Array 1 34-860 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJYN01000127.1 Tetragenococcus koreensis strain NBRC 106072 sequence127, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 34 32 100.0 34 ................................ GATTCGGAAAAGGAAGCACAATTTTATATCCGAT 100 32 100.0 33 ................................ AGAAAACATAAACAATGGCTTCGGTGAAGACCA 165 32 100.0 35 ................................ AAGCCAGTCAGATGACGCCCAAACGTCTTTAAACT 232 32 100.0 35 ................................ TTGCACGCCATTGCCGTTTGCCCCTAAGACCAAAT 299 32 96.9 34 ...A............................ TTTATAACTATTGTAGATTAATTTTATATTCTTC 365 32 100.0 34 ................................ TTTTGCCATATTTAAACATCTCCTATATATTGTT 431 32 100.0 34 ................................ ACTCTTTACAATGACTAGTCGCCCCACAATAGGT 497 32 100.0 33 ................................ GCTATCCCTTTACGAACCTGGCAAGATTGGGAG 562 32 100.0 34 ................................ GAAAATGTTCGCTTGCAAGAAATAAAACCTTATA 628 32 100.0 36 ................................ AAATCGTATGTTTAAATAGTTTTCTCTTGGGTCAAT 696 32 100.0 34 ................................ TATGGTAGGCACAGGAATAATGGGAATTATTACT 762 32 100.0 35 ................................ AACATTTTCTGTGCCTTATTTTTTGCTTGATTCGA 829 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 13 32 99.8 34 GTCGCTCTCTTCATGAGAGCGTGGATTGAAAT # Left flank : GTCGAATTAATTGAATCTCATAAATCAAAAGCGG # Right flank : | # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCTTCATGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 10207-9306 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJYN01000048.1 Tetragenococcus koreensis strain NBRC 106072 sequence048, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 10206 32 100.0 35 ................................ ATCCATTGATCTTTATGCTATGTCATCTGTGGGTT 10139 32 100.0 34 ................................ GATCTCTTTCATCCGTTTATCTATCTCAGATTTT 10073 32 100.0 36 ................................ GATAACACCTTTACTTGTGGGGTTAACCCACTTTCC 10005 32 100.0 34 ................................ TCTGTCTTCCATCACGTTATTCAAAGCTCCTTGT 9939 32 100.0 34 ................................ ACCAGTTCAGCGTGCTGTCCCTCAACCTTAAATT 9873 32 100.0 35 ................................ ATAAATTTGTTGGCCATATTATGATTCATGTCTAT 9806 32 100.0 36 ................................ GATATAGACAGTAAATGGAATCAGTGCGATTCTGCG 9738 32 100.0 35 ................................ AGTTTCTGTGCTTTCAGGGATTTTATCTAAACCAC 9671 32 100.0 35 ................................ CCGACGAAAGGGGATCAATAATGACACGAGCAGAA 9604 32 100.0 36 ................................ TGTGTTTAAAATTTTGAAATTGGAATGTGTCACATC 9536 32 100.0 35 ................................ CCTTTGAAATTGGGATCATTAGCTAAAATCGTTTC 9469 32 100.0 34 ................................ ATTCCATTTGAAGATTAACGTTCCTGTAGGACTT 9403 32 100.0 34 ................................ ACTCGTAAACCTGCATTGCGCAAGCCAATTTTAG 9337 32 96.9 0 .....................A.......... | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 99.8 35 GTCGCTCTCTTCATGAGAGCGTGGATTGAAAT # Left flank : CTATTCGAGACGATTTACCAAGTTATCCACCTTTTATGGCGTAAGGAGAGCAAGCCCATGATGATTTTAGTCACTTATGATGTAAATACAGAGACGAAACAAGGAAGAAAACGTCTGAGACATGTTGCAAACTTGTGTGTTGATTATGGACAACGAGTGCAAAATTCTGTTTTTGAATGTTCGGTTGTTCCAGCAGAATTTGTTGAATTAAAAGGAAAATTAGCTGATATTATTAATCCGGAGCTTGACAGTATTCGGTTTTATTTGTTAGGAAAGAATTGGCAAAATAGAGTAGAACAAATGGGAAATAATGATAGCTATGATCCGGATAAAGATGTTTTGCTATTATAATATATAGTTTTGCGCGAGCCGAGGTCGCACATAAAATACTAAGTTGGTTCGCGCAAAATTGGTACTATTTTATGAAAATTACTCATTTTTTCCGATTTATTAGGTGATTTTCTAAACCGAAAGTAGTACAAAGCCGTGTATTTTCCGCG # Right flank : AACATATTGTATGATAATCAAATATGTGTTGTTTTAGACATTAGCGTTTAATTATCGAACTAATCAGTTTTTCTTAAAAATAAAACATAAGTGTAAAATTTATTAAGGTTCACTAACGGATGGACAAAAAACGCACTTTTGCAGCTAGTTTGACAGACACTAATGCCAGAGATAGTTATTTATGGGGTCCAACAAGCTTTAGCGGAAAGAAAAAAATTATGACTGAGGAGAAAATGAACGAAATGCTCTCTATTCTTGACTTATCAGGGATTGAATTGGGAATTTATTACCTACCTTTTCGAACATAGGAAACCAACTGGCAGCACATCAAACGAAGTTTTACTTCTCTTGTTATGATTTTGATCTATCTGGCACAAATGCGATAAAAATAAATCTCCTCTTTTGCGTCTATTGAACATTCCTAGTATAATAACTATGTTTTTGACAGGAATATTCAGAGGTTTAAACAGAACGTACGAGATAGGAGAATATACATAATG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCTTCATGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 11783-12753 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJYN01000065.1 Tetragenococcus koreensis strain NBRC 106072 sequence065, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 11783 32 100.0 37 ................................ CGGTTTCAATTTGCGAATGATGGCAGTGGAAACTTTC 11852 32 100.0 33 ................................ AAAACAAATTGGCCTTCTGACGTTTTGAAAAAG 11917 32 100.0 34 ................................ TGGTAGCGAAATTTATACTGCGTTACGAGGTTAT 11983 32 100.0 37 ................................ AGATATGCCCATGTTGAATTTAAAATATCCGCCGTGC 12052 32 100.0 34 ................................ CTTTATTGAAGAATTTGTTCGTACACAAATTAAT 12118 32 100.0 35 ................................ TAAAAAGTCCTTTATTGCTAAAACCATAATGACTT 12185 32 100.0 35 ................................ TGGTAGCGAAATTTATACTGCGTTACGAGGTTATC 12252 32 100.0 35 ................................ CCATTATCGCTAACAGTGAGCAGCAAGCCATGCGT 12319 32 100.0 35 ................................ GATACGTTAAAAGCTCGAATTGATGCCGGAGAAAA 12386 32 100.0 35 ................................ AAGGAAGTAGTAAGCACCCTATTCGGTTTATTTAC 12453 32 100.0 36 ................................ GTTGGTTATTTATAATACCAATAGAAAAGGTCCGAA 12521 32 100.0 34 ................................ TTTAATAATAGCAATTGGAAAAATTCTATAGCGC 12587 32 100.0 36 ................................ CGCTTTGACGTAAAACAAGCCGACCAAAACGCTGGC 12655 32 96.9 35 ...A............................ AGCACTTTTTTCTAAAGCTTTTAGTATATTTCCAT 12722 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 15 32 99.8 35 GTCGCTCTCTTCATGAGAGCGTGGATTGAAAT # Left flank : ATACGCATGAAACTGATAACCTTTTAAAAATCAAAGATAATTACAAAAAAATAATCATCACAGGTAGATATTATGAGGTAGAACAAGTAGAAGGTATACCAATTATTTATATTGTGGATTGGTTATTAGAAGAGTGATACCAAGGCAAATTGAAAGTAAAGAAACTTTTATCTTGCGTTCAGTATGGGCGGACCGTGGTAAGTATTTGCAATGACGGAAAAATTGAAGAAAGTTTGGTTTGGTTATTTCGATTTTATGCTTTATTTATTAGGAAAAAACTGGCAGAATAGAATTAGATAAATAGGAAATAATAATAATTATGTCTCTGAAGGAAATGATTTGTTATTATAATATGTAATTTGGCGCGAACCGAGGTCACACATAAAATACTAAGTTGGTTCGCGCAAAATTGGTACTATTTTATGAAAAATTACTCGCTTTTTCCGATTTATTAGGTGATTTTCTAAAATGAAAGTAGTACAAAGCCGCGTATTTTCCGC # Right flank : CTTTGTTATCTGCCATGAGTGTTTCTCTCCTTTGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCTTCATGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //