Array 1 24636-25386 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLJ010000014.1 Lactobacillus gallinarum strain An447 An447_contig-110_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 24636 28 100.0 33 ............................ AAGATTGATCACACACGATACAAGCACATCTCA 24697 28 100.0 33 ............................ TAGATATGATCCGTGGTCTAATGGATGCTGATA 24758 28 100.0 33 ............................ GCTACACAACGGATGAAATCAGCCTCATCTTTA 24819 28 100.0 33 ............................ AAAATTCTGCTCGAGCATTAACCGCGGTTGTTG 24880 28 100.0 33 ............................ ACCCCGTTGTCGCTGTTCCAAGCGTTATTAATA 24941 28 100.0 33 ............................ GAAGTTGTTCAAACTGGTATCCTCGGTGTATTG 25002 28 100.0 33 ............................ TGCTTCAACTTTAGTCTTGAAACCTCCCTTTTG 25063 28 96.4 33 ............T............... CAAATTGCACCTGAAAAATATTCTTTCGTTGGA 25124 28 100.0 33 ............................ TTAACTGATTCTGTTTGAGGATTGGTATCGGTA 25185 28 100.0 33 ............................ GCCAAGGTTTGTTGCATAGTGGCAAGCATCTTG 25246 28 92.9 24 .........................G.G CTAAGAAACTCGCTGAGCACATCA Deletion [25298] 25298 28 100.0 33 ............................ TTTAATTGCTTGAAAGTAATCCTGATCTCCATA 25359 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.2 32 GGATCACCTCCACATACGTGGAGAAAAC # Left flank : TTTCTTGAATATAAGGCATTTGTTCAAGTAACTCCTCTGGAGTTTTCGCACGTCCACCTTTGTATTCGCCGTACATTTTTGTTCTAAAAGTGACTTTTCCTGCATCAAAAGCTACCAATACGTGGGTCGGATCAACGTCTTTTAAAAGGACATCGAGCATGTTCTTAAAAGCGTAAATGGCATTGGTATGCAGGCCGTCCGGACTCTTGAAAGATTCTAGTTGACGATAAAGAGCGTAAAAGGCTCTGAAAGCTACAGAGTTACCATCGATTAGAAGTAATTTTTTATCTGCCATTTTATTCCCCTTTTTAATATTTGTCTCTATACTTACTTATCTATTTTACCAGTTTCAAGAGCAATCTTTTAATAGGAAGTTTAATGGAAAAGAAAAAGGCCCCGATTATAGGACTTTTGCTTGTGATTTTTCTTTCACTGCGTCAATTTAGCTCCACTTTTGTGAAGAAAATAAAGTTTCAAATCGTGTACCAAAGTTATTGTAA # Right flank : CTAAAAGATTGTTGATATAGAGCCATCTAATAAATACAAATAACCTATTTTTAATCACTTTTATTTAGCAACTAATAAGTATTTATTACTTATGATTAACACTATAACAATCTTTTAGCTAAATCTAAAGTTGCGGTAGCATCCCCTAAAGAATTATGAGGATGGTTATTCTTAATTTTAAAATAGTCCAAAACAGTTTCTAACCGATAATCATCAAGAAATACATTTGCTTTCTTAGCGACAGGCATCATATCCTTAACTGAATTAACAATATGTTCCTCGCTATTTTCATCTAATGAACGATTTAAAAAATCAATATCAAATGAAACATTATATCCAATGATCAATGACTCACCAATGAATTTCTTTAAATCCTTTAAAGCCACTGAAATTTCTACACCATTTTTAGCAAGTACACCATCACTTATACCTGTCAGATCTGCAATTTTCTTAGGTATTTTGGTTTTGCATTGTATTAGTCGATAAAAGTTTTCCCGTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCACCTCCACATACGTGGAGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 37968-35865 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLJ010000014.1 Lactobacillus gallinarum strain An447 An447_contig-110_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 37967 29 100.0 32 ............................. ATCAAAAGTTACTTTGGAGTTAAAAAACTTGG 37906 29 100.0 32 ............................. ATTATACTCGCCACTACCTACCCAAGAGCCAA 37845 29 96.6 32 ............................C ATATTATCTCCTTATAAAAAATAAGAGTAGTC 37784 29 100.0 32 ............................. ACACTAGTAACGGTCATATACAAGGCATTACT 37723 29 100.0 32 ............................. CAACCTCCACATCGTCAAGATCACAATGAGCG 37662 29 100.0 32 ............................. CAATTTTTTAAACTGGCAAGAATGAATGATGA 37601 29 96.6 32 ............................C CAAAGATTTGATCCTTGCTCTTCTTCTGCTAT 37540 29 100.0 32 ............................. AAATGATGACGGCAATTACAGAGTGAGCTTTG 37479 29 96.6 32 ............................C CATTTGATCCAGATGACCAGGCATATTAAACG 37418 29 100.0 32 ............................. GGCAATGAATTTGATAATAACACGGTCAGAGG 37357 29 100.0 32 ............................. GCTGATGCAAAAAGATGGCCACAAAAACCGTA 37296 29 100.0 32 ............................. CAATAATTTAGCTGATGACCTAAAAGAAGGTC 37235 29 100.0 32 ............................. GAAAAATGCTGTGATCGTAAATGATGATGAAA 37174 29 100.0 32 ............................. GGAGACAGGTGTATTTGGACGTAACTTCTCAG 37113 29 96.6 32 ............................C ATCATTAAGCATGTATCCAAGTTCCTTTTTTG 37052 29 100.0 32 ............................. AGTACGTTTCATACCAGGAATAGTGGCGGTGA 36991 29 100.0 32 ............................. TATGCATGCGCCTCATGCTGCCGTTACATCAT 36930 29 100.0 32 ............................. GTCCGATATGCGGAAAACCTATCAAAGTTCAT 36869 29 100.0 32 ............................. GCTTCTTCATTTTTAAGCGATGCGAGAAACTG 36808 29 96.6 32 ............................C ACATCTCGAATTGCATTCCACACGGAAATAAA 36747 29 96.6 32 ............................C TGAGCCAAAGTCTAAACCATCATGAAAATTAT 36686 29 96.6 32 ............................C AATATCGGTTACACTCATTCCGTAGCTAGTAA 36625 29 100.0 32 ............................. AGTTCTAAAGTTGATTAAGTGATTGCCAAAGT 36564 29 100.0 32 ............................. AGGAATGTATACAAGCCCCGATTTGAGTTTGA 36503 29 100.0 32 ............................. CGTTCTTTTTTCATGTTATTTAAGCTCGATAA 36442 29 100.0 32 ............................. CACTTCTTTTCTACTTTTTAGCTGCAAGTGCA 36381 29 100.0 32 ............................. GGCTTATAGTTGTCCTGCTCAATGATTAAACC 36320 29 100.0 32 ............................. ATTTAAGTGAAAACTTTTAAAGAATTAAATAG 36259 29 100.0 32 ............................. AATGCCAAACATCTCTTGGTCATAAACATTAC 36198 29 100.0 32 ............................. GTTAAAACACCTAAAGAAGCTATTAAAAAGAT 36137 29 100.0 32 ............................. AATCTAAGTCACCAACCATTTTAGGTATTTTG 36076 29 100.0 32 ............................. GACACCAGAGCAAAATAGAAACGGTTTTCCGG 36015 29 100.0 32 ............................. GTGCTTGGCGTATCTATTGAGTACCTGATGGG 35954 29 100.0 32 ............................. AGCAATGAGTGAAGAAAGCAAAGAAACATACT 35893 29 93.1 0 ..........................TA. | ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.1 32 GTTTTCTCCACGTATGTGGAGGTGATCCT # Left flank : CGATGCAGCGGTAAATCATGAAAAGCTGCCTGAAATTGAAGAAAACAATAGCTCTATCTTAGGCGTGGTTGTTTGCAGCAAAGGTTACCCAACGCATCCGGCTCCTAACGTGAAGATTGGCAAGTTGCCTCACGGCACTAATACTTATATCGATTATGCCAACGTGAAAGGTAATTTGAATAATCTGATAGGTGATGGCGGCCGCCTGTTCATGGTGATTTCGGAAGCCGACAATCTAGTCCAGGCGCAGGATAATGTTTATTCATATTTTAGCAAGCTTGATTTGCCAGATTGCTTCTATCGCCACGATATTGGTAATCGTGCTTTGAGAGATTAGATGTGTGAAGAAAGTCCCGTTTGGGACTTTTTTAGTTTGGATTTGTTTATTGGAGTGAAGGATAAGGGATGCACTGGTATAATTATTGTTGTATAAAATATAAACTGAATAAATTTCAGCTTTTTATTAAATCTAAATGGCTTAACGACGGGATTCTTTTAGT # Right flank : TAAATTGTAATTTTGCTCAAGATTTTGGAGTCATTTAAAGAATGCTATAGTCCAAAGCCAGCGACTGTAAACCTATGACAATTAGTTTCTAGTATATAGGTATGGAGGATTGGGAGTAATGAAAATGTATTTTTTGTATGTAATATTAGGGATAGGGCTTATAATTTGGGCTTTTTGGTATGACAATACTGATTTTAAGCCAAAGCAAAAGAAAAACGGTAAGATGACGCGGCCTTATCATAAGCGCTGGTGGCTTTGGACCATTGCCGTGATCTTAGTAGTTGGTGGTATTGGCAACATACTTGGCATGGACGATGATAAAGCAGACAGTAACTCTGCAAAGACCTAGCAAGCCAAAAAGACTAAGCCTAAAAAGCATAAGGAAGCTAAAAAGATAACTTCAAAGAAATCTAAGCCCAAGAAGGACACACAAAGGAAAGAAACTATTCCAAAGAAGACTGAGCCAAAAAAGAAGCCAGCCGAGCTAAAAAAGAAGACAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //