGCTGGCGCTCAATCGTGTATCGGCAGAAC 1686009 36 97.2 30 .........................A.......... TGATAAAATCTCAATGTGGTTGGAGTATGA 1685943 36 100.0 30 .................................... CTTACGTGCTGAGTTTACTCGTAGCAACCA 1685877 36 100.0 29 .................................... TCTTTTTTCATGATATACTTAATGAGTAA 1685812 36 100.0 30 .................................... TGGATCTGGAGTTGGATCTGGAACTGGAGT 1685746 36 86.1 0 .............A...........A.......TGA | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 97.8 30 GTTTTAGAGCTATGTTATTTTGAATGATTCCAAAAC # Left flank : TGAAAAGCCAGAAGTGAAATCAATGGTTGATAAGTTAGCAGCAACTATCACAGAATTAATTGCCTTTGAATATCTGGAAAATGAACTTGACTTAGAATATGATGAGATTACTGTTCTTGAATTGATTAAAGCTTTAGGAGTTAAAGTTGAAACAAGGAGCGATACTATCTTTGAGAAATGCCTTGAAATTCTTCAAATTTTCAAATATCTAAATAAGAAAAAATTACTTATTTTTGTTAATTGCGGCTCTTACCTTAATCAAGAAGAGTAAAAACAATTATTTGAATATATTGACTTATCGCAAGAGTGTGTTTTATTTTTAGAACCCCGTCAATTATATGATTTTCCACAATATATTTTAGATGATGATTTTTTCCTTTTAGATTACAATATGGTATAATAGATGAGGAAGTAACTTTAAAAAATGAATTCTTCGAAGTTGAGGATTTGTATTGGATAAATAGTGTGAGTATGAATTTCGCGGAAAAATTTTCTGCGAG # Right flank : GGTGATTTAACGTTATCAGTGATAAAGGCTTGTTGATTTTTCTATGCAAACCCTTACATTTTTTGCTATAATGGTAAAAAATAAGAGGAGACTGTTAATGGAGAAGACATTTTTTATGATAAAGCCTGATGGTGTTCAACGGGGATTAATGGGGCAGATTTTAAGGCGCATTGAGAGACGAGGGTTTAGAATAGAGCAACTGCAGATGATAAGACCAAGTCGCGAGCTTTTGGATAGTCATTACCAGCATCTAAGAGGTAAAGTTTTTTACCCTTCTTTGCTTGATTACATGATGAGCGGTCCTCTTTTAATCGGAATACTTTCAGGTAGTGATGTTATTGCGTCTTGGCGTACTATGATGGGAGAAACCAATCCCAAAGATGCCTTGCCAGGGACCATTCGTGGAGATTTTGCTCAGGCGCCGGAAGCTAATGCTCCGATGATGAATTGTGTTCATGGTTCTGATTCACTAGATTCTGCTCGGCGTGAAATAGAACTTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGATTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //