Array 1 789-1874 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANAE010000089.1 Clostridium botulinum D/C strain IZSVe-TV_10380_20_14 NODE_89_length_2545_cov_38.0976_ID_10943, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 789 30 100.0 36 .............................. TTATTTAGTTCAAGATCATTATTTAGTAGAGGAGGA 855 30 100.0 34 .............................. TTTTAAATAAGTTAATTAGTTCTTTATCAATATC 919 30 100.0 37 .............................. ATTTATAGAATTTGATGGAATTGCTCATTTGAAAACT 986 30 100.0 36 .............................. GGTGCAGTTGGAACTGGAATAGATTCGTTATCATCT 1052 30 100.0 36 .............................. TTACTAACTTCTAATGTAATCTTTTTCTCTGTTTGC 1118 30 100.0 38 .............................. CATATCTAAAATACTGTCTATTTCATTTAGTGCTTCAT 1186 30 100.0 36 .............................. AATTAGTGCAGAACAGTATAAAGAGTTGATGGCTAA 1252 30 100.0 36 .............................. TCTGTAAATTTAAATATTCCTAGAAGTTTTTGCCCT 1318 30 100.0 34 .............................. ATTCCTGTCCTGGATATATCATATTAGGATTTTT 1382 30 100.0 36 .............................. TGTAGCCGTAATAGCGGCTACAGAGATGATGGAATT 1448 30 100.0 35 .............................. TAGCAAAAACACAGTTAATAGATACGTGGAGGAAA 1513 30 100.0 35 .............................. ATTCTACTGGTTGTGGTGTATGTGCTAATATTTCT 1578 30 100.0 38 .............................. TTTGTTTATTATCCATATCTTCTCTTACACCTATAACA 1646 30 100.0 37 .............................. AAGTCTAAAGAAATAAATATAAGTAAAGAAACTTTAA 1713 30 100.0 36 .............................. TCTCCTTTAATGTCAAGTTTATAATATAAAAGAGAG 1779 30 100.0 36 .............................. AAAAGTAGATTACTAATGAAGGAACAACCAATTGTA 1845 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 17 30 100.0 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AAGCCATTTAGGCTTAAGGAGAAGATATAATGAGTAAAAAATTCAATTATAATTATGCATTTTTATTTTATGATGTAAAAGAAAAAAGGGTAAATAAAGTATTTAAGGTTTGTAAAAAATATTTAACTCATTATCAAAGATCTGTTTTTAGAGGGGAGATAACACCTTCTAAAATAATAAAATTAAGAGAGGATTTAAAAAAAGTAATAGATGAAAGTGAAGATTTTATATGTATAATTAAGTTATTGAATAATAAAGTATTTGGAGAAGAAGTGCTAGGAGTAGGTATTGAAACTGCGGAGGATTTAATTTTATAAAATTATTTTACCAACCGATTAAAAAATTGAAACTATCCGTAACCCTTGATTTAACTGGTTTTGAGTGCGATTTTGGTTTGAAAAATTAAATTGTAAAAATTGGTTGGGAAAAAACTAACGAAAGTGTTTATTTTCAATGATTTTAAGAGTATAATATAAATAAGGAATGGCTATTTTGCTATG # Right flank : TGAAGCAAAAGATAATATGTTATCTATAAATTTTATATGTTGTAATTCGACAAGTGCCTGGCACCAATTACTCCAAGTGCTTTGTATGGAACCTTCCCGCGTGCTGAAGTGATTGGATATGTTGATTGTGTTTGTCCAGTATATATATCCATTACCGTAGCAATAGCGTCAACTTTGTTGTAAAATTTTGTAATGTTCATAAAATAAATTATATAATTTGATTTTCTTATGAATGTAATAGATCCAGCATTACCCATATCTACTACAGATCCCTTAGCTTTTACTTGGCTTTGTCCACTATTGTTTAACTCTTGAGTCTGTAGTGGTACTTCTATTGTTTCTCCTTCTTTAAGTTCTATTAATGAATCCTATAAATTTTCAATATCAATCAAATCTTTTTTATTATTATAATTTTCCATTTTTATAGCATCACTAGTTGTGATATTGTTATTTACAGTAAATTTATTATCCCAATGAGAATCTGTTTCTGAAGCATAAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 2679-65 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANAE010000087.1 Clostridium botulinum D/C strain IZSVe-TV_10380_20_14 NODE_87_length_2827_cov_22.8993_ID_10939, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 2678 29 72.4 37 CAACA.CC.A................... CTAAATATTTCTTTATCATCTAGCGTAACCCAAACTT 2612 29 100.0 38 ............................. GTTTCTTTTATTAATTCTCTCAATTTATAATTTTCTGC 2545 29 100.0 39 ............................. CTAATTTTAGAAATAGATTATACTCATTTTACTACACAT 2477 29 100.0 37 ............................. TTTCTTTTAGTTCATCAACTTTCAGACTCTCTAAATT 2411 29 100.0 36 ............................. ATATATACAAGGGTTAGAGATACTATAAAATTGTAT 2346 29 100.0 36 ............................. ACATGACATGGGACAAGTTTTATAACTATGTTGTAG 2281 29 100.0 37 ............................. TTTGTAAAGCTTGGACAGTAACATTCCCAACCATTCA 2215 29 100.0 36 ............................. TTCTTTAATTGACCTAATACATTAGAATTTGTACTT 2150 29 100.0 35 ............................. TTTGTTTACTCTCTATGTATTCTGTACCCTTATCT 2086 29 100.0 36 ............................. AAGTAATTATCTAATTCTGCAAGAGATTTATCACTA 2021 29 100.0 36 ............................. ATTTTATTCACACAATCTTCATATTGTGAAGCTATA 1956 29 100.0 38 ............................. GCAGATGATGGAGATGACATACCATTTTAGGAGATAAG 1889 29 100.0 38 ............................. ATGATAAAATGTTACATCATTTGAAAATTGATAGTTTG 1822 29 100.0 35 ............................. TCTATTGAAATAATAGCTCTTTCTTTAATAACTTC 1758 29 100.0 38 ............................. CTCTTTTAAAAGACACTTCTAAACTTTTAATCGCACCT 1691 29 100.0 38 ............................. TCGTGTCGATGCTGCCGAATTTGTCTCATAAACTCAAA 1624 29 100.0 39 ............................. TTGTATAGCATATATTGAAGCGGATAATCATAATATCTT 1556 29 100.0 37 ............................. AATTTAAAACAGTTAAAAAATACAAACCTATCTTTAT 1490 29 100.0 36 ............................. AAGTATTACTTTAGTCAATATGTAGTTTCAATTTAC 1425 29 100.0 39 ............................. TTAACTATACCTTTATACTTTTTACCACAACTTATATAT 1357 29 100.0 38 ............................. CTTGAATAAATGTTTGTTGGTAATAAAAATCCATTTTC 1290 29 100.0 38 ............................. CAGGAAGTTTCACGTTCAAGTTTAAACCGTTAGCGGGA 1223 29 100.0 37 ............................. TTTATAAATCTCTGTGCTTGTTTCAAAATCACTCTGT 1157 29 100.0 39 ............................. TAATATCCCGAAAAGTCAATACGCCCATTAGCGTTGCAA 1089 29 100.0 39 ............................. ATAGGTATCAGTGGATATGCTTTATTACAAGCAATATCA 1021 29 100.0 37 ............................. ATGCTGAATGCTTTTCCATACGCCACTCCAAAATCAT 955 29 100.0 38 ............................. TTAATACATATATGTCACCATCTTTCAGTGCCACCTCA 888 29 100.0 36 ............................. AACGCTATCAATATTCCCAATACAAAGAGTATCTCT 823 29 100.0 39 ............................. GGTTTATTATATATTTATCTTTATTAATCATATATTTAG 755 29 100.0 38 ............................. ACAAAAATATGTTTAGATATATTATATTCAGATATTCC 688 29 100.0 38 ............................. CATTAAGTTCACAATCTACTATTTTTGCGAACTTATTT 621 29 100.0 40 ............................. GTCTACTATAAGAAAAAGATTTAAAAAAACGGGATATTTA 552 29 100.0 38 ............................. AGATTCGTTAAAGGAATATTTGATTTTTTAAGTGGTGT 485 29 100.0 36 ............................. GGCAAGGCAGAGGATATAAAACTGCCTACACATAAA 420 29 100.0 37 ............................. TTAAATATATTGTTTGTAATTTGTCTTGAGCTTTAGT 354 29 100.0 36 ............................. AAATCAAAGGATGGAGATAGAATGGTATGGCTTACA 289 29 100.0 37 ............................. ATTTTTGAGGCTATCCCATTTGTTCATTATGCTTCCA 223 29 100.0 37 ............................. TAAAAACTTAGGAGGAGTTGAAAATGAAAATAATAAA 157 29 100.0 35 ............................. GTTGATAATTTGCATAAACTTTTCTACCTCTTCGC 93 28 82.8 0 ................TA.G.-...T... | G [68] ========== ====== ====== ====== ============================= ======================================== ================== 40 29 98.9 37 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : GTTTCAAAAATTTTAAAATAAATGTTTTCGCTTTGTATATTTAATGTTATAATCATACTTGAGTCATCCTTTGTATACTATGGTTTTTTTAGCGAGAACATTATATCACAAAGTGATGACTTATTTATTTTTTTGTATTTTTAATTAT # Right flank : TAATTAAAAATACAAAAAAATAAATAAGTCATCACTTTGTGATATAATGTTTTCGCTTAAAAAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 107-1319 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANAE010000098.1 Clostridium botulinum D/C strain IZSVe-TV_10380_20_14 NODE_98_length_1418_cov_23.0522_ID_10961, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 107 30 100.0 35 .............................. TAAAAGTTTAGATAAACATTTATAAGATATCGTGT 172 30 100.0 34 .............................. TAAATAACAAAACAGGTGCAATAGAGCTAAAAGC 236 30 100.0 36 .............................. AATGCTGATACTAGAAGCAATTTCGATGATGTTAGT 302 30 100.0 38 .............................. ATATTATAAGTTACACAAGAAGTTTTAAAAGTTCTTAA 370 30 100.0 35 .............................. TCTATTAAAATTAATGCATTTCTTACATCAACTAT 435 30 100.0 36 .............................. TACTCTTTGTAGCCATCTTTAAATTCAATTTCTATC 501 30 100.0 35 .............................. GATATTTTTCTTTTGTCCTCTCCTTCTACTCTAGT 566 30 100.0 35 .............................. TATTGCGAATTTAATTCTTCTAAATTAGTCCCATT 631 30 100.0 36 .............................. CCTGCCTAAAAATAGACAATAAAAAAAGAACTCTTG 697 30 100.0 36 .............................. AGGCAGAAACATGAAAAAGGTAGGTAGCGTTTTAGA 763 30 100.0 36 .............................. CCAAATTAAAACAACAGCATTTTTTATAACCTTGTT 829 30 100.0 37 .............................. GAATCTACAAAATAGTGTGCCGAAGAATTTCTATTAC 896 30 100.0 36 .............................. CCATAAAAAATCTTATATTCTATTCCCCAAGATTCT 962 30 100.0 36 .............................. AAATTTCTAATATCTTCTTTCGTCTTTTCTTTAGCT 1028 30 100.0 36 .............................. TAGATATTACTTATTTTAGAAGGTTCAATTGATATA 1094 30 100.0 35 .............................. AGAGCTACAGAAGGATTAATGGGTAAGGTTAAAGG 1159 30 100.0 36 .............................. CAAGCTGGAGAAAGAGCTCTTGAAATATTGAAGCCT 1225 30 100.0 35 .............................. AGCTTTAGAATTCCATCCTTATCCTCAACATATTG 1290 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 19 30 100.0 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : ATCAATGTGAATTATTAGCTAGAAGTGTAGCATAAAAAAGTTTGACTTTTCGTGTCCATGATATTGACATAAGACCATGTTGATATGACCGCATCTCCCGTTTCTAG # Right flank : TCAGTTGAATTACTTCCCATATAAGTGCTATTATGGGAATGCAAGAAAGTGATCATCTAAGGATGTAAGAATTAGATTTATGTATAATACTATAATTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 1104-478 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANAE010000097.1 Clostridium botulinum D/C strain IZSVe-TV_10380_20_14 NODE_97_length_1430_cov_36.7598_ID_10959, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1103 29 100.0 39 ............................. CATAATATTAAACCTTCCATAAGTGCATATATATTTGTA 1035 29 100.0 40 ............................. GTAATTGATTTAGAGTTTCTTCTGAAAGTTTATCTCCTGC 966 29 100.0 35 ............................. AAGGATAATGACAGTTTTCTTGTATTCGATATTAG 902 29 100.0 37 ............................. TTGAAATACTGAAGGAAGGGAAAAGCTATGCTAAACA 836 29 100.0 36 ............................. TCTGAATCTATAGATTGTACACTTTCTTTAAAATCC 771 29 100.0 37 ............................. AAGAAATAATGGAGTTAACTAAAAGTAATATAAATTG 705 29 100.0 37 ............................. GGTATAGAAACTGTTTTAAAGATCAAAAAAGCCCTCA 639 29 100.0 38 ............................. GACTATTGGAATAACTTAGCGGCTCTGTATCAAGCTGA 572 29 100.0 37 ............................. GAAGGTACTGGTGCTTTATATAAAGATACTGCTTTAT 506 29 93.1 0 .........T......C............ | ========== ====== ====== ====== ============================= ======================================== ================== 10 29 99.3 37 GTATTAATAGAACTATGTTAGTTATAAAT # Left flank : ATCAATGTGAATTATTAGCTAGAAGTGTAGCATAAAAAAGTTTGACTTTTCGTGTCCATGATATTGACATAAGACCACATTAACATGAGATGTATTTAAATAATGTAAAAGGATATTGTTTTGCTAGTAATGCTTATGTTGAACATTAACATGAGATGTATTTAAATAACATAAGGTTGTAATCTATTTCCATTTCATAAGGTTGAACATTAACATGAGATGTATTTAAATGAAGCAAAAGATAATATGTTATCTATAAATTTTATATGTTGTAATTCGACAAGTGCCTGGCACCAATTACTCATAGGAGAAATGAAGAAATGTTT # Right flank : TCATAGAAAAACCTCCTTGTAATATTTTTAGTTCTGTTAAGTTATATGAACATTGATTCCTCTCAATCTATTGAAATATAATAGATTTTTCACAAATATATTACCTCCCAGAAAGGAGAGAGAAATCAATGAACAAAGCTAATAAAAAAATGACCTGTCCTCGATGTTATAGCCATAACCTTTTTAGGTTTGGAAAGATCACTTTCTTACATTCCCATAGTAGCACATACATATATTCACGACCTTAATTCAATAATTAATTACTAAACATTTATTATAAGTATTATTGGTATTGTAACTTAAGAGATCATATAACAAAAGTATATATATTAATATATTGGTAAATAAAGGAGTGGTAATATGAGAAAAGTAACGAGTATATTAACATCATTAAGTTTGTTTATTTTTTCCATATTAATTTTAATAGATTTTATGATTATAGGAAGTGATATTCCAGTTAACATTCATCGCAATGAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 1200-1359 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANAE010000097.1 Clostridium botulinum D/C strain IZSVe-TV_10380_20_14 NODE_97_length_1430_cov_36.7598_ID_10959, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1200 30 100.0 34 .............................. CTTATGAAATGGAAATAGATTACAACCTTATGTT 1264 30 100.0 36 .............................. ATAAGCATTACTAGCAAAACAATATCCTTTTACATT 1330 30 83.3 0 .........................GGTCT | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 94.4 36 ATTTAAATACATCTCATGTTAATGTTCAAC # Left flank : TAATACCAATTTATATTACTTTTAGTTAACTCCATTATTTCTTATTTATAACTAACATAGTTCTATTAATACGGATTTTAAAGAAAGTGTACAATCTATAGATTCAGAATTTATAACTAACATAGTTCTATTAATACTGTTTAGCATAGCTTTTCCCTTCCTTCAGTATTTCAAATTTATAACTAACATAGTTCTATTAATACCTAATATCGAATACAAGAAAACTGTCATTATCCTTATTTATAACTAACATAGTTCTATTAATACGCAGGAGATAAACTTTCAGAAGAAACTCTAAATCAATTACATTTATAACTAACATAGTTCTATTAATACTACAAATATATATGCACTTATGGAAGGTTTAATATTATGATTTATAACTAACATAGTTCTATTAATACAAAACATTTCTTCATTTCTCCTATGAGTAATTGGTGCCAGGCACTTGTCGAATTACAACATATAAAATTTATAGATAACATATTATCTTTTGCTTC # Right flank : TATGTCAATATCATGGACACGAAAAGTCAAACTTTTTTATGCTACACTTCTAGCTAATAATTCACATTGAT # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTAATGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 31302-30746 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANAE010000028.1 Clostridium botulinum D/C strain IZSVe-TV_10380_20_14 NODE_28_length_31414_cov_66.7382_ID_10821, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 31301 30 100.0 35 .............................. TAGAAAACTTCTTTTTTGATAGGATTATAATACAT 31236 30 100.0 36 .............................. TTTTCACCCTCCTTTACATACCATTTTCCATTTATT 31170 30 100.0 35 .............................. TATGCCCTCCCAAATATTAAAATTTCTCTATTTAT 31105 30 100.0 36 .............................. TATCAAAAACGAACAGCTAGACGAAATTTCATGGAG 31039 30 100.0 35 .............................. GTATTAGGGTTAGAGTTATTATAGTGCTTTTTACT 30974 30 100.0 36 .............................. GAATCGTTAAATTTAACAGTATGTTGTATTATTTCA 30908 30 100.0 37 .............................. CCAAATAGAAAAAGAACATCAACAACAGATTAATACC 30841 30 100.0 36 .............................. AAATCTGCATTATGTGCTACTATAGGTAATTTACCT 30775 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 100.0 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : CACTTTAAAGATGACGATGAGTAAAAAACTACACCCTTAAATGATCGGAAAATTTCATTATTATCTTGACGTTTATAACCAGCTTTAGAAGTAACAAGTAGACCTATTAAAT # Right flank : AGAAAGTAAGTAAATATTAATAGAAGTTGTTATAACAACTTCTATTATGAGAATAATTGTTATAAAAGACATGAATGATAGATGTTTTTGAAAAATATACTCAAAGTTACTCAAAAAATGACTAATATACTCAAGAATTTAAAACACCCCTATAAGTAAAAACTTATAGGGGTGTTTTAATTATCTGGAGTAATTAAATCTATATTGTGTTCTTGAAAAAACTTAACATATTCTTTAGGTGGAAGCCTATCTGTAATAAAACAAGTGATATCTTCCAAATTACAATAAGTTTTAAGAGAAGCTGTATCTAATTTTGAGTGATCAGCTAAAAGTATTACATTTGAACTATTTTCAACTACTGTTTTTTTTACATCATATTCAAAATTAGATGAATTAGTAACTCCTTTATCAATAGAGAAACCTGTAGTGGCCATAAATGCTTTCGATATATTATAATTTTTTAGGAAGTTTGAAGCTTCTACACCGATTAAAGAATTAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 286-2024 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANAE010000011.1 Clostridium botulinum D/C strain IZSVe-TV_10380_20_14 NODE_11_length_78680_cov_58.9058_ID_10787, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 286 30 90.0 35 T......C......T............... AGCTTCTAGTATGTATTGAACCACTTATACCTACT A,CT,CA [288,291,298] 356 30 100.0 35 .............................. AAATTTAAAAGAGAGTTTAGAGAATTAAAAAAACA 421 30 100.0 36 .............................. AAAATATAATAAATATGGTAATGTATCAATTTCAGG 487 30 100.0 37 .............................. TCAACTAATTTTCTAATTTCTTCTTTATTTATAGAAC 554 30 100.0 37 .............................. ACTTCGCCTATGATTGTTTCTGTTTTAGTTTGTATTT 621 30 100.0 36 .............................. GTCAGTTAAAAATATTGAAAAAAGAAATGACTTAAT 687 30 100.0 35 .............................. AAAAAGGAAGAACCTCACACAGGTTTAATATATAT 752 30 100.0 36 .............................. AGTAATTAAGTAACAAATATAGGATGTAAAATATAA 818 30 100.0 38 .............................. GTTATCTCCAGAAATATATGGTACTTATCAAGTAACGA 886 30 100.0 34 .............................. TAAATTGCATTAAGCTAACAGGAAGTACAGTACA 950 30 100.0 34 .............................. GAATAGAAGACGTAATTGAATACGTAGATATAGA 1014 30 100.0 36 .............................. CTTTGCAGCAGAAACAGAAAAGAAGAATGAATACTT 1080 30 100.0 36 .............................. AATTACCCAAAATTCACCACTACGTCTACCAAATTT 1146 30 100.0 34 .............................. ATAAATTGGAAAGAAAACCAACGCTAGAAGAAGT 1210 30 100.0 35 .............................. ATAAAAATATTAGAATAAAAATTTTAAAAAAACGT 1275 30 100.0 35 .............................. AATATTAAGCATGCTGATCTCTTACCATCTTTGGT 1340 30 100.0 36 .............................. TGTAAAAGCATTGCAAGATAAAGACATAAGAAACAT 1406 30 100.0 35 .............................. CATAGTCAGTATATTTGTAATGCTATTAGATTTTA 1471 30 100.0 36 .............................. CCACCCCCATTAAATTAATTTAATAGTAGCAAATTA 1537 30 100.0 35 .............................. TCATTTAATATTCAAAGTCAACGTTATGTAGATGG 1602 30 96.7 34 ..............T............... GGATTGAAAGAATAATTCAGTACCTGGATGAAAC 1666 30 100.0 35 .............................. GGACCTACAAACAAATTTAATTCAAGTGTAGAGAA 1731 30 100.0 36 .............................. TACAACTAACCGTATGCTAGTTGAGAATATGCAAGG 1797 30 100.0 36 .............................. AAACCAACAAATATCTGATATAAAAACATCTAATAA 1863 30 100.0 36 .............................. AATGGTATGTCATTATCATCAATAGGTTCTATATCT 1929 30 100.0 36 .............................. GAAAAGGCAAATGTTATTATAGGAAATTCCCATTAA 1995 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 27 30 99.5 36 ATTTAAATACATCTCATGTTAATGTTCAAC # Left flank : CTCTTTAATTTTTGCCATTTCTTTTTTTAGAGCTTTAACTTCTTTTAATGTCATGACTTCATTATCATCTATTTTTACTTCCTTAACATCTTTTATCCAGCCGTTAATTGTTGATTTTGCAATGCCATATTCGCTATTTAGCTCTGTTAAGCTCATCCCTGTTTTGTATAGGTCTACTATCATATCTTTATATTCTTGATCATATCTTTTGCCCTTCCCCATGGTAGACACATCCTTTCTTAACTAAATATTATTTTACTTAGTTCGACTCAATGTGTCCACTACT # Right flank : CCATAGGGAAATAGCCATTCCTTGTTTTTATTATACCCCTAAAGCTATTGAAAATAAACACTTTTATTATATTTTTCCCAACCGATTTTAGTAATGCCATTTTTGAAACTTAAACATATATCAAAACCAGTAAAATTAAGGATTATAGCTGGTTTTAATTTTTAAATCGGTTGGGAAAATAATTTACTTACTTTTGTATAAACAATAACCATAACCAAGAGAATTTTTTTCTAAAATTCCTACTGCCACAGCTATATTTGCCATGAATTGCGATATATCATCATCTTTAATTTCTATTTCAAATTTATTCCCCAATAGTTTGATTTGTTTGTATTTACATCCTATAGGCATTCTATTTTTTAATTTTATAGATTTTATCATATCATGTTCTAAAATTTCATCTATATCCTGAATAACTTTTATCTTCTTTATTAAATTCTCATTGATACTCTTTTTTAATAAATCTATATCCATTTTATTAGTCCAAGGCTCATTATTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTAATGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 805-442 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANAE010000106.1 Clostridium botulinum D/C strain IZSVe-TV_10380_20_14 NODE_106_length_865_cov_35.1624_ID_10977, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 804 29 93.1 37 ......C..A................... GATTTTAGCAAACTAGGTAAAGTAAAAAGTGTTAATT CCA,AC,A [791,797,801] 732 29 100.0 35 ............................. TAACAATTCAGATAACTGTTTTTGAGTTAATCCAT 668 29 96.6 37 ..................A.......... TTTGATTACTTTAATACACTTATACATGGGATTACCC 602 29 100.0 37 ............................. AGCTTTGTACTTACTGTAATATTTGCTCCAAAACCGG 536 29 100.0 37 ............................. ATATAGCAAGTGCGGATTATCAAAAATTGATATATCA 470 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 98.3 37 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : ACACTTAAAATTATTAAACACATGCTCGCGCATAAATGCTTTTTAAGATTTGTAAAAATT # Right flank : TTAGCTTTGTCACTAGTTCTAAATGTTAATCTTTTTGGTTCTTTCCAATGTTTGTTGAGTAAATATTTAATTTATGATAAAATTACTTATAATTTGATAATACTAAGGAGTTTTTTATGGATGAATTTATAAAATTATTGGATGAAAATCTTGATTACATTAGTCATAAAATTATAGATGATACTTTTTATATACAAGATCAAATAATGATGTTTTAAAGTGGTTAAAGAGTTATCCTAACATTAAAGTAGTTTCTAGAGATGCTTCTATTACATATAAAAATGCTATTTCTAAAGCTCATCCATCTGCGATGCAGATTAGTGATAGATTTCATATGCTTAAAAATTTTACGGAGTATTGTAAATAATATTTAAATAAATATTTTAAATCTCAAGTTATGATAAATAATAGTAATTCTAATAAACAGGAAATGAAAAATATC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1405-65 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANAE010000060.1 Clostridium botulinum D/C strain IZSVe-TV_10380_20_14 NODE_60_length_13760_cov_37.9974_ID_10885, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1404 29 100.0 36 ............................. TTTGTTTCTTTTTAGCTTCTGCTTTAGCTTTTCTTT 1339 29 100.0 38 ............................. TAATAAGCCATTTCTCCGTTAGTTTGGACTTGGCTTAT 1272 29 100.0 36 ............................. GATAATTTAAAGTACAATGTATTAGCAATAAGAAAT 1207 29 100.0 36 ............................. TTCACCATACATCTTAATCTTCTCCTTTCATTTCCT 1142 29 100.0 35 ............................. CAAAAGCTAGAGAATGGGGAGCAAAAACGAAATTT 1078 29 100.0 36 ............................. TTGAATTTAAAGCTCCTTGTGATGGTAAAATAACAG 1013 29 100.0 36 ............................. TCTCAAAACTAATTATAAAAATGATTATTATAATGT 948 29 100.0 37 ............................. ATACATTATTGGATTAATCAAACCAAAAATTCAATCA 882 29 100.0 38 ............................. TTAAAATTTGTATAGCTTCTTTGCCTGTTACGGCGTTC 815 29 100.0 34 ............................. TCTGTATTAAGTATGTATTTATTATTAACACCGC 752 29 100.0 37 ............................. ACTTTAATATTTTCTTAACCATTTTTTCTACTTGCTT 686 29 100.0 38 ............................. CCTTACAACTTGTATTAAGTGGTAAAAAAATAGTAAGT 619 29 100.0 36 ............................. ACAAAAAACAGACAATATTTAGCTGATAGAAAATTT 554 29 100.0 36 ............................. TAAAGTCATATGACATAACAAAATTTTTATTATCCA 489 29 100.0 38 ............................. AAATTTATTTGCATGTCTATCCTCCACAACTAAAATGG 422 29 100.0 40 ............................. CCAATTCGAAGGTATTTACATAAGAATGATACTGAAATAA 353 29 100.0 36 ............................. AAAATATTAGATTTGAAGATATAGATAGTGTATTAA 288 29 100.0 36 ............................. CTATCTTTTTCATTTTTTAGTGTTAAGCAATCATCT 223 29 100.0 36 ............................. TTCTTTTTTAATTGGATAAAAGGTAGAGAATTATTT 158 29 100.0 36 ............................. ACTTGTGCATATTAGAAAATCCAAGCATGGTTTTTC 93 28 82.8 0 ................TA.G.-...T... | G [68] ========== ====== ====== ====== ============================= ======================================== ================== 21 29 99.2 37 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : ATTGAAGATGAAAAATATAAACCTTTAAAGGCATGGTGGTAATTGATGTTTGTTATACTAACATATGACATTGAGAAAAAAAGAATAAATAGAGTAAGAAAATTATTGAAAAAATATTTAATATGGACTCAAAATTCAGTATTTGAAGGAGAGATTACAGAAGGGAAATTGCATAAGTGTTTATCTGAGATAAATAAACACATTGACAAAAAAACAGATTCAATATACATTTATAGAGTTAAGATGAGCAAAAATATAACGAAAGACGTAATAGGTATTGAAAAAAGTTTCGATGAACTATTTTTGTAAATACAATTTGCAGTATTGCAAACAAATGTTCTCATTGCCTTAAAGCCTTGACATATCTAGCATAAAGGGTATTATTTAAGAAAAATCCAAAACACTACTTAAGGTTTACTGCAAAATTGCTTAAATTAGAGTTATAGCCGTTTGGTTCAAGGCTAGTAGTATCAATAGGTTCAGGTGTTTTGTATTTTAGG # Right flank : TAACTAATTTTTACAAATCTTAAAAAGCATTTATGCGCGAGCATGTGTTTAATAATTTTAAGTGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //