Array 1 71630-71944 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024564.1 Allochromatium tepidum strain NZ plasmid pAt1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 71630 36 100.0 33 .................................... GAAGCGCAAATCCTCCGACGAATCGAGTTCCGA 71699 36 100.0 35 .................................... AAGTCGGCTCGGGCATAGGTCAATCTCTCCATTCG 71770 36 100.0 32 .................................... CGCCCCTGAGACCTGGTTATTGGTGCTCTCGA 71838 36 100.0 35 .................................... GCAGCGACAGAGACCATTTCGCGCCACGCGGCAGT 71909 36 97.2 0 ..........................C......... | ========== ====== ====== ====== ==================================== =================================== ================== 5 36 99.4 34 GTCCGCATTGAGACCCGCTTTCGAGGGGATTAAGAC # Left flank : CCCATCGGCCTGCGCTTGGGTAAAGTCGCCGGCTTCCGCAAAACCGAGGTCGAACGCTTCGCCAAGCGCCACTTTGACCCCAGCGCCCTCATCCGCACGGATGGATTGTCCTGCTTCAGCGTCATCGCCGCGGCCGGATTCGAGCACCAGCCGATCGTCACCGGCGGCGGCCACCCCAGCATGGAGATTCCTGAGTTCCAGTGGCTCAATACCGTGCTGGGCAACGTCAAAAACAGCCTGCAAGGCTCCTACCATCATCTCAGCGGCAAGCATCTGCCGCGCCACCTCGCCGAGTTCTGCGATCGCTTCAATCGCCGCTTCGACCTCGCCGCCATGCTGCCGCGCTTGGGCAAAGCCGCGGTGCGTACACCCCCAATGCCGCATCGCCTCCTCAAACTAGCTGAGCTATGTTAATAATCAGGAACTTTTTTGCCGACTCTATGTGTATATCAGAGCTTGTCTATCAGATTGATTTTTCAAGCAAAAGTTATCCACAAGGG # Right flank : CAAACGGCACAGACTGCATCGAGAGCAACCTCGGTCCGCATTGAGACCCGCTTTCTGTAATACCTTCCCGTACCCTTCGCGGTCCCTTCAACACGATGGAGACCGTGAATGTCCAGATCGATCCGTTTTGCCCTGCCGTTAAGCCCGCATTGGGCGGCGGGGCCGTGGCCGGATCGGCACCGAGCGAGCCGGCACCCGTGGCGAAGACCGAGTCGACCAGCCGGACAACGGCTGCTTGCGGAAGCAAGCGTACCTGCAAGGAGATGAGCAGTTGCACCGAGGCGATGCACCACCTCAACAACTGCGGACTGAGCCGTCTCGATGGGGACGGCGATGGCGTGCCGTGCGAGGCGCTCTGTCGCTGACCCGGATGGAGGCCGCAACAAGGGAAGCGGCCTCCAGTTCATCGCGATGGTCTGGATTGGATCGGGGATAGCGCTGTAATCTCAGGCTTTCCGCATATCCGGGCCATCGCCGCATGTTCAACTCACGTCGTCTTT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCATTGAGACCCGCTTTCGAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 162718-165865 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024564.1 Allochromatium tepidum strain NZ plasmid pAt1, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 162718 28 100.0 32 ............................ GAAAGATCCGTCCGAACGGGCGAACCCCCGTC 162778 28 100.0 32 ............................ TGACTCGCTACTGCACGCCGGAAATGTCGCGC 162838 28 100.0 32 ............................ GGACCCCCCTACCCATCCCCCCCTAGCCCACT 162898 28 100.0 32 ............................ ATGGTGCGCCCCGTGTCTGTTGGTTAGTCGGT 162958 28 100.0 32 ............................ TGGAGCAGGATCAGACACCCAAACGTCACCGT 163018 28 100.0 32 ............................ GAGGAGGTTTCGGCCTCGGGTCGGATCTTTCG 163078 28 100.0 32 ............................ TAAAATTTCTCACATCAGGCGGTGCTCTAAAG 163138 28 100.0 32 ............................ GGGCGATGGCCTCTTGCATGTCATCCAGGGAC 163198 28 100.0 32 ............................ TTATGGCGCAGAGAGCGGCGGTTTTGGCACAT 163258 28 100.0 32 ............................ GAACGAACCCGCCTGATAGCGCGCTCCGCCGC 163318 28 100.0 32 ............................ GACGCGGCGCGGACGCCCCAAGGGCACGCGCC 163378 28 100.0 32 ............................ ATAGTAGGCCGTGAACGCCATTCTGCCGCCCT 163438 28 100.0 32 ............................ AAAATGCCAAAAAATCTAATGCTGATAATGAT 163498 28 100.0 32 ............................ AACACAAACGCCCGGCGCCCAGCCGGGCAGGA 163558 28 100.0 32 ............................ GCCTTGGCTCGCAGGTGTACCTCGGCCTTCCA 163618 28 100.0 32 ............................ TTGTTAGGACTGGCCCAATCGCCGAGGATCTC 163678 28 100.0 32 ............................ TAGGTCACACGCTGGGCGCGCTCTGTCGCCCG 163738 28 100.0 32 ............................ AATACGTCGTGACTGGGCGCTACCACGTCGAT 163798 28 100.0 32 ............................ TAAAGGCCGGGCGTAAATAACACATTAATCAA 163858 28 100.0 32 ............................ ACTGAGGATGGCCGAGCCGTCAATGTTCCCAA 163918 28 100.0 32 ............................ AACGCCCAGACCGAGCACTCGCGCCGTCTGCG 163978 28 100.0 32 ............................ ATTGCGCCGCCCTCGGACGTGGTGCCCTCGAA 164038 28 100.0 32 ............................ AGCCGCCCGCGAAAACTCCGGCTCGCCGGCAT 164098 28 100.0 32 ............................ ACCATGAATCTCGCATGGCAGCGGCTCCTGAA 164158 28 100.0 32 ............................ CCACGATGCGCATTTCGATGATCTGCGTAGGT 164218 28 100.0 32 ............................ ATTGCCCGATTTGTCAGTGGAGGCGTTCCCTT 164278 28 100.0 32 ............................ GTCGAGAGCGCCGCCCCGTTCGGCGTCGCCCT 164338 28 100.0 32 ............................ ACTTGGTCGCCATGTCTCGTGGGAGCATTTGC 164398 28 100.0 32 ............................ TAATTCCCATGAGTGGCACCAACGCGATTTCT 164458 28 100.0 32 ............................ GAGATCTCATTTTCTCCATGTGATCTCGGACA 164518 28 100.0 32 ............................ ATATTCCCCACCAGAATCTTGTCTTTGATCAA 164578 28 100.0 32 ............................ GGAATTGAAATGATGCGTGAAGTCTCGATCGA 164638 28 100.0 32 ............................ TCGCTGCTGCGCCACGAACACCACTGCCGAGT 164698 28 100.0 32 ............................ ATGCAGCAGGCGTCTATGTCCTCGGCGGATCT 164758 28 100.0 32 ............................ CCGGAGACGCAAGGATTTCAGCGAGATTGCGC 164818 28 100.0 32 ............................ TACTACGATGGGCAGCTCGCACGCGGCGCGCT 164878 28 100.0 32 ............................ CGGGTCGAAGCGTCCGGCCGGCTGATCGTCAC 164938 28 100.0 32 ............................ GCGACGCGCGCACACTCAGGCCCTACTGAATC 164998 28 100.0 32 ............................ ACAAACGGTAGGTCTTCCCATTTTTCTACGTC 165058 28 100.0 32 ............................ ATGGACGTGACGGGTCCGATCCGGACGTGTGC 165118 28 100.0 32 ............................ AAAAACTCACGGCTCTCGGACGTCTGGATATA 165178 28 100.0 32 ............................ ATAACGGACCCTATCAGTCATCGCGCCTCCAG 165238 28 100.0 32 ............................ CCGGGCCGATTTCGGGCCAAAAAGAGGCCGTC 165298 28 100.0 32 ............................ TCAGCATGAACAGTCGAAATCATGCCGATAGC 165358 28 100.0 32 ............................ GTGAACAACAGCCCCCCAAGGGGCAAATGCTC 165418 28 100.0 32 ............................ GCACAACGTGGCGCTACGCACCACGCCGGGCA 165478 28 100.0 32 ............................ GATGTGGTAATCGTCTGCTACGTCGCAGACGA 165538 28 100.0 32 ............................ GAGCTTTGGGCGTCCGGGGTACAGCGCAGACA 165598 28 100.0 32 ............................ AACAATAAATCCGGGGAATCCGCCGACTGTCT 165658 28 100.0 32 ............................ GCATTCGACCGCGATGCAGGCCGCGCGCATGG 165718 28 100.0 32 ............................ ACGGCTTGGGCTTTGACGCCTACCGCGCTATC 165778 28 100.0 32 ............................ GGAGCCTTTCTTCAGATGCGAAAGTGGTCATA 165838 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 53 28 100.0 32 GTTCGCCGCCGCGTAGGCGGTTTGGAAG # Left flank : TGGGCGAAGAGTCTTTATGCCAGCCTGGCGGCGGGATGCAAAATCAATCATTTTACAAGAAACGAGGGGCAAGGTAAAAAAGAAAGCATCTCAGATCGAGTCAATAGTTTTCTCGATCATGGAAATTATATTGCGTATGGATATGCGGCGGCTGTTCTCAACACGCTTGGCATTAGTTTTTCTTTTCCTATTTTGCACGGAAAAACGCGCCGTGGAGCACTTGTTTTTGATGTAGCCGATTTGATCAAAGATGCTTACGTTATGCCGTTAGCTTTTGAGTGCGGCTTAAATCTTAAGTCGAGCGATCAAGATTTTAGATCTGGGCTGATCGAGGTTGTGCATGAAGCTGGCCTAGTTGACCTTTTGTTCGACTTCGTTAAGGAGGTGGTTCATATAGACTAACAAAAACAAGTGCTTATGTGCTTACACAAAAAACGATCCTTTTTCGGACGTTTGTTTCGTATGGGGTTGTTTTTTTCATGTAAAATCGTATTCGAACG # Right flank : GTCAAGATTTGCGACCACAAACACTGCAATGTACGAATTTCGATCTTTTCTACCAGCCGGCAAAGCTGGTAGACTCGACGATCAGAAGGTGCGGCCCGGCAGGGGCCGGCCGCACGACTGAGTTTGGTGGTGGAGTACCGGAGGACGTCCGGGACGTAAAGCCTGTGGAGCGGGTGCCAATTGCCTACGTGCACTTCCCGCGTTGAAGCAGAAAAAGCGGTTCGCGAGGACCGCCCGGCCGGGGAGACGGGCCCTGGGCATCTCCGTCCTTTAGGGCGGGGAGGATTTTAGGGCGGGGAGGATGTCCCAAAAAAACGACAGACACAGAAACACAAAGGCCCACCGAAGTGGGCCTTACGTAAAAAACAATTGAGTGAACAGTTCTCTGATTTGTTTAGCCACGGATCAAAACTGCGCACTCACAACGCAAGGCCAAAGCGCAACCGGCTAAAGCCAAAGCGCATCAACGCTTGTCCGGCATATTGTGGCGATAGAACGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCCGCCGCGTAGGCGGTTTGGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 2504495-2511662 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024563.1 Allochromatium tepidum strain NZ chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2504495 29 100.0 32 ............................. CGGAGCGCGAAGCCCTGCTGGCCCGCCTTGCT 2504556 29 100.0 32 ............................. ACCATCTCCCGGGTCAGGCTCCAGCCTTTCGG 2504617 29 100.0 32 ............................. CGCCTGATCGACTCCCATGCAGCGATGGCTGT 2504678 29 100.0 32 ............................. CGCTTGAGTGCCGCCGCCGCGTGCGTGTCGAG 2504739 29 100.0 32 ............................. CGCCGGAAACGGCTCCGGGGCCTCCCACGCGG 2504800 29 100.0 32 ............................. CCGATCCATTCGACTTGAGGGGCTTGCGACTG 2504861 29 100.0 32 ............................. ATGGTCCGCGATCTCAGGAGCGCCCTGGCATC 2504922 29 100.0 32 ............................. AGTGTGCGCAGGTCGGCGTGCTTCACGTGAAG 2504983 29 100.0 32 ............................. CGCCAGCCCCAGGCGGACCCACAGATCCCGGT 2505044 29 100.0 32 ............................. CACCAGTCGAGCGCCCAGTCCGGCGTTGCCGG 2505105 29 100.0 32 ............................. CCCTTCATCTTCGCCGTCGATCTCAGCGAGCA 2505166 29 100.0 32 ............................. TTCATCATGGGTTGGCTCCGGTGGTGGTCAAG 2505227 29 100.0 32 ............................. CACCAGTCGAGCGCTCGCCCCGGCGTTGCCGG 2505288 29 100.0 32 ............................. ATTACTTGTCGGATGGTAGGCCATATTCCAGA 2505349 29 100.0 32 ............................. TATGACCGCCGCCGAACTGCTGCCGACCCTGC 2505410 29 100.0 32 ............................. GAACGGAAGGATCGGAAGGATTTAATCCGTGC 2505471 29 100.0 32 ............................. TTCCGGGACTCTTCCGGAACTGTTCCGGAATC 2505532 29 100.0 32 ............................. GTCGGCGGTGCGGTCTGGGCGGTCTGAGCGCC 2505593 29 100.0 32 ............................. TCGCCATAGCCGCTCACCTTTGCCACCAAAGC 2505654 29 100.0 32 ............................. TACCCTGAGCTGTCAATAGACGCTATGAGACA 2505715 29 100.0 32 ............................. ACACCGATACCCGCGCGCCCGGCGCGGCTGCC 2505776 29 100.0 32 ............................. CGGATCGTCCGGCAACTGGAAGAAGCCGATTC 2505837 29 100.0 32 ............................. GCGCGCGAGCGCGACATGGCGACTGTGGCAGT 2505898 29 100.0 32 ............................. TTGCGGACGATAGCCGATCTCTTTGAAGCGAG 2505959 29 100.0 32 ............................. CCTATAATTTTTCGGGGTTAGCAATATCGCTC 2506020 29 100.0 32 ............................. CCTGTTCCATCGCGCCAAAGGGTTCGTGGCGC 2506081 29 100.0 32 ............................. GCGTAACGTCCGAGGGCGGCGCAATGGCGTTC 2506142 29 100.0 32 ............................. CCAAGAACCATCCGTTCGGGGCGTGTGCCTAC 2506203 29 100.0 32 ............................. AAAGAGGAAGAACAGCGCCATCTCAAGGCTCG 2506264 29 100.0 32 ............................. GTGAGAAGGCCGCCGATGCCGCCGCCGCGCTA 2506325 29 100.0 32 ............................. CGAGATTGTAGGAATGAGTTCTCAGTGCTGGG 2506386 29 100.0 32 ............................. TCGGAAAGCTGGTTCGCTACCGTGAATCCGAC 2506447 29 100.0 32 ............................. ACCGCGCTCGCCGCGCCGGACTGCCGGAAATC 2506508 29 93.1 32 G...........................C GCCGTTTATCGTCGCGCACCTCGGCATGGATC 2506569 29 100.0 32 ............................. TCGCCATAGCCGCTCACCTTTGCCACCAAAGC 2506630 29 100.0 32 ............................. TACTTCAACACGCTACACGTGTAGCTTTCAGT 2506691 29 100.0 32 ............................. ATACTGCTCGATCCAGGATCGGACCTCACTGC 2506752 29 96.6 32 ............................A GGATTGCTATTCTTCATGCGGTTGATCGCGAC 2506813 29 100.0 32 ............................. AACCGCGACAGCATCGCGGCGGCACTACCGAA 2506874 29 100.0 32 ............................. AAATGTTGGCCGCGTGGCAACGCGACGATTCG 2506935 29 100.0 32 ............................. GGCACCGATCGGCAGCGCGCAACGCGCGAGAT 2506996 29 100.0 32 ............................. ATAACCCACAACCAGCAGAAAAACGACCAAAT 2507057 29 100.0 32 ............................. CTCTTTGAGACCGATCTGTTGGGCAAGGGTCG 2507118 29 100.0 32 ............................. AGACAACCATCAACGCAAGCAGATGAGGTTCC 2507179 29 100.0 32 ............................. AACCGTCCGAGATACTGCCCAAAAGCGATTTT 2507240 29 100.0 32 ............................. CCGCGCCTGCAATGCGGCACAATCCATCCACG 2507301 29 100.0 32 ............................. TCACAATTCCCGCATTTATGGGGCGACATTCC 2507362 29 100.0 32 ............................. GATTCGCTCGCGCTCGCGTTGATCGTTCACGA 2507423 29 100.0 32 ............................. CCGGGCGGTGTTTTTATTCAGACGCCGCTTCA 2507484 29 100.0 32 ............................. ATCTACCGTTCGTAGTGAATGAAGGCGCATTC 2507545 29 100.0 32 ............................. ATACCAGCCGCGAGTGAAAGGAGGTAGATCAA 2507606 29 100.0 33 ............................. TGCGGTGCAGGCAAGCATACATCGTAGACATTA 2507668 29 100.0 32 ............................. ACGGAGCAGGTGGCGATCTACTACTACGACGC 2507729 29 100.0 32 ............................. TGTGATGGGTAGCGGTTTCAGCATCCTGAGCA 2507790 29 100.0 32 ............................. CTATCGATCGCCTTGAGGCGGCTGTGAAGATT 2507851 29 100.0 32 ............................. CGAGCGGCCCTTGATGTGGTCGGTATACGCTT 2507912 29 100.0 32 ............................. ATGGAGACCGCCTTGCTGTCGCTCATGCGCAC 2507973 29 100.0 32 ............................. CCGGGGACGTGGTGTCCCTGCCTGAAGTCAAG 2508034 29 100.0 32 ............................. TTGGCGACCGGGTACGAGAGCATCGGGCGACG 2508095 29 100.0 32 ............................. ACAGGTCGAGTTGGGTGGTCTTTTGCGTGCGC 2508156 29 100.0 32 ............................. CGACGTGGGACGTTGGCGCATGAGCTGATTCT 2508217 29 100.0 32 ............................. TTCAAGTTCATGGATGTGTCCGTCAGCAGATC 2508278 29 100.0 32 ............................. GCAGGATAATGCACTCACGCCACCTCCCCACG 2508339 29 100.0 32 ............................. CAGCCAACGCGCGGTGATGCGCTCGGGCATCA 2508400 29 100.0 32 ............................. GCCGGGCGTAAATAACAACGTTAATCAACAAC 2508461 29 100.0 32 ............................. CCGGCAACGGCCCAGGAGAGACACGTTTCTGG 2508522 29 100.0 32 ............................. CGAGACTGGTGGATAGTCGCGCGCCGGCACGG 2508583 29 100.0 32 ............................. ACGCGCTGGTTGCTTTTGCGGCCTCTAATCAC 2508644 29 100.0 32 ............................. CTGACTGGCCTTGACGATCGCGCTCATGAGGC 2508705 29 100.0 32 ............................. ATCATGGCCCAGCATCAATGCGCTATTGATCC 2508766 29 100.0 32 ............................. GCGCGCAGATGGGTCGTGACAAGCGCCGGTTC 2508827 29 100.0 32 ............................. AAAAAACGATGCCGCCCACAATCGCATTCATA 2508888 29 100.0 32 ............................. ATCGAAACATTGCGCCAAGGGATCTGGAAGGA 2508949 29 100.0 32 ............................. CTCTATCAGGCCCGCACGGGTGGATTCTCCAG 2509010 29 100.0 32 ............................. CCATTCAGGGGCCGCGTGGATTTCGGCCAGGT 2509071 29 100.0 32 ............................. AATCACGCAGCCATCGCTGGAGGCGGCAGCTA 2509132 29 100.0 32 ............................. GACGACTGGACCGAATACGCCAACGTTTGGGG 2509193 29 100.0 32 ............................. CGCGGCAACCGCTGGATGCACCCGGAATCCAC 2509254 29 100.0 32 ............................. ATCCGCGCCCGGTTCAGGCGCTCGACCACATA 2509315 29 100.0 32 ............................. CAGCTCCCCAGAGTTCAATCGTGCGGGCGATC 2509376 29 100.0 32 ............................. CTGAGACACGAGACACCCCCCAAGAGAAAGGC 2509437 29 100.0 32 ............................. CACGCGCGAGCCGCCGAAAGCCCAGACAGGAA 2509498 29 100.0 32 ............................. TCGAGACCGAGGATCTTGACGTCCTCGATGGT 2509559 29 96.6 33 ............................A GCAACCGCCAGTTGTGCTGTTCTGGCTCATTTC 2509621 29 100.0 32 ............................. GCATGGCGTGGCTGGCCAGCATGGACGACGTC 2509682 29 100.0 32 ............................. CTTTTCGGCGTCCGTCACATAGGGCGATTGCA 2509743 29 100.0 32 ............................. CTGCTGGCGCTCGACTGGCCGTTACCGGCGAT 2509804 29 100.0 32 ............................. GCCCGGCTGTCGTCTCCGCCGGCGCATGTCGC 2509865 29 100.0 32 ............................. CCCGATCTGGTCGCGCTGCTGACCACGGCAGC 2509926 29 100.0 32 ............................. GATTGCTTACAGGTTGCTCTGTTGACAGTATA 2509987 29 100.0 32 ............................. ATCCCGAGACCATGCGCCGGATCTGGACGGAT 2510048 29 100.0 32 ............................. CGACATCTCGCCGGTCGAGATCGCGATCGTTC 2510109 29 100.0 32 ............................. TGCTGAGGACTTTTTCTGCCTGGACGAACCGT 2510170 29 100.0 32 ............................. CGATCCGATCTGCGCGCACTTCGGCAAGTACC 2510231 29 100.0 32 ............................. ACCTACCGTTTGTGGTCAGTGAGGGCGCGTTC 2510292 29 100.0 32 ............................. CCCGCCAAGCAGGCACCCAAGGCCATGCAGAC 2510353 29 100.0 32 ............................. AAACCGATGAAATGCAAAAACTGTGGTAGCTA 2510414 29 100.0 32 ............................. ACCCATCATGCCCGGACGGACGTAAATAAAGC 2510475 29 100.0 32 ............................. CCGCCGATGTTGCACTGAATGGGTTGCTGGTT 2510536 29 100.0 32 ............................. CTCGCGAGGACAAGCGGCTCGAAATCGTCTGC 2510597 29 100.0 32 ............................. GCGTAGAAACGAACAAACTCATCGTACCTGGG 2510658 29 100.0 32 ............................. GCATGGGGTAAAGCGAAGCATTTCCGCGAAGG 2510719 29 100.0 32 ............................. TCGTCTCCCGGTTTCAGGCGCGCGCGGCACTG 2510780 29 100.0 32 ............................. CCGATTGCGTGATGGCAAAACAGATCACCGCG 2510841 29 100.0 32 ............................. CACGCACACGGCTATGTGCTCGCGTCGGTGAC 2510902 29 100.0 32 ............................. GTTTCGACCTCATTTTCGGTGCGCACAGCCTT 2510963 29 100.0 32 ............................. GCCGAGAGCGACCCCGACTGGATCAGTTATTG 2511024 29 100.0 32 ............................. CTCCGGCGTGCCGCAGGCAACACGCCGATTTT 2511085 29 100.0 32 ............................. TTCATCCGGTTCCATTTCGGCCTCCATCTGTA 2511146 29 100.0 32 ............................. ACCGCCATCACCGTCTCGACGAGATCGGTTTC 2511207 29 100.0 32 ............................. AATAGCGACCTTTTCCTCGGTCGGCGCAATAG 2511268 29 100.0 32 ............................. CCCTGCTGGCCCGCCTCGCTGAGATCGATGCC 2511329 29 100.0 32 ............................. GCCAATCTTGCGCGGCCAACCGATCCCATGCG 2511390 29 100.0 32 ............................. GTTGCATTGAGATTCGCGACCAGTGCCGTTGC 2511451 29 100.0 32 ............................. GCAGCGCTCCTGGCCGGCAAGCCGCCGTCGCC 2511512 29 100.0 32 ............................. CCCGATCCGGTTCGGGATCGCGTGGGGTTCGT 2511573 29 100.0 32 ............................. GTCGTGCAGAAATTGGGCGTGGCCGTCAGTAC 2511634 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 118 29 99.9 32 ACGTTCCCCGCGCTCGCGGGGATGAACCG # Left flank : AATCATTCCGATGATCGAGGAGGTTCTGTCCGCCGGTGAGATCGAACCGCCCAAGCCGGCCCCCGAGGCGGTCGCACCGGCCATCGACGACGGGAAGCCTTTGGGCGATGCTGGTCATCGTCACTGAGAACGCTCCGCCGCGTCTGCGCGGACGGCTCGCGGTCTGGCTGCTGGAGATCCGCGCCGGGGTCTATATCGGCAGCCCCTCAAAGCGGCTGCGTGAGTTCATCTGGAATCAAGTGCTGGAGGGCGTCGAAGATGGCAATGCGGTCATGGCTTGGAACACCAACACGGAGTCGGGCTACGATTTTCTCACCGTCGGCAAGAATCGGCGTGTTCCAGTCGATTTCGATGGTTTGCGGTTGGTCAGTTTCAAGCCGCTCGATGAGCCCGACAAAGCTCTTTGACAATCGAAATCGCGCCCCTTTGAAATGGGGTATTTTGTTGGTAGATTTCTCAGCGTCTGATTTCTTGTTCTAGATCAGGCAAGTATGGGAAGT # Right flank : GCCTGCTGATCGCTCAGGCTCAGTGCGAAGGCATGCAAATCCTCACCTACGATCGACTGTTCCAGGACTATCTGCCGGAGACGCGACTCGTGCGCTCCAGTCCGCCGGCCAACGACCCTGCATAACGCGCTTCAAATCGCGCCCGAACCTCAACCCAACGCCTCCGGCGCCGCGATCAGCGCCATACGCACCAGATCGGCCAGCGACTCGGCGCGCATCTTCTCCATCACCCGCGCGCGATGCGCCTCGACCGTCTTGGCGCTCACCCCGAGCGCGGCGGCGATCTCCTTGTTCGACTTGCCGTCCGTGACCATGGCCATGACCTCGTGCTCGCGCGGCGTCAGCTCGGCCAGACGTCTGGCGATGTCGGCCCGCGCCAGGCGATTGGCGCGTGTCTTCTGATCATGGTCCAGCGCGTTGCGGAGGCTGCGCAACAGATCCTCGTCATGGAAGGGCTTTTCGATGAAGTCCATGGCTCCGGCCTTCATGGCGCGCACCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACGTTCCCCGCGCTCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3166943-3168609 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024563.1 Allochromatium tepidum strain NZ chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================ ================== 3166943 37 100.0 32 ..................................... CGATGATAAGATCCTACACAGTGCTGCATATA 3167012 37 100.0 32 ..................................... TAAAGTAACTCCCATGCTTTTCTAAACTTAAC 3167081 37 97.3 31 A.................................... AAACTATTTTGCATATTGACTTTAGCTAACT 3167149 37 100.0 32 ..................................... TAATTTTGCTGGAATAATTAAAATTAGCTGGA 3167218 37 100.0 31 ..................................... CTTGCCGCGCCCCGTGCCGGCGAGTGCGTCC 3167286 37 100.0 31 ..................................... ACGCAGCGCGCACTCATCGCGCGGCTGCTGA 3167354 37 100.0 28 ..................................... CCTTGCCAGGGCTATCGGTATTACCCTA 3167419 37 100.0 31 ..................................... TTATTTACCCTATGTTACTGATGGAGGTATA 3167487 37 97.3 32 A.................................... GCATCTTGTCTTCATATTTCACGACGACATAG 3167556 37 100.0 31 ..................................... TAACTCCCACGCCTTCTTGAATCTAACAATA 3167624 37 97.3 30 T.................................... GCGAGCGCCGAAATGTCCGCATCAGAATAT 3167691 37 100.0 32 ..................................... CCATCCGACAAGTAATCTTTTTCCACACATAA 3167760 37 100.0 30 ..................................... TATTAGAACTACCGATATTACGGGCAATAG 3167827 37 100.0 32 ..................................... GCCCCATTCTTAAGGGTATGAATCTTCATAAC 3167896 37 100.0 32 ..................................... CATTAGCACTAGTAGCTCCAGTGCCACCATCA 3167965 37 100.0 30 ..................................... ACAAATAATTCGTCACCGCTGCCTATATGG 3168032 37 100.0 30 ..................................... ATGTATTCTTTCAAATAAATCATTTAAAGT 3168099 37 100.0 29 ..................................... AAATATTCAACATACTGTTCCGGATAATG 3168165 37 100.0 32 ..................................... GCTGGAAATCTCCAGCATTTCATTAGCTACCG 3168234 37 100.0 31 ..................................... ATGAAGAGGAGCATAGTAAACTCTGCAATGG 3168302 37 100.0 31 ..................................... CGAAGTAAGCGCTCTTTCCATCCATGGAAAG 3168370 37 100.0 30 ..................................... AACCTAGCCTTGGTGGTGAATGTGGCCCTC 3168437 37 97.3 31 C.................................... CTCCCCAATGAAAAACATTTTCGCCTCCCGC 3168505 37 100.0 31 ..................................... CAAAGCACCTAAAGCCATTAATAGCTATGGT 3168573 37 91.9 0 .................................TG.T | ========== ====== ====== ====== ===================================== ================================ ================== 25 37 99.2 31 GACTCTTCATTTCGACGTGCAGAGACACGCTGGAAAC # Left flank : AACGCCTGTGGAGACACGAGCAGCGGTTGCGCACTCGGCCCAGGAACCCCCCGAAGCGACTCATGGGCGGCTCAATGCCGCGCCTCGTCGCCGTAGGAATCTCCGGCCTTCAGGCCGGGGAGGATGTCAAGGCGTCGAGTACCCGACGCACGGCGCGCGCTCGGCGGGAAGAGCCGATGTCATAGGCTACGACCGTCAACCGAGATGGCGGCAGGCCGGCAATCGTGATCAACATGGAGCACCTCCTGACGTTCGCTGGGTGGGTCGGGTAATGGGGCGTGATCGTTTTGCCGCCGTCACGCCTTGGGTGATAGGATTGAGGGAGCCGCGTCCAGGCGGCGCTCATGGAGTCCTTTCATCGTCTCGTAGGACAAAAACAGGCCGCTTTCACCGAAAATCCGGTAACTCGGGGAGTCGCCGATGCTGGGGATGATGCCCAGGCGCTCGAATTGTCACGTTCAACCAACTGACTTGAAAGTGTTTTTGCGTCCATTGCGCGG # Right flank : TTTTTCGATCAGTAATTCCCTGGAAAAGGCTTTGATCCAATGGCCAGTGATCTGCCCCCTTGGATCCTGATGAAGTTCGTGCTAGCCTCCCCATCTACGTATGATTGACCGGCGCCTCCTTGGGACATAACGCGGATATGGATTGGGAGAGCACGATGGCTCTGTCGCTTTGGATTTCCCCGGACTCGCAGTACGGCCTGCTCGCCCCCGGCGAGGCACGGACAAACACCTACCAGCGCGCTGTGGAGCAGGCACTCAAGCAGCATTTGTTCAAGGATCAGGACGCCGGAGCTCCCACGGCAGCCGCGCCGCCCTACGACGATGGGCTGCGCCAGTTCAACGCCGCCCTGACATCACCGCCGAGCTTCGGGCGCGACCGCCGGAACGCTGCGCGCCTGTGGCAGGCACTGTTGGCGAGCGACACCCCACAGGAACACCCTGACGCCATAGTTGACGAGCGCATCGAGGGTCTGTTCTGTCTCGCGCTGCATAGCCTGTGC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACTCTTCATTTCGACGTGCAGAGACACGCTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //