Array 1 36537-36900 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTWF01000019.1 Ruminococcus sp. AF25-19 AF25-19.Scaf19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 36537 32 100.0 34 ................................ TAGTGTAGTAAAGTGGTAAAGCGGTGAAGCGAGT 36603 32 100.0 36 ................................ CAATTCTCCCAAACAGATAGCGGGCTTCGGCTCAAA 36671 32 100.0 34 ................................ TTGATACTGCAGGCTTAAAGCGTGGAGATAATAA 36737 32 100.0 34 ................................ CCGTCATTGTTTGTGTGGGGTATTTATCCGTATC 36803 32 100.0 34 ................................ GACAGCGTCGTCTGTCACCTATCTCCGCTCTAAG 36869 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 100.0 35 GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Left flank : GGCGAGCTAGATGAGTACCCGAACTATTTGCTGAAATAGAGGTGATATAAATGATGACCTTAGTAAGCTATGATGTATCAACAACAGATAATAAGGGTAAAACAAGGCTGAGAAAAGTGTCGAAAGAGTGTCAAAATTATGGTCAGCGAGTGCAGAACAGCGTGTTTGAAATAGACGTAGACTATGGCACTTTTCTGAAAGTGAAAGATAAACTTCTGAAAATAATAGACCCAAAGCATGATAGTCTGCGAATATATTACTTAGGCAACAATTGGAAGCATAGAGTAGAACACTACGGCACCAAAGAGACCTATGACCCCGAAGGCGTCCTAATATTTTGACCAGCGTACCCCAAGTGATCCACAAATCCCTAGTAAGTTCGCATGAAAATGCCATGCTATATGTGAATGAATAGTGAACAAAATCAAACCGATACCCATTAAATAAAAAAATAAGTCCGCATCACGTTGAGCAAGCACCAGATATACACAACATCAAGG # Right flank : CCAATATTTTCATTTCTAGTTATTAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 15742-15976 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTWF01000029.1 Ruminococcus sp. AF25-19 AF25-19.Scaf29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 15742 36 100.0 31 .................................... CAACCCCGTTATTATAATTTCACCGTTAATT 15809 36 100.0 30 .................................... ATGACCGATGAATTCGGTACATAGTCTTTG 15875 36 97.2 30 ...............A.................... TCTAGCATACTACTTTTGAGATTATATTTA 15941 36 86.1 0 .........................C...G..GT.G | ========== ====== ====== ====== ==================================== =============================== ================== 4 36 95.8 31 CTACTACACTGGTGCGAATTTGCACTAGTCTAAAAC # Left flank : ACGCCGCCCTCACGCTTGGGCAGAAATGTGCTTGGGGGTATGAACATTTTTATCACCTCTTGTATCCATTATATCACAAATGTACTTTTTGTCAATATCATAGAAAATTATTTTGTTGAAATTGTGATATAAATGCCGTAAAAACGTTATAAATGTGCAAAAACATAGACAAAAAAGTTTTTGAAAATTACACTTTTGTTGACGATGATAAGGTGGTATAATGTATACAGAACAAAGGACAGGAGGTGATAAAAATGGGAAAGACGATCTTTACGGCTATCATTGTAGCTGTACTTGACTGCGCTATCGCAGCTGTCAAGGAGATTGGGGAATGAGATGAAATAACAACAGACGGGAGGTGATAAAAATGCTTTATATAAAATAGCCACTTTCTATTGACATTTGTGTCTGAAAATGGTATAATATATACATTAAAGCGTCGATAAAATAAGTTTGGTGTTTTATCACAGAATATCATTGATTATTTTGTCAACTTTGAC # Right flank : GGTCAAAGTTTAACATCAAAACCAACAAATAAAAAAATCCCTTAACGCTCAATGCGCTAAGGGATAACTAATATAAGGGGTAATATTTATGGCAAAAAAGAATAAAATGAAGCCTAGAGAGCTGCGTGAGGCTCAGAAAAAAGCCAGACAGCTCAAAGCGGCTGAGATAAATAATAACGCTGCTCCTGCGATCGCTGCCATGCCTGCTGCAGAGGTCATTGCTCCTGCGGCAGAGAAGAAAAAATCCTCCGTAAAGGCGGCAGGAATGAAGTCTATTTTTGTCAGCGAAAATAAAATGTACATAACCTCTTTCGGCAAGGGCAATTCTGCTGTGCTTGAATATGAGGTGGATAAGGTGGATAATAATGTCTACAACCAAACTCAGCTTTCCTCTGAGGACAGCAGCAATATCGAGCTTTGTGGTGTAACCAAAGTAAACATCACTTTTTCAAGCAAGCATGGCTTGGAGAGCGGAGTGGAGATAAGTACTTCAAACCCTA # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTACTACACTGGTGCGAATTTGCACTAGTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 2668-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTWF01000057.1 Ruminococcus sp. AF25-19 AF25-19.Scaf57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2667 32 100.0 33 ................................ GACCATAGGCGGTTGATAGGTTTCGGCGGGTGC 2602 32 100.0 34 ................................ ATCCGCCGTGTACATATCTTAGCAACGCAGGAGC 2536 32 100.0 33 ................................ GCCTGTGATTATAGTATACCATGTTATCTAGCA 2471 32 100.0 34 ................................ GACTTTTGTCGGTCGCCTATATCCGAATAGGTGC 2405 32 100.0 34 ................................ GCTCATGTTATCAGTTCCTTTCAAATTTTATTTT 2339 32 100.0 34 ................................ TTACACCTAGCTGCATATCTGTAATTTGCGCCGT 2273 32 100.0 34 ................................ TGAACGTTCCATTGCCGTTGTTGATTTTCAACCC 2207 32 100.0 34 ................................ CTCTTGGCAAGAAGCCGTCTATGCGTGTGCTGTG 2141 32 100.0 33 ................................ TTGTTACCTTCGCCTGTGGCAATGGCGACGTGA 2076 32 100.0 33 ................................ GACTAGCGCAGGCAGATTTTCTGTTAATGAATC 2011 32 100.0 36 ................................ ATTCCTAGCACAACATACCCATTCTTTATTCCCCAG 1943 32 100.0 33 ................................ ACCACCCGTCGGCACTGTTTTCTGATATGCCGT 1878 32 100.0 34 ................................ TTTATTTTTTTTGTGTTATTTTAAAATATGGTTG 1812 32 100.0 33 ................................ ATCTAACGTAAAATCATGTTTACAACAGTACAA 1747 32 100.0 35 ................................ TACTGGTCACAAATAAGTTTACTGCTGACACTAAA 1680 32 100.0 33 ................................ TAAAATCCATTCTAACGGCTGTCAAGTATAGTT 1615 32 100.0 33 ................................ AAGATTATTTGCGAAAATCTTCATTTTCCCGTC 1550 32 100.0 33 ................................ ATCTAACGTAAAATCATGTTTACAACAGTACAA 1485 32 100.0 35 ................................ TACTGGTCACAAATAAGTTTACTGCTGACACTAAA 1418 32 100.0 35 ................................ TACTATGCTAAAGTGCCAAAGCAATGAAGTAGACC 1351 32 100.0 33 ................................ ATCTAACGTAAAATCATGTTTACAACAGTACAA 1286 32 100.0 35 ................................ GCCTCTTGGTAATTAGTACCAGTTGCAAACCCACT 1219 32 100.0 33 ................................ TGGTCGTCATTGTTTAGCACTCCTTTCCATTCT 1154 32 100.0 34 ................................ CCAATATTTTCATTTCTAGTTATTAGAAATTCGC 1088 32 100.0 34 ................................ TTTTTATTTCGGCACGAGTAATGGCACGGCAGGC 1022 32 100.0 34 ................................ TTATTTTTTCCAAAACTGAACCGTATTCCCAGTC 956 32 100.0 33 ................................ GATTTGACCTGCTCATAGCCGTATGATACCTTA 891 32 100.0 35 ................................ TACTATGCTAAAGTGCCAAAGCAATGAAGTAGACC 824 32 100.0 33 ................................ ATACCATTAAAAGGGTTATTTTGCCAGCCTGTA 759 32 100.0 33 ................................ ATACCATTAAAAGGGTTATTTTGCCAGCCAGGA 694 32 100.0 34 ................................ AGCAAACGCAACATTGTCAGCCGTTCCGCTACCC 628 32 100.0 34 ................................ ACGTTTCATATTATAGTTTGCGTTCACGCCTATG 562 32 100.0 34 ................................ TATTATGTTAAAGTGCCAAAGCAATAAAGCAGAC 496 32 100.0 34 ................................ ACCTTTACCTCTTCGCCGTCATTGAAACAGTCGC 430 32 100.0 34 ................................ CGGCTTAAACTGGCGAACTTCTGCCGCGTTAGGC 364 32 100.0 35 ................................ TTCCATGAGTGTGGCGGTGACATTCAAGCGGTTCA 297 32 100.0 35 ................................ GACACAGAAACTGGACAAGCAGATAAAGCAGAGCG 230 32 100.0 34 ................................ AGTACAAACAGAGGAAGAGCCACCAAAGGAAGAA 164 32 100.0 34 ................................ AGTAAAAAATGTACACTCACCTAAATCAATCAAG 98 32 100.0 34 ................................ AATGACGGTGAAGAAGTAAAGGTAAGATTTGTCA 32 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 41 32 100.0 34 GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Left flank : GTGAAGAAGTAAAGGTAAGATTTGTC # Right flank : T # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 28-979 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTWF01000018.1 Ruminococcus sp. AF25-19 AF25-19.Scaf18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 28 32 100.0 34 ................................ TGTATCACCGACACTTGTTTGATGACCTAAAAAT 94 32 100.0 32 ................................ ATTAAAACGAGTGAAATACTGTTGTGCATTAA 158 32 100.0 34 ................................ GCACAATTATTAATGCAGGGGTTGACTTTAACGG 224 32 100.0 34 ................................ GTCCATGTAGCCAATGATAATTTCAGGGTCGGTA 290 32 100.0 34 ................................ GACAGAGATAAGAACCCATGTGATATCGGTTACA 356 32 100.0 33 ................................ TAAATGGAAATTATGGGGGCTATCCTAACGAAT 421 32 100.0 33 ................................ TGATTTTCTCCAACACTGAACCGTATTCCCAGC 486 32 100.0 35 ................................ GAAGGAAGCAGTTAAAAAAATCAACGCAATGTTCA 553 32 100.0 35 ................................ GACTTCTTCAAAGCCGAGAAGGATAAAATGTCACG 620 32 100.0 33 ................................ GTTCAGACTTAGTGCGTCTCGCAGGCGCTCATA 685 32 100.0 34 ................................ TTGCCGCCTGCTCTGCAGGAATGTTGTTCAGCGT 751 32 100.0 32 ................................ GGTACGATTGAAACAGCGATCCGCAGATTTAA 815 32 100.0 34 ................................ ATACAGAGGGCTACGAGGACGGAGAAATCAGAGT 881 32 100.0 35 ................................ CTGAGCTACTACGTGGCGCAGACCATAGAGAAGCA 948 31 81.2 0 ..............T..AA.A..-....T... | A [975] ========== ====== ====== ====== ================================ =================================== ================== 15 32 98.7 34 GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Left flank : GTGAAGAAGTAAAGGTAAGATTTGTCAG # Right flank : TCTGTATGTCACGGATATTAAGATGTGTTGTATATATTGTCTTTTCTTAAGTGTTGAATTTTTTACTATTGCATTGTGATATATCGTAATGAAAATATAATATTTTATTCAAATTTCTGCTTATGTGTACAAAAATTTTCCCCACAAATAAGATAATTAGTGCTATAATAGTCTTTACAATAAAATGTTTTCATCAAGGAGGATAAAATAATGAGTTTGAAAGAATATGTAGCTTTGTTACCTACATTGGATAAGGATACTATATATACGAGTATCCTTATTTTTGTAGTTGTAAGTATTTTTAAACTGCTTCAAAAAACAATAATTTTGGATATGAACAAATGTGATCGTCAAGCTGACAAGGCTATTAAAAAAATTGTTGATCTAATAAAATTGTTAGATAATCCGGTTTTAGATTACAGCAAATTTTATGAAGCATATTTATTCGTTGATATTAAAGAAAGAAAAGAGTTAAAGGCTTATATAGATAATCACGAAAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //